FFCP PHASE1:Hg19::chr10:72362460..72362475,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5551|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9360|TSSclassifier=S|UniProt=P14222|association_with_transcript=39bp_to_ENST00000373209_5end|coexpression_cluster_id=C98|description=CAGE_peak_1_at_PRF1_5end|id=chr10:72362460..72362475,-|ontology_enrichment_celltype=CL:0000738!2.83e-29!140;CL:0000037!8.67e-29!172;CL:0000566!8.67e-29!172;CL:0000988!7.77e-28!182;CL:0002032!2.60e-26!165;CL:0000837!2.60e-26!165;CL:0000084!1.17e-22!25;CL:0000827!1.17e-22!25;CL:0002087!1.11e-21!119;CL:0002031!1.00e-20!124;CL:0000791!2.35e-18!18;CL:0000789!2.35e-18!18;CL:0002420!2.35e-18!18;CL:0002419!2.35e-18!18;CL:0000790!2.35e-18!18;CL:0000838!4.10e-15!52;CL:0000542!1.39e-14!53;CL:0000051!1.39e-14!53;CL:0000625!1.01e-12!11;CL:0000766!1.13e-12!76;CL:0000763!2.08e-12!112;CL:0000049!2.08e-12!112;CL:0002057!1.44e-10!42;CL:0000860!2.95e-09!45;CL:0000839!5.56e-08!70;CL:0000094!8.60e-08!8;CL:0000557!1.01e-07!71;CL:0002194!8.75e-07!63;CL:0000576!8.75e-07!63;CL:0000040!8.75e-07!63;CL:0000559!8.75e-07!63|ontology_enrichment_celltype_v019=CL:0000084;1.64e-27;25!CL:0000791;7.06e-27;18!CL:0000789;7.06e-27;18!CL:0002419;7.06e-27;18!CL:0000625;1.73e-18;11!CL:0000094;6.79e-09;8!CL:0000624;1.64e-08;6!CL:0000542;3.28e-08;53!CL:0002087;4.79e-08;104!CL:0000081;1.08e-07;11|ontology_enrichment_celltype_v019_2=CL:0000084,1.18e-27,25;CL:0000827,1.18e-27,25;CL:0000791,4.84e-27,18;CL:0000789,4.84e-27,18;CL:0002420,4.84e-27,18;CL:0002419,4.84e-27,18;CL:0000790,4.84e-27,18;CL:0000738,4.75e-24,136;CL:0000988,1.00e-20,177;CL:0000037,2.27e-20,168;CL:0000625,1.76e-18,11;CL:0002087,6.10e-18,115;CL:0002032,2.29e-17,161;CL:0000837,2.29e-17,161;CL:0002031,5.86e-16,120;CL:0000838,1.08e-14,52;CL:0000542,2.93e-14,53;CL:0000051,2.93e-14,53;CL:0000094,6.15e-09,8;CL:0000766,8.39e-09,72;CL:0000624,1.14e-08,6;CL:0000081,1.19e-07,11|ontology_enrichment_development_v019=CL:0000790;7.06e-27;18!CL:0000051;3.28e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.25e-29!115;UBERON:0002390!3.02e-16!102;UBERON:0003061!3.02e-16!102;UBERON:0000178!5.22e-15!15;UBERON:0000179!5.22e-15!15;UBERON:0000463!5.22e-15!15;UBERON:0002193!1.02e-14!112|ontology_enrichment_uberon_v019=UBERON:0000178;4.17e-22;15!UBERON:0000179;4.17e-22;15!UBERON:0000463;4.17e-22;15!UBERON:0002390;1.79e-12;32!UBERON:0002193;1.63e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.93e-22,15;UBERON:0000179,5.93e-22,15;UBERON:0000463,5.93e-22,15;UBERON:0002390,5.42e-16,98;UBERON:0003061,5.42e-16,98;UBERON:0002193,3.18e-15,108;UBERON:0007023,3.44e-09,114;UBERON:0004177,1.29e-07,7;UBERON:0005057,1.29e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,67.6586556180115,80.6041736004147,39.3232953222833,0,0,0,0.0774672005803016,0,0,38.7796785972314,22.8620670115962,39.7129893410009,2.01523926815932,3.56283032620878,1.03030227053675,1.45398238779565,0.377875943688809,0,1.85943229524548,0.411167888021826,0.309706370895104,1.1507695692886,1.7931