FFCP PHASE1:Hg19::chr10:18629750..18629762,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=783|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1402|TSSclassifier=S|UniProt=|association_with_transcript=84bp_to_ENST00000377329_5end|coexpression_cluster_id=C56|description=CAGE_peak_13_at_CACNB2_5end|id=chr10:18629750..18629762,+|ontology_enrichment_celltype=CL:0002617!4.02e-08!2|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0004140;1.07e-23;1!UBERON:0010226;2.62e-23;1!UBERON:0005062;4.60e-23;4!UBERON:0007284;4.60e-23;4|ontology_enrichment_disease=DOID:114!4.83e-09!2;DOID:1287!5.11e-09!4|ontology_enrichment_disease_v019=DOID:114;5.00e-45;2!DOID:178;2.62e-23;1!DOID:326;2.62e-23;1!DOID:3978;2.62e-23;1!DOID:3394;2.62e-23;1!DOID:5844;2.62e-23;1!DOID:1287;4.11e-23;4|ontology_enrichment_disease_v019_2=DOID:114,4.00e-45,2;DOID:178,2.10e-23,1;DOID:326,2.10e-23,1;DOID:3978,2.10e-23,1;DOID:3394,2.10e-23,1;DOID:5844,2.10e-23,1;DOID:1287,3.68e-23,4|ontology_enrichment_uberon=UBERON:0007023!1.29e-45!115;UBERON:0003075!2.36e-19!86;UBERON:0007284!2.36e-19!86;UBERON:0001049!2.96e-19!57;UBERON:0005068!2.96e-19!57;UBERON:0006241!2.96e-19!57;UBERON:0007135!2.96e-19!57;UBERON:0002346!3.16e-18!90;UBERON:0002780!1.17e-17!41;UBERON:0001890!1.17e-17!41;UBERON:0006240!1.17e-17!41;UBERON:0003080!3.69e-17!42;UBERON:0005743!4.02e-17!86;UBERON:0001017!1.74e-16!82;UBERON:0002616!1.90e-16!59;UBERON:0000073!5.52e-15!94;UBERON:0001016!5.52e-15!94;UBERON:0000955!7.94e-15!69;UBERON:0006238!7.94e-15!69;UBERON:0001893!6.39e-14!34;UBERON:0003056!2.41e-12!61;UBERON:0002791!3.34e-12!33;UBERON:0001869!1.26e-10!32;UBERON:0004121!2.26e-10!169;UBERON:0000924!5.55e-10!173;UBERON:0006601!5.55e-10!173;UBERON:0002020!6.58e-10!34;UBERON:0003528!6.58e-10!34;UBERON:0000153!1.17e-09!129;UBERON:0007811!1.17e-09!129;UBERON:0000200!1.47e-09!6;UBERON:0000033!2.69e-09!123;UBERON:0002360!1.20e-08!2;UBERON:0000094!1.20e-08!2;UBERON:0007645!1.20e-08!2;UBERON:0009663!2.72e-08!7;UBERON:0003127!4.98e-08!2;UBERON:0001950!2.78e-07!20;UBERON:0002298!3.84e-07!8;UBERON:0000025!8.30e-07!194|ontology_enrichment_uberon_v019=UBERON:0007100;5.45e-43;25!UBERON:0003978;2.30e-30;3!UBERON:0000946;2.30e-30;3!UBERON:0002146;1.67e-23;1!UBERON:0005623;1.67e-23;1!UBERON:0002084;2.62e-23;1!UBERON:0002135;2.62e-23;1!UBERON:0002082;2.62e-23;1!UBERON:0000948;1.57e-16;22!UBERON:0002133;2.32e-12;2!UBERON:0001905;3.43e-12;2!UBERON:0002757;3.43e-12;2!UBERON:0010134;3.43e-12;2!UBERON:0005408;3.43e-12;2!UBERON:0001899;3.43e-12;2!UBERON:0010313;7.74e-10;10!UBERON:0004151;1.12e-08;3!UBERON:0003103;1.38e-08;61!UBERON:0003296;9.90e-07;4!UBERON:0010133;9.90e-07;4!UBERON:0002784;9.90e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0007100,8.11e-40,27;UBERON:0003978,2.67e-30,3;UBERON:0009751,2.67e-30,3;UBERON:0000946,2.67e-30,3;UBERON:0002523,2.67e-30,3;UBERON:0005983,2.67e-30,3;UBERON:0002165,2.67e-30,3;UBERON:0002062,2.67e-30,3;UBERON:0007280,2.67e-30,3;UBERON:0002146,1.67e-23,1;UBERON:0005623,1.67e-23,1;UBERON:0002084,2.62e-23,1;UBERON:0002082,2.62e-23,1;UBERON:0010226,2.62e-23,1;UBERON:0002135,3.28e-23,1;UBERON:0003103,7.94e-16,68;UBERON:0000948,3.55e-15,24;UBERON:0005498,3.55e-15,24;UBERON:0004140,3.55e-15,24;UBERON:0009881,3.55e-15,24;UBERON:0004141,3.55e-15,24;UBERON:0003084,3.55e-15,24;UBERON:0007005,3.55e-15,24;UBERON:0004139,3.55e-15,24;UBERON:0004291,3.55e-15,24;UBERON:0004797,1.31e-13,7;UBERON:0002133,2.59e-12,2;UBERON:0001905,3.24e-12,2;UBERON:0002757,3.24e-12,2;UBERON:0010134,3.24e-12,2;UBERON:0005408,3.24e-12,2;UBERON:0001899,3.24e-12,2;UBERON:0007023,3.80e-12,114;UBERON:0010313,8.09e-10,10;UBERON:0002342,8.09e-10,10;UBERON:0005062,8.09e-10,10;UBERON:0001009,1.48e-09,112;UBERON:0004151,1.12e-08,3;UBERON:0003296,9.63e-07,4;UBERON:0010133,9.63e-07,4;UBERON:0002784,9.63e-07,4|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=783 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1402 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=84bp_to_ENST00000377329_5end | |||
