FFCP PHASE1:Hg19::chr11:104788864..104788901,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=643733|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=N|UniProt=|association_with_transcript=0bp_to_ENST00000527425,ENST00000527617,ENST00000527637,ENST00000528437,ENST00000530264,ENST00000531091,NR_034078,NR_034079,uc001phz.2_5end|description=CAGE_peak_1_at_LOC643733_5end|id=chr11:104788864..104788901,-|ontology_enrichment_celltype=CL:0000115!1.08e-16!35;CL:0002139!4.04e-16!24;CL:0000791!9.26e-13!18;CL:0000789!9.26e-13!18;CL:0002420!9.26e-13!18;CL:0002419!9.26e-13!18;CL:0000790!9.26e-13!18;CL:0002078!1.70e-12!44;CL:0000071!9.06e-12!18;CL:0002546!9.06e-12!18;CL:0000838!4.68e-11!52;CL:0000213!6.52e-11!57;CL:0000215!6.52e-11!57;CL:0000542!1.64e-10!53;CL:0000051!1.64e-10!53;CL:0000084!1.06e-09!25;CL:0000827!1.06e-09!25;CL:0000625!4.25e-09!11;CL:0000236!3.15e-07!14|ontology_enrichment_celltype_v019=CL:0002139;7.27e-23;24!CL:0000115;3.72e-18;36!CL:0000791;9.03e-17;18!CL:0000789;9.03e-17;18!CL:0002419;9.03e-17;18!CL:0000071;1.89e-16;18!CL:0000625;1.10e-12;11!CL:0000084;1.18e-11;25!CL:0002078;5.57e-11;45!CL:0000542;5.02e-10;53!CL:0000236;7.01e-10;13!CL:1000413;5.65e-09;9!CL:0002138;4.78e-08;6!CL:0000213;3.48e-07;58!CL:0000215;3.48e-07;58!CL:0000624;4.24e-07;6|ontology_enrichment_celltype_v019_2=CL:0002139,5.11e-23,24;CL:0000115,1.01e-21,36;CL:0000791,9.93e-17,18;CL:0000789,9.93e-17,18;CL:0002420,9.93e-17,18;CL:0002419,9.93e-17,18;CL:0000790,9.93e-17,18;CL:0000071,1.35e-16,18;CL:0002546,1.35e-16,18;CL:0000838,2.23e-16,52;CL:0002078,3.38e-16,45;CL:0000542,7.93e-16,53;CL:0000051,7.93e-16,53;CL:0000625,1.16e-12,11;CL:0000084,1.28e-11,25;CL:0000827,1.28e-11,25;CL:0000213,6.40e-11,58;CL:0000215,6.40e-11,58;CL:0000236,9.09e-11,14;CL:1000413,4.69e-09,9;CL:0005020,4.78e-08,6;CL:0002138,4.78e-08,6;CL:0005022,4.78e-08,6;CL:0000624,4.46e-07,6|ontology_enrichment_development_v019=CL:0000790;9.03e-17;18!CL:0002546;1.89e-16;18!CL:0000051;5.02e-10;53!CL:0005022;4.78e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.06e-14!115;UBERON:0004535!5.39e-12!110;UBERON:0001986!9.06e-12!18;UBERON:0004638!9.06e-12!18;UBERON:0004852!9.06e-12!18;UBERON:0001009!9.41e-12!113;UBERON:0000055!7.29e-10!69;UBERON:0002049!2.02e-09!79;UBERON:0007798!2.02e-09!79;UBERON:0001981!3.27e-08!60;UBERON:0007500!3.27e-08!60;UBERON:0004537!3.27e-08!60;UBERON:0006965!3.27e-08!60;UBERON:0000487!6.75e-08!22;UBERON:0004872!1.41e-07!84;UBERON:0006914!4.54e-07!25|ontology_enrichment_uberon_v019=UBERON:0004638;1.89e-16;18!UBERON:0001986;1.89e-16;18!UBERON:0004852;1.89e-16;18!UBERON:0000487;3.03e-12;22!UBERON:0006914;5.10e-10;25!UBERON:0003915;5.65e-09;9!UBERON:0004700;5.65e-09;9!UBERON:0001917;5.65e-09;9|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.35e-16,18;UBERON:0001986,1.35e-16,18;UBERON:0004852,1.35e-16,18;UBERON:0004535,6.82e-13,109;UBERON:0000487,2.33e-12,22;UBERON:0001009,4.31e-12,112;UBERON:0000055,6.96e-12,68;UBERON:0006914,4.09e-10,25;UBERON:0002049,5.87e-10,78;UBERON:0007798,5.87e-10,78;UBERON:0003915,4.69e-09,9;UBERON:0004700,4.69e-09,9;UBERON:0001917,4.69e-09,9;UBERON:0007500,6.04e-09,59;UBERON:0001981,6.04e-09,59;UBERON:0004537,6.04e-09,59;UBERON:0006965,6.04e-09,59;UBERON:0004872,1.62e-07,83;UBERON:0007023,6.55e-07,114|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,2.00146596706261,0,0,0,0,0.261185628199839,0,0,0,0,0.37129905888014,0,0,1.20538905604795,0.730310090387373,1.46379839637152,0.123121058076788,0,0,0,0,0,0,0,0,1.57345710739562,5.75744097145819,1.70297735647684,0,0,0,0,0,0.587200878669695,4.43196326825502,2.60707781711184,1.73608696572681,0.447830948479849,1.94336199611388,0.515151135268373,0.145398238779565,0.377875943688809,0,0.232429036905685,0,0.619412741790207,2.8769239232215,0.512321413058201,3.07426898855161,0.689491361473237,0,0,0.376484679085209,0,0.224723484445085,0,0.320929027076094,0,0.989553900560148,0.598390972864896,0.426224750532694,0.580418477257168,0.56738522469114,0.622822248995575,1.50749199154046,0.521482918420201,2.38907729175628,0,1.84138817993782,0,0.633765858935825,0.425208599930087,0.419317291016752,0,0.150176892841506,0.16072558669708,0,0,0.365328307529268,22.879511779972,16.3841583378639,19.5692035849982,8.53460445133014,12.4122755981164,20.6910878383614,19.8313461835459,22.8972901088487,16.507176104174,7.6340834618222,6.11637165000366,0,1.68152568894461,0,6.29471264364266,11.0043013569766,8.42966145897988,1.5046784585161,6.19252306603822,8.04861269749047,11.6896037044747,1.55974639639243,18.8547780783896,16.393508199188,23.8307400113214,2.0494611156108,1.8208308658383,1.31550323682941,1.65810010671509,1.73881851441031,2.81744470007915,2.67540828089713,1.04535523804977,4.07913633711238,18.0113631992903,31.9573524298846,26.0610282780088,16.2468361305289,19.5325036156926,22.810849066761,14.1540611933106,22.1416837297144,12.4930726552346,17.7582939033013,20.5281999230262,18.3462136334507,12.8371293976084,7.8205178096711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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=643733 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000527425,ENST00000527617,ENST00000527637,ENST00000528437,ENST00000530264,ENST00000531091,NR_034078,NR_034079,uc001phz.2_5end | |||
|description=CAGE_peak_1_at_LOC643733_5end | |||
|id=chr11:104788864..104788901,- | |||
|ontology_enrichment_celltype=CL:0000115!1.08e-16!35;CL:0002139!4.04e-16!24;CL:0000791!9.26e-13!18;CL:0000789!9.26e-13!18;CL:0002420!9.26e-13!18;CL:0002419!9.26e-13!18;CL:0000790!9.26e-13!18;CL:0002078!1.70e-12!44;CL:0000071!9.06e-12!18;CL:0002546!9.06e-12!18;CL:0000838!4.68e-11!52;CL:0000213!6.52e-11!57;CL:0000215!6.52e-11!57;CL:0000542!1.64e-10!53;CL:0000051!1.64e-10!53;CL:0000084!1.06e-09!25;CL:0000827!1.06e-09!25;CL:0000625!4.25e-09!11;CL:0000236!3.15e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002139;7.27e-23;24!CL:0000115;3.72e-18;36!CL:0000791;9.03e-17;18!CL:0000789;9.03e-17;18!CL:0002419;9.03e-17;18!CL:0000071;1.89e-16;18!CL:0000625;1.10e-12;11!CL:0000084;1.18e-11;25!CL:0002078;5.57e-11;45!CL:0000542;5.02e-10;53!CL:0000236;7.01e-10;13!CL:1000413;5.65e-09;9!CL:0002138;4.78e-08;6!CL:0000213;3.