FFCP PHASE1:Hg19::chr11:77090326..77090366,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5058|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8590|TSSclassifier=S|UniProt=|association_with_transcript=125bp_to_ENST00000533468_5end|coexpression_cluster_id=C16|description=CAGE_peak_12_at_PAK1_5end|id=chr11:77090326..77090366,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000540;9.19e-08;6!CL:0000404;9.19e-08;6!CL:0000775;9.36e-08;3|ontology_enrichment_celltype_v019_2=CL:0000540,8.05e-08,6;CL:0000031,8.05e-08,6;CL:0000404,8.05e-08,6;CL:0000775,9.43e-08,3|ontology_enrichment_development_v019=CL:0000031;9.19e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001869!1.44e-10!32;UBERON:0001893!2.05e-10!34;UBERON:0002020!4.80e-10!34;UBERON:0003528!4.80e-10!34;UBERON:0005743!5.41e-10!86;UBERON:0002791!7.25e-10!33;UBERON:0001017!9.50e-10!82;UBERON:0001950!3.51e-09!20;UBERON:0000956!5.81e-09!25;UBERON:0000203!5.81e-09!25;UBERON:0002619!6.79e-09!22;UBERON:0002780!1.47e-08!41;UBERON:0001890!1.47e-08!41;UBERON:0006240!1.47e-08!41;UBERON:0000073!1.72e-08!94;UBERON:0001016!1.72e-08!94;UBERON:0001049!2.07e-08!57;UBERON:0005068!2.07e-08!57;UBERON:0006241!2.07e-08!57;UBERON:0007135!2.07e-08!57;UBERON:0003080!4.57e-08!42;UBERON:0000955!6.65e-08!69;UBERON:0006238!6.65e-08!69;UBERON:0002616!4.58e-07!59|ontology_enrichment_uberon_v019=UBERON:0001950;9.50e-21;20!UBERON:0002619;8.88e-19;22!UBERON:0000956;2.16e-16;25!UBERON:0000203;2.16e-16;25!UBERON:0002791;3.56e-12;32!UBERON:0001869;3.83e-12;32!UBERON:0001871;3.73e-11;6!UBERON:0001893;1.08e-10;34!UBERON:0002702;2.49e-10;2!UBERON:0003528;3.49e-10;34!UBERON:0002020;3.49e-10;34!UBERON:0000200;8.57e-08;6!UBERON:0001870;3.69e-07;3!UBERON:0002114;3.69e-07;2!UBERON:0002780;9.96e-07;41!UBERON:0001890;9.96e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.56e-20,20;UBERON:0002619,1.39e-18,22;UBERON:0000956,3.21e-16,25;UBERON:0000203,3.21e-16,25;UBERON:0002791,2.22e-12,32;UBERON:0001869,2.22e-12,32;UBERON:0003528,1.44e-11,34;UBERON:0002020,1.44e-11,34;UBERON:0001893,1.44e-11,34;UBERON:0001871,3.63e-11,6;UBERON:0001017,5.68e-11,81;UBERON:0002702,1.98e-10,2;UBERON:0001016,1.47e-09,89;UBERON:0002780,2.48e-09,41;UBERON:0001890,2.48e-09,41;UBERON:0003080,2.48e-09,41;UBERON:0006240,2.48e-09,41;UBERON:0000200,7.68e-08,6;UBERON:0000955,2.80e-07,68;UBERON:0006238,2.80e-07,68;UBERON:0001870,3.18e-07,3;UBERON:0002114,5.72e-07,2;UBERON:0000073,7.35e-07,53;UBERON:0002616,7.35e-07,53|phase1_expression=0,0.214100523890983,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,1.46062018077475,0.487932798790507,0.246242116153576,0.204000691244253,0,0.572471974262113,0.410623275218653,0,0.916960868975415,0.410502947249729,0.787107813136792,0,0.383829398097213,0,0.919421224478927,0.30120591877825,0,0.0774672005803016,0.142169232487422,0.293600439334847,0,0.401088894940283,0,0,0,0.515151135268373,0.436194716338694,1.51150377475524,0.485168122375632,0.697287110717054,0,0.619412741790207,0.28769239232215,0.256160706529101,0.709446689665756,0.689491361473237,0,1.35426486594342,0.752969358170419,0,0.449446968890169,0.612167784741805,0,0,0,0.598390972864896,0,0.580418477257168,0,0,0,0,0.868755378820466,0.605399502633369,0,0,0.845021145247767,1.91343869968539,0.628975936525128,0.22465726229299,0.300353785683013,0.48217676009124,0.855038231223746,0.59675003159727,0.365328307529268,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0.25618263945135,0.130059347559878,0.328875809207352,0.552700035571697,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0.087834785693126,0.261958150995425,0,0,0.324547393654683,0,0.531831842075461,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.379891534993739,0,0,0.354668382198357,0,0,0.49333509683432,0,0,0,0.151357427644931,0,0,0.312160076830321,0,0,0.469737994575059,0.647491777472526,0,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0.673344455816265,0.250237039743928,0,0,0,0.300476117813194,0.226864366320042,0,0,0.423863802319124,0,0.206105058476878,0,0.18611685633159,0,0.0974370051611986,0,0.0920498986422993,0.323292113637624,0.355009592516614,0.10075209822764,0.339121184620975,0,0,0,0.853815942907168,0.132529768321485,0.580969714347592,0.518305275076852,0.756962552626885,0,0,0,1.38134921352481,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0.217879444092406,0.237270619111097,0.134831308160164,0.392442930250692,0,0,0,0.4115740113314,0,0,0,0,0,0.491953754172454,0.171567810298526,0.109750285408626,0,0.301586917234893,0.370353780634118,0,0,0,0.115930404975077,0,0,0,0,0,0,0.246217006087397,0.234004265139238,0,0,0.335964256397719,0,0.626909658919938,0.581267877027924,0,0.492663237895943,0.44024217006613,0.207328115540772,0.144119953416961,0.12624243342638,0,0.381988425558278,0,0,0.205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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5058 