249457037,0.236482229888585,3.44745680736619,0,0,2.07066573496865,0.272906150057846,0.449446968890169,1.83650335422542,0.962787081228281,0.639337125799041,1.64925650093358,0.598390972864896,0,2.32167390902867,1.70215567407342,1.24564449799115,1.00499466102697,0.521482918420201,0.217188844705117,4.23779651843358,1.84138817993782,0.949387162322653,0,0.212604299965044,0,0,0,0,0,0.19891667719909,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,0,1.76171156811282,0.764546456250458,1.32171328579026,14.5732226375199,0,1.37696839079683,4.32311839024081,3.90642848099067,5.3499678525017,1.95553359980154,1.89379122293893,0,3.56513462032555,4.12448270464772,3.32300841875432,3.5204502289452,2.94610035369053,2.47112760363769,16.2793525557639,15.7519510137934,10.4329110864619,0.889719378972363,1.33770414044857,2.09071047609954,9.17805675850286,23.3764501097172,14.4323527102705,12.6509846009751,45.5548542483458,52.0866763085135,58.9280267557992,81.6117145401528,97.7817709219756,68.7118996037902,74.5848343938653,100.177615624368,65.522191548038,64.1856469880418,44.4610919920193,0,0,0,0,0,0,0,0,0,0,0.614843499851882,5.43563163315507,0,0,0,0.348259474598534,0.26591592103773,0,1.14398982156026,1.85728750664782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47798971368783,0.704387472105808,1.24396869324463,0.432359860250884,1.2624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,92.3581586506665,156.44242360033,142.96108213186,181.092024190725,0,0,0,0,0,0.749007023947182,2.99161459204025,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44.8686616686666,46.5942673768212,47.4937632225327,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5551 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9360 | |||
|TSSclassifier=S | |||
|UniProt=P14222 | |||
|association_with_transcript=39bp_to_ENST00000373209_5end | |||
|coexpression_cluster_id=C98 | |||
|description=CAGE_peak_1_at_PRF1_5end | |||
|id=chr10:72362460..72362475,- | |||
|ontology_enrichment_celltype=CL:0000738!2.83e-29!140;CL:0000037!8.67e-29!172;CL:0000566!8.67e-29!172;CL:0000988!7.77e-28!182;CL:0002032!2.60e-26!165;CL:0000837!2.60e-26!165;CL:0000084!1.17e-22!25;CL:0000827!1.17e-22!25;CL:0002087!1.11e-21!119;CL:0002031!1.00e-20!124;CL:0000791!2.35e-18!18;CL:0000789!2.35e-18!18;CL:0002420!2.35e-18!18;CL:0002419!2.35e-18!18;CL:0000790!2.35e-18!18;CL:0000838!4.10e-15!52;CL:0000542!1.39e-14!53;CL:0000051!1.39e-14!53;CL:0000625!1.01e-12!11;CL:0000766!1.13e-12!76;CL:0000763!2.08e-12!112;CL:0000049!2.08e-12!112;CL:0002057!1.44e-10!42;CL:0000860!2.95e-09!45;CL:0000839!5.56e-08!70;CL:0000094!8.60e-08!8;CL:0000557!1.01e-07!71;CL:0002194!8.75e-07!63;CL:0000576!8.75e-07!63;CL:0000040!8.75e-07!63;CL:0000559!8.75e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.64e-27;25!CL:0000791;7.06e-27;18!CL:0000789;7.06e-27;18!CL:0002419;7.06e-27;18!CL:0000625;1.73e-18;11!CL:0000094;6.79e-09;8!CL:0000624;1.64e-08;6!CL:0000542;3.28e-08;53!CL:0002087;4.79e-08;104!CL:0000081;1.08e