48e-07;58!CL:0000215;3.48e-07;58!CL:0000624;4.24e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,5.11e-23,24;CL:0000115,1.01e-21,36;CL:0000791,9.93e-17,18;CL:0000789,9.93e-17,18;CL:0002420,9.93e-17,18;CL:0002419,9.93e-17,18;CL:0000790,9.93e-17,18;CL:0000071,1.35e-16,18;CL:0002546,1.35e-16,18;CL:0000838,2.23e-16,52;CL:0002078,3.38e-16,45;CL:0000542,7.93e-16,53;CL:0000051,7.93e-16,53;CL:0000625,1.16e-12,11;CL:0000084,1.28e-11,25;CL:0000827,1.28e-11,25;CL:0000213,6.40e-11,58;CL:0000215,6.40e-11,58;CL:0000236,9.09e-11,14;CL:1000413,4.69e-09,9;CL:0005020,4.78e-08,6;CL:0002138,4.78e-08,6;CL:0005022,4.78e-08,6;CL:0000624,4.46e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;9.03e-17;18!CL:0002546;1.89e-16;18!CL:0000051;5.02e-10;53!CL:0005022;4.78e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.06e-14!115;UBERON:0004535!5.39e-12!110;UBERON:0001986!9.06e-12!18;UBERON:0004638!9.06e-12!18;UBERON:0004852!9.06e-12!18;UBERON:0001009!9.41e-12!113;UBERON:0000055!7.29e-10!69;UBERON:0002049!2.02e-09!79;UBERON:0007798!2.02e-09!79;UBERON:0001981!3.27e-08!60;UBERON:0007500!3.27e-08!60;UBERON:0004537!3.27e-08!60;UBERON:0006965!3.27e-08!60;UBERON:0000487!6.75e-08!22;UBERON:0004872!1.41e-07!84;UBERON:0006914!4.54e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.89e-16;18!UBERON:0001986;1.89e-16;18!UBERON:0004852;1.89e-16;18!UBERON:0000487;3.03e-12;22!UBERON:0006914;5.10e-10;25!UBERON:0003915;5.65e-09;9!UBERON:0004700;5.65e-09;9!UBERON:0001917;5.65e-09;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.35e-16,18;UBERON:0001986,1.35e-16,18;UBERON:0004852,1.35e-16,18;UBERON:0004535,6.82e-13,109;UBERON:0000487,2.33e-12,22;UBERON:0001009,4.31e-12,112;UBERON:0000055,6.96e-12,68;UBERON:0006914,4.09e-10,25;UBERON:0002049,5.87e-10,78;UBERON:0007798,5.87e-10,78;UBERON:0003915,4.69e-09,9;UBERON:0004700,4.69e-09,9;UBERON:0001917,4.69e-09,9;UBERON:0007500,6.04e-09,59;UBERON:0001981,6.04e-09,59;UBERON:0004537,6.04e-09,59;UBERON:0006965,6.04e-09,59;UBERON:0004872,1.62e-07,83;UBERON:0007023,6.55e-07,114 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,2.00146596706261,0,0,0,0,0.261185628199839,0,0,0,0,0.37129905888014,0,0,1.20538905604795,0.730310090387373,1.46379839637152,0.123121058076788,0,0,0,0,0,0,0,0,1.57345710739562,5.75744097145819,1.70297735647684,0,0,0,0,0,0.587200878669695,4.43196326825502,2.60707781711184,1.73608696572681,0.447830948479849,1.94336199611388,0.515151135268373,0.145398238779565,0.377875943688809,0,0.232429036905685,0,0.619412741790207,2.8769239232215,0.512321413058201,3.07426898855161,0.689491361473237,0,0,0.376484679085209,0,0.224723484445085,0,0.320929027076094,0,0.989553900560148,0.598390972864896,0.426224750532694,0.580418477257168,0.56738522469114,0.622822248995575,1.50749199154046,0.521482918420201,2.38907729175628,0,1.84138817993782,0,0.633765858935825,0.425208599930087,0.419317291016752,0,0.150176892841506,0.16072558669708,0,0,0.365328307529268,22.879511779972,16.3841583378639,19.5692035849982,8.53460445133014,12.4122755981164,20.6910878383614,19.8313461835459,22.8972901088487,16.507176