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8590 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=125bp_to_ENST00000533468_5end | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_12_at_PAK1_5end | |||
|id=chr11:77090326..77090366,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000540;9.19e-08;6!CL:0000404;9.19e-08;6!CL:0000775;9.36e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.05e-08,6;CL:0000031,8.05e-08,6;CL:0000404,8.05e-08,6;CL:0000775,9.43e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000031;9.19e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!1.44e-10!32;UBERON:0001893!2.05e-10!34;UBERON:0002020!4.80e-10!34;UBERON:0003528!4.80e-10!34;UBERON:0005743!5.41e-10!86;UBERON:0002791!7.25e-10!33;UBERON:0001017!9.50e-10!82;UBERON:0001950!3.51e-09!20;UBERON:0000956!5.81e-09!25;UBERON:0000203!5.81e-09!25;UBERON:0002619!6.79e-09!22;UBERON:0002780!1.47e-08!41;UBERON:0001890!1.47e-08!41;UBERON:0006240!1.47e-08!41;UBERON:0000073!1.72e-08!94;UBERON:0001016!1.72e-08!94;UBERON:0001049!2.07e-08!57;UBERON:0005068!2.07e-08!57;UBERON:0006241!2.07e-08!57;UBERON:0007135!2.07e-08!57;UBERON:0003080!4.57e-08!42;UBERON:0000955!6.65e-08!69;UBERON:0006238!6.65e-08!69;UBERON:0002616!4.58e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;9.50e-21;20!UBERON:0002619;8.88e-19;22!UBERON:0000956;2.16e-16;25!UBERON:0000203;2.16e-16;25!UBERON:0002791;3.56e-12;32!UBERON:0001869;3.83e-12;32!UBERON:0001871;3.73e-11;6!UBERON:0001893;1.08e-10;34!UBERON:0002702;2.49e-10;2!UBERON:0003528;3.49e-10;34!UBERON:0002020;3.49e-10;34!UBERON:0000200;8.57e-08;6!UBERON:0001870;3.69e-07;3!UBERON:0002114;3.69e-07;2!UBERON:0002780;9.96e-07;41!UBERON:0001890;9.96e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.56e-20,20;UBERON:0002619,1.39e-18,22;UBERON:0000956,3.21e-16,25;UBERON:0000203,3.21e-16,25;UBERON:0002791,2.22e-12,32;UBERON:0001869,2.22e-12,32;UBERON:0003528,1.44e-11,34;UBERON:0002020,1.44e-11,34;UBERON:0001893,1.44e-11,34;UBERON:0001871,3.63e-11,6;UBERON:0001017,5.68e-11,81;UBERON:0002702,1.98e-10,2;UBERON:0001016,1.47e-09,89;UBERON:0002780,2.48e-09,41;UBERON:0001890,2.48e-09,41;UBERON:0003080,2.48e-09,41;UBERON:0006240,2.48e-09,41;UBERON:0000200,7.68e-08,6;UBERON:0000955,2.80e-07,68;UBERON:0006238,2.80e-07,68;UBERON:0001870,3.18e-07,3;UBERON:0002114,5.72e-07,2;UBERON:0000073,7.35e-07,53;UBERON:0002616,7.35e-07,53 | |||
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| |||
|short_description=p12@PAK1 | |||
}} |
Revision as of 19:47, 10 September 2013
Short description: | p12@PAK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_PAK1_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 125bp_to_ENST00000533468_5end |
EntrezGene: | PAK1 |
HGNC: | 8590 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.05e-08 | 6 |
neuroblast | 8.05e-08 | 6 |
electrically signaling cell | 8.05e-08 | 6 |
neutrophil | 9.43e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.56e-20 | 20 |
regional part of cerebral cortex | 1.39e-18 | 22 |
cerebral cortex | 3.21e-16 | 25 |
pallium | 3.21e-16 | 25 |
regional part of telencephalon | 2.22e-12 | 32 |
cerebral hemisphere | 2.22e-12 | 32 |
brain grey matter | 1.44e-11 | 34 |
gray matter | 1.44e-11 | 34 |
telencephalon | 1.44e-11 | 34 |
temporal lobe | 3.63e-11 | 6 |
central nervous system | 5.68e-11 | 81 |
middle frontal gyrus | 1.98e-10 | 2 |
nervous system | 1.47e-09 | 89 |
regional part of forebrain | 2.48e-09 | 41 |
forebrain | 2.48e-09 | 41 |
anterior neural tube | 2.48e-09 | 41 |
future forebrain | 2.48e-09 | 41 |
gyrus | 7.68e-08 | 6 |
brain | 2.80e-07 | 68 |
future brain | 2.80e-07 | 68 |
frontal cortex | 3.18e-07 | 3 |
duodenum | 5.72e-07 | 2 |
regional part of nervous system | 7.35e-07 | 53 |
regional part of brain | 7.35e-07 | 53 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.