FFCP PHASE1:Hg19::chr11:61298486..61298500,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C5|description=CAGE_peak_at_chr11:61298486..61298500,-|id=chr11:61298486..61298500,-|ontology_enrichment_celltype=CL:0000181!7.59e-22!12;CL:0000417!7.59e-22!12;CL:0000668!7.59e-22!12;CL:0000414!7.59e-22!12;CL:0000412!7.59e-22!12;CL:0000182!7.59e-22!12;CL:0000223!4.43e-08!59|ontology_enrichment_celltype_v019=CL:0000182;1.68e-10;12!CL:0002563;2.52e-08;4|ontology_enrichment_celltype_v019_2=CL:0000182,1.68e-10,12;CL:0002563,2.43e-08,4|ontology_enrichment_development_v019=UBERON:0004161;2.30e-11;11!UBERON:0009497;9.10e-10;13|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!1.12e-26!19;UBERON:0006925!1.12e-26!19;UBERON:0008836!1.12e-26!19;UBERON:0008835!5.82e-23!22;UBERON:0003894!5.82e-23!22;UBERON:0009854!6.14e-22!23;UBERON:0002365!6.18e-21!31;UBERON:0002330!6.18e-21!31;UBERON:0007499!3.89e-20!25;UBERON:0009497!3.89e-20!25;UBERON:0000015!3.89e-20!25;UBERON:0002423!3.89e-20!25;UBERON:0006235!3.89e-20!25;UBERON:0004161!3.89e-20!25;UBERON:0005057!2.44e-19!26;UBERON:0009856!2.44e-19!26;UBERON:0003929!9.98e-15!54;UBERON:0002368!3.32e-14!35;UBERON:0002530!2.39e-13!59;UBERON:0001736!7.76e-12!1;UBERON:0006298!7.76e-12!1;UBERON:0004921!9.27e-12!129;UBERON:0004185!9.27e-12!129;UBERON:0000949!6.68e-11!45;UBERON:0001007!1.81e-09!155;UBERON:0001555!1.81e-09!155;UBERON:0007026!1.81e-09!155;UBERON:0005911!2.67e-09!82;UBERON:0005172!8.56e-09!55;UBERON:0005173!8.56e-09!55;UBERON:0004119!1.59e-08!169;UBERON:0000925!1.59e-08!169;UBERON:0006595!1.59e-08!169;UBERON:0002417!7.35e-08!61;UBERON:0000916!7.35e-08!61;UBERON:0001041!1.40e-07!98;UBERON:0000077!9.91e-07!130|ontology_enrichment_uberon_v019=UBERON:0002107;2.05e-24;19!UBERON:0006925;2.05e-24;19!UBERON:0002423;1.04e-18;25!UBERON:0002365;4.79e-15;31!UBERON:0002330;4.79e-15;31!UBERON:0002368;1.14e-12;33!UBERON:0000949;3.46e-09;43!UBERON:0001242;2.52e-08;4!UBERON:0001262;2.52e-08;4!UBERON:0004786;2.52e-08;4!UBERON:0004808;2.52e-08;4!UBERON:0001277;2.52e-08;4!UBERON:0001007;1.95e-07;81!UBERON:0005172;3.55e-07;52!UBERON:0005173;3.55e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.05e-24,19;UBERON:0006925,2.05e-24,19;UBERON:0008836,2.05e-24,19;UBERON:0008835,3.56e-21,22;UBERON:0003894,3.56e-21,22;UBERON:0009854,2.78e-20,23;UBERON:0007499,1.04e-18,25;UBERON:0009497,1.04e-18,25;UBERON:0000015,1.04e-18,25;UBERON:0002423,1.04e-18,25;UBERON:0006235,1.04e-18,25;UBERON:0004161,1.04e-18,25;UBERON:0009856,5.17e-18,26;UBERON:0002365,3.35e-15,31;UBERON:0002330,3.35e-15,31;UBERON:0002368,1.58e-13,35;UBERON:0003929,1.72e-13,54;UBERON:0000949,1.24e-10,45;UBERON:0005911,5.41e-09,82;UBERON:0005172,6.15e-09,54;UBERON:0005173,6.15e-09,54;UBERON:0001242,2.43e-08,4;UBERON:0001262,2.43e-08,4;UBERON:0004786,2.43e-08,4;UBERON:0004808,2.43e-08,4;UBERON:0001277,2.43e-08,4;UBERON:0002530,3.24e-08,59;UBERON:0002417,4.37e-08,60;UBERON:0000916,4.37e-08,60|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2106041786197,0.982827216677626,4.13552934676983,0,2.95172252503473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19427136107939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54188262097304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0431487973493,14.5757577803443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_at_chr11:61298486..61298500,- | |||
|id=chr11:61298486..61298500,- | |||
|ontology_enrichment_celltype=CL:0000181!7.59e-22!12;CL:0000417!7.59e-22!12;CL:0000668!7.59e-22!12;CL:0000414!7.59e-22!12;CL:0000412!7.59e-22!12;CL:0000182!7.59e-22!12;CL:0000223!4.43e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.68e-10;12!CL:0002563;2.52e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.68e-10,12;CL:0002563,2.43e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.30e-11;11!UBERON:0009497;9.10e-10;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.12e-26!19;UBERON:0006925!1.12e-26!19;UBERON:0008836!1.12e-26!19;UBERON:0008835!5.82e-23!22;UBERON:0003894!5.82e-23!22;UBERON:0009854!6.14e-22!23;UBERON:0002365!6.18e-21!31;UBERON:0002330!6.18e-21!31;UBERON:0007499!3.89e-20!25;UBERON:0009497!3.89e-20!25;UBERON:0000015!3.89e-20!25;UBERON:0002423!3.89e-20!25;UBERON:0006235!3.89e-20!25;UBERON:0004161!3.89e-20!25;UBERON:0005057!2.44e-19!26;UBERON:0009856!2.44e-19!26;UBERON:0003929!9.98e-15!54;UBERON:0002368!3.32e-14!35;UBERON:0002530!2.39e-13!59;UBERON:0001736!7.76e-12!1;UBERON:0006298!7.76e-12!1;UBERON:0004921!9.27e-12!129;UBERON:0004185!9.27e-12!129;UBERON:0000949!6.68e-11!45;UBERON:0001007!1.81e-09!155;UBERON:0001555!1.81e-09!155;UBERON:0007026!1.81e-09!155;UBERON:0005911!2.67e-09!82;UBERON:0005172!8.56e-09!55;UBERON:0005173!8.56e-09!55;UBERON:0004119!1.59e-08!169;UBERON:0000925!1.59e-08!169;UBERON:0006595!1.59e-08!169;UBERON:0002417!7.35e-08!61;UBERON:0000916!7.35e-08!61;UBERON:0001041!1.40e-07!98;UBERON:0000077!9.91e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.05e-24;19!UBERON:0006925;2.05e-24;19!UBERON:0002423;1.04e-18;25!UBERON:0002365;4.79e-15;31!UBERON:0002330;4.79e-15;31!UBERON:0002368;1.14e-12;33!UBERON:0000949;3.46e-09;43!UBERON:0001242;2.52e-08;4!UBERON:0001262;2.52e-08;4!UBERON:0004786;2.52e-08;4!UBERON:0004808;2.52e-08;4!UBERON:0001277;2.52e-08;4!UBERON:0001007;1.95e-07;81!UBERON:0005172;3.55e-07;52!UBERON:0005173;3.55e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.05e-24,19;UBERON:0006925,2.05e-24,19;UBERON:0008836,2.05e-24,19;UBERON:0008835,3.56e-21,22;UBERON:0003894,3.56e-21,22;UBERON:0009854,2.78e-20,23;UBERON:0007499,1.04e-18,25;UBERON:0009497,1.04e-18,25;UBERON:0000015,1.04e-18,25;UBERON:0002423,1.04e-18,25;UBERON:0006235,1.04e-18,25;UBERON:0004161,1.04e-18,25;UBERON:0009856,5.17e-18,26;UBERON:0002365,3.35e-15,31;UBERON:0002330,3.35e-15,31;UBERON:0002368,1.58e-13,35;UBERON:0003929,1.72e-13,54;UBERON:0000949,1.24e-10,45;UBERON:0005911,5.41e-09,82;UBERON:0005172,6.15e-09,54;UBERON:0005173,6.15e-09,54;UBERON:0001242,2.43e-08,4;UBERON:0001262,2.43e-08,4;UBERON:0004786,2.43e-08,4;UBERON:0004808,2.43e-08,4;UBERON:0001277,2.43e-08,4;UBERON:0002530,3.24e-08,59;UBERON:0002417,4.37e-08,60;UBERON:0000916,4.37e-08,60 | |||
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|short_description=p@chr11:61298486..61298500,- | |||
}} |
Revision as of 18:24, 10 September 2013
Short description: | p@chr11:61298486..61298500, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:61298486..61298500, - |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.68e-10 | 12 |
intestinal epithelial cell | 2.43e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
liver | 2.05e-24 | 19 |
digestive gland | 2.05e-24 | 19 |
liver bud | 2.05e-24 | 19 |
hepatic diverticulum | 3.56e-21 | 22 |
liver primordium | 3.56e-21 | 22 |
digestive tract diverticulum | 2.78e-20 | 23 |
epithelial sac | 1.04e-18 | 25 |
epithelium of foregut-midgut junction | 1.04e-18 | 25 |
anatomical boundary | 1.04e-18 | 25 |
hepatobiliary system | 1.04e-18 | 25 |
foregut-midgut junction | 1.04e-18 | 25 |
septum transversum | 1.04e-18 | 25 |
sac | 5.17e-18 | 26 |
exocrine gland | 3.35e-15 | 31 |
exocrine system | 3.35e-15 | 31 |
endocrine gland | 1.58e-13 | 35 |
gut epithelium | 1.72e-13 | 54 |
endocrine system | 1.24e-10 | 45 |
endo-epithelium | 5.41e-09 | 82 |
abdomen element | 6.15e-09 | 54 |
abdominal segment element | 6.15e-09 | 54 |
intestinal mucosa | 2.43e-08 | 4 |
wall of intestine | 2.43e-08 | 4 |
gastrointestinal system mucosa | 2.43e-08 | 4 |
gastrointestinal system epithelium | 2.43e-08 | 4 |
intestinal epithelium | 2.43e-08 | 4 |
gland | 3.24e-08 | 59 |
abdominal segment of trunk | 4.37e-08 | 60 |
abdomen | 4.37e-08 | 60 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.