104174,7.6340834618222,6.11637165000366,0,1.68152568894461,0,6.29471264364266,11.0043013569766,8.42966145897988,1.5046784585161,6.19252306603822,8.04861269749047,11.6896037044747,1.55974639639243,18.8547780783896,16.393508199188,23.8307400113214,2.0494611156108,1.8208308658383,1.31550323682941,1.65810010671509,1.73881851441031,2.81744470007915,2.67540828089713,1.04535523804977,4.07913633711238,18.0113631992903,31.9573524298846,26.0610282780088,16.2468361305289,19.5325036156926,22.810849066761,14.1540611933106,22.1416837297144,12.4930726552346,17.7582939033013,20.5281999230262,18.3462136334507,12.8371293976084,7.82051780967114,0,0,0.767175371061182,0.361439152384566,0.50133791063589,0.579386075843295,0,0,0.0945348171640679,0,0,2.48860243445654,0,0,0,0.522389211897802,0,0,0,0,6.95668425783468,6.02164216574287,5.9013885273291,5.6530794192401,9.64848703282784,6.60283300656162,3.9709043641994,15.7634223093291,12.8075854567216,30.1248551488203,23.3641003923305,64.6231289860736,28.799322790684,9.19157700864672,21.8738325928075,11.7875641334985,4.93964619777574,7.0945232704493,1.53316637465883,4.74632829784064,6.77846452542507,1.31780417436063,0,0,0,0.886413581652058,2.38336525463794,0.860509862246441,0.709336764396714,4.48542080113846,1.06748995729705,2.71334303258876,0,0.67355336034844,0.163461903113459,0.302714855289863,0,0.70296429550139,0,3.99330275081114,0.149448680551801,0.469737994575059,0.161872944368132,0.280901613404497,0.61246251376468,1.35117749042945,0.206651562351531,5.94001428641027,1.7308685049499,0,0,0.841680569770331,0.750711119231785,0.277064115484183,1.31693286264251,0.30648779579902,0.600952235626387,1.13432183160021,0,0,0,0,0.103052529238439,0,0.18611685633159,0,0,0,0.368199594569197,0.80823028409406,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,10.3341763647451,2.80483547606892,0,0,0,0,1.18157981336281,0,0,0.343135620597051,0,0,0,0,0.325808305310325,0,1.44331342025273,0,0.117408694235822,33.7817487760913,25.001217679137,34.8165098589315,0,0,0,0,0,0.93733833986777,0,0,0,0,0.383382679165211,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0.845302752556,1.06375246633948,0,0,0,0,0.285955987316295,0,0,1.62868092146868,1.06617584622764,0,1.20575750823834,0,0.199945982364114,0,0,0,7.42837052023906,9.18895486672911,0,0,0,0,0.784596007954691,15.5654300559523,17.6814611384804,8.72732646702289,0,0,0,0,0.637938751653163,0,0,0.414415513436035,0.613457458595699,0,0.271265023699736,2.70362119990049,0.892144943985809,0.157702415033935,0.117141414992713,0.300946099727719,0,3.10419213877515,0,0.368738337083406,1.65078867489357,0,0,4.54889657470352,5.39285502046542,7.89783927745488,0,1.66435439510497,0,0.248107807818777,0,0,0.640695746278505,0,0,0,0.308419387605311,0.177561725313127,0.574890092096664,1.03850885836724,0.116210378459959,0.120859449591622,0,0,0.114814448164607,1.82091168006717,2.49136388422906,0,0,0,0,0,1.13733384070897,3.91215522135986,4.75015015424707,7.71136263451447,0,0,0,0,0,0,0,0,0,0,4.12164046590889,0,0,0.574265537996172,0,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0,