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.18e-27,25;CL:0000827,1.18e-27,25;CL:0000791,4.84e-27,18;CL:0000789,4.84e-27,18;CL:0002420,4.84e-27,18;CL:0002419,4.84e-27,18;CL:0000790,4.84e-27,18;CL:0000738,4.75e-24,136;CL:0000988,1.00e-20,177;CL:0000037,2.27e-20,168;CL:0000625,1.76e-18,11;CL:0002087,6.10e-18,115;CL:0002032,2.29e-17,161;CL:0000837,2.29e-17,161;CL:0002031,5.86e-16,120;CL:0000838,1.08e-14,52;CL:0000542,2.93e-14,53;CL:0000051,2.93e-14,53;CL:0000094,6.15e-09,8;CL:0000766,8.39e-09,72;CL:0000624,1.14e-08,6;CL:0000081,1.19e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;7.06e-27;18!CL:0000051;3.28e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.25e-29!115;UBERON:0002390!3.02e-16!102;UBERON:0003061!3.02e-16!102;UBERON:0000178!5.22e-15!15;UBERON:0000179!5.22e-15!15;UBERON:0000463!5.22e-15!15;UBERON:0002193!1.02e-14!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.17e-22;15!UBERON:0000179;4.17e-22;15!UBERON:0000463;4.17e-22;15!UBERON:0002390;1.79e-12;32!UBERON:0002193;1.63e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.93e-22,15;UBERON:0000179,5.93e-22,15;UBERON:0000463,5.93e-22,15;UBERON:0002390,5.42e-16,98;UBERON:0003061,5.42e-16,98;UBERON:0002193,3.18e-15,108;UBERON:0007023,3.44e-09,114;UBERON:0004177,1.29e-07,7;UBERON:0005057,1.29e-07,7 | |||
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| |||
|short_description=p1@PRF1 | |||
}} |
Revision as of 14:12, 10 September 2013
Short description: | p1@PRF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PRF1_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | 39bp_to_ENST00000373209_5end |
EntrezGene: | PRF1 |
HGNC: | 9360 |
UniProt: | P14222 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.18e-27 | 25 |
pro-T cell | 1.18e-27 | 25 |
mature alpha-beta T cell | 4.84e-27 | 18 |
alpha-beta T cell | 4.84e-27 | 18 |
immature T cell | 4.84e-27 | 18 |
mature T cell | 4.84e-27 | 18 |
immature alpha-beta T cell | 4.84e-27 | 18 |
leukocyte | 4.75e-24 | 136 |
hematopoietic cell | 1.00e-20 | 177 |
hematopoietic stem cell | 2.27e-20 | 168 |
CD8-positive, alpha-beta T cell | 1.76e-18 | 11 |
nongranular leukocyte | 6.10e-18 | 115 |
hematopoietic oligopotent progenitor cell | 2.29e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.29e-17 | 161 |
hematopoietic lineage restricted progenitor cell | 5.86e-16 | 120 |
lymphoid lineage restricted progenitor cell | 1.08e-14 | 52 |
lymphocyte | 2.93e-14 | 53 |
common lymphoid progenitor | 2.93e-14 | 53 |
granulocyte | 6.15e-09 | 8 |
myeloid leukocyte | 8.39e-09 | 72 |
CD4-positive, alpha-beta T cell | 1.14e-08 | 6 |
blood cell | 1.19e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
blood | 5.93e-22 | 15 |
haemolymphatic fluid | 5.93e-22 | 15 |
organism substance | 5.93e-22 | 15 |
hematopoietic system | 5.42e-16 | 98 |
blood island | 5.42e-16 | 98 |
hemolymphoid system | 3.18e-15 | 108 |
adult organism | 3.44e-09 | 114 |
hemopoietic organ | 1.29e-07 | 7 |
immune organ | 1.29e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.