|coexpression_cluster_id=C56 | |||
|description=CAGE_peak_13_at_CACNB2_5end | |||
|id=chr10:18629750..18629762,+ | |||
|ontology_enrichment_celltype=CL:0002617!4.02e-08!2 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004140;1.07e-23;1!UBERON:0010226;2.62e-23;1!UBERON:0005062;4.60e-23;4!UBERON:0007284;4.60e-23;4 | |||
|ontology_enrichment_disease=DOID:114!4.83e-09!2;DOID:1287!5.11e-09!4 | |||
|ontology_enrichment_disease_v019=DOID:114;5.00e-45;2!DOID:178;2.62e-23;1!DOID:326;2.62e-23;1!DOID:3978;2.62e-23;1!DOID:3394;2.62e-23;1!DOID:5844;2.62e-23;1!DOID:1287;4.11e-23;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,4.00e-45,2;DOID:178,2.10e-23,1;DOID:326,2.10e-23,1;DOID:3978,2.10e-23,1;DOID:3394,2.10e-23,1;DOID:5844,2.10e-23,1;DOID:1287,3.68e-23,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.29e-45!115;UBERON:0003075!2.36e-19!86;UBERON:0007284!2.36e-19!86;UBERON:0001049!2.96e-19!57;UBERON:0005068!2.96e-19!57;UBERON:0006241!2.96e-19!57;UBERON:0007135!2.96e-19!57;UBERON:0002346!3.16e-18!90;UBERON:0002780!1.17e-17!41;UBERON:0001890!1.17e-17!41;UBERON:0006240!1.17e-17!41;UBERON:0003080!3.69e-17!42;UBERON:0005743!4.02e-17!86;UBERON:0001017!1.74e-16!82;UBERON:0002616!1.90e-16!59;UBERON:0000073!5.52e-15!94;UBERON:0001016!5.52e-15!94;UBERON:0000955!7.94e-15!69;UBERON:0006238!7.94e-15!69;UBERON:0001893!6.39e-14!34;UBERON:0003056!2.41e-12!61;UBERON:0002791!3.34e-12!33;UBERON:0001869!1.26e-10!32;UBERON:0004121!2.26e-10!169;UBERON:0000924!5.55e-10!173;UBERON:0006601!5.55e-10!173;UBERON:0002020!6.58e-10!34;UBERON:0003528!6.58e-10!34;UBERON:0000153!1.17e-09!129;UBERON:0007811!1.17e-09!129;UBERON:0000200!1.47e-09!6;UBERON:0000033!2.69e-09!123;UBERON:0002360!1.20e-08!2;UBERON:0000094!1.20e-08!2;UBERON:0007645!1.20e-08!2;UBERON:0009663!2.72e-08!7;UBERON:0003127!4.98e-08!2;UBERON:0001950!2.78e-07!20;UBERON:0002298!3.84e-07!8;UBERON:0000025!8.30e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;5.45e-43;25!UBERON:0003978;2.30e-30;3!UBERON:0000946;2.30e-30;3!UBERON:0002146;1.67e-23;1!UBERON:0005623;1.67e-23;1!UBERON:0002084;2.62e-23;1!UBERON:0002135;2.62e-23;1!UBERON:0002082;2.62e-23;1!UBERON:0000948;1.57e-16;22!UBERON:0002133;2.32e-12;2!UBERON:0001905;3.43e-12;2!UBERON:0002757;3.43e-12;2!UBERON:0010134;3.43e-12;2!UBERON:0005408;3.43e-12;2!UBERON:0001899;3.43e-12;2!UBERON:0010313;7.74e-10;10!UBERON:0004151;1.12e-08;3!UBERON:0003103;1.38e-08;61!UBERON:0003296;9.90e-07;4!UBERON:0010133;9.90e-07;4!UBERON:0002784;9.90e-07;4 | |||
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|short_description=p13@CACNB2 | |||
}} |
Revision as of 12:45, 10 September 2013
Short description: | p13@CACNB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_CACNB2_5end |
Coexpression cluster: | C56_heart_left_umbilical_skeletal_penis_diaphragm_tongue |
Association with transcript: | 84bp_to_ENST00000377329_5end |
EntrezGene: | CACNB2 |
HGNC: | 1402 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
heart disease | 4.00e-45 | 2 |
vascular disease | 2.10e-23 | 1 |
ischemia | 2.10e-23 | 1 |
extrinsic cardiomyopathy | 2.10e-23 | 1 |
myocardial ischemia | 2.10e-23 | 1 |
myocardial infarction | 2.10e-23 | 1 |
cardiovascular system disease | 3.68e-23 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.