0.170453254832202,0.267096106940212,0,0,0,0,0.464845549297286,0,0.6970372701606,0.616067160352178,0,0,0.55597265731176,2.00374841438788,0.372158369359667,1.58189712359363,1.33441135746677,0.255897791311334,2.1396949401696,0,2.35484592059769,0.719489830333259,0,0.235624804691373,0.808729926293264,3.17020642346017,0,0.975267478179181,0.731140468893853,0,0.545999645631943,0.282810863907425,0,0,0,2.63070531152258,0,0.655894752046633,0,0.30982349809975,0,0,0,0,0.354761064070598,0.422215270595328,0.329294892959902,0.379473173765715,0.349934720244983,0,0.670302275535787,0,4.89547764039252,0,0,0,0,4.05958087385735,3.0585488285695,6.83576624608995,11.9115887728895,4.93634727703433,5.18778648954174,4.32025149790492,2.37937552888281,0,0,0,0,0,0.355709216742071,0,0,0.383010740264733,0,0,0.280797178113459,0,0,0,0,0,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| |||
|short_description=p1@LOC643733 | |||
}} |
Revision as of 15:27, 10 September 2013
Short description: | p1@LOC643733 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LOC643733_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000527425, ENST00000527617, ENST00000527637, ENST00000528437, ENST00000530264, ENST00000531091, NR_034078, NR_034079, uc001phz.2_5end |
EntrezGene: | LOC643733 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 5.11e-23 | 24 |
endothelial cell | 1.01e-21 | 36 |
mature alpha-beta T cell | 9.93e-17 | 18 |
alpha-beta T cell | 9.93e-17 | 18 |
immature T cell | 9.93e-17 | 18 |
mature T cell | 9.93e-17 | 18 |
immature alpha-beta T cell | 9.93e-17 | 18 |
blood vessel endothelial cell | 1.35e-16 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.35e-16 | 18 |
lymphoid lineage restricted progenitor cell | 2.23e-16 | 52 |
meso-epithelial cell | 3.38e-16 | 45 |
lymphocyte | 7.93e-16 | 53 |
common lymphoid progenitor | 7.93e-16 | 53 |
CD8-positive, alpha-beta T cell | 1.16e-12 | 11 |
T cell | 1.28e-11 | 25 |
pro-T cell | 1.28e-11 | 25 |
lining cell | 6.40e-11 | 58 |
barrier cell | 6.40e-11 | 58 |
B cell | 9.09e-11 | 14 |
endothelial cell of artery | 4.69e-09 | 9 |
lymphangioblast | 4.78e-08 | 6 |
endothelial cell of lymphatic vessel | 4.78e-08 | 6 |
vascular lymphangioblast | 4.78e-08 | 6 |
CD4-positive, alpha-beta T cell | 4.46e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.35e-16 | 18 |
endothelium | 1.35e-16 | 18 |
cardiovascular system endothelium | 1.35e-16 | 18 |
cardiovascular system | 6.82e-13 | 109 |
simple squamous epithelium | 2.33e-12 | 22 |
circulatory system | 4.31e-12 | 112 |
vessel | 6.96e-12 | 68 |
squamous epithelium | 4.09e-10 | 25 |
vasculature | 5.87e-10 | 78 |
vascular system | 5.87e-10 | 78 |
endothelial tube | 4.69e-09 | 9 |
arterial system endothelium | 4.69e-09 | 9 |
endothelium of artery | 4.69e-09 | 9 |
epithelial tube open at both ends | 6.04e-09 | 59 |
blood vessel | 6.04e-09 | 59 |
blood vasculature | 6.04e-09 | 59 |
vascular cord | 6.04e-09 | 59 |
splanchnic layer of lateral plate mesoderm | 1.62e-07 | 83 |
adult organism | 6.55e-07 | 114 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.