FFCP PHASE1:Hg19::chr1:247582183..247582194,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=114548|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16400|TSSclassifier=N|UniProt=|association_with_transcript=261bp_to_ENST00000474792_5end|coexpression_cluster_id=C0|description=CAGE_peak_4_at_NLRP3_5end|id=chr1:247582183..247582194,+|ontology_enrichment_celltype=CL:0002057!4.06e-88!42;CL:0000860!9.03e-82!45;CL:0002194!2.28e-59!63;CL:0000576!2.28e-59!63;CL:0000040!2.28e-59!63;CL:0000559!2.28e-59!63;CL:0002009!2.39e-57!65;CL:0000766!3.14e-55!76;CL:0000839!8.50e-53!70;CL:0000557!5.81e-52!71;CL:0002087!3.75e-42!119;CL:0000738!2.91e-39!140;CL:0000763!1.40e-37!112;CL:0000049!1.40e-37!112;CL:0002031!4.52e-33!124;CL:0000037!2.69e-32!172;CL:0000566!2.69e-32!172;CL:0000988!4.57e-30!182;CL:0002032!3.18e-28!165;CL:0000837!3.18e-28!165;CL:0000842!1.40e-13!3;CL:0002393!3.47e-12!9;CL:0002397!3.47e-12!9;CL:0000134!4.06e-11!358;CL:0002320!9.69e-11!365;CL:0000224!2.64e-10!4;CL:0000219!2.07e-09!390;CL:0000048!8.05e-08!430;CL:0000723!1.35e-07!436;CL:0000034!2.65e-07!444;CL:0000080!5.22e-07!6|ontology_enrichment_celltype_v019=CL:0000860;8.77e-51;33!CL:0002057;8.77e-51;33!CL:0000473;2.89e-38;39!CL:0000234;2.89e-38;39!CL:0000576;4.89e-31;48!CL:0000766;1.23e-25;69!CL:0002393;3.51e-19;6!CL:0002397;3.51e-19;6!CL:0002087;6.15e-13;104!CL:0000763;1.38e-12;100!CL:0000771;2.05e-07;2|ontology_enrichment_celltype_v019_2=CL:0000860,1.18e-64,42;CL:0002057,1.18e-64,42;CL:0000473,2.14e-56,48;CL:0000234,2.14e-56,48;CL:0002194,7.93e-45,59;CL:0000576,7.93e-45,59;CL:0000040,7.93e-45,59;CL:0000559,7.93e-45,59;CL:0002009,2.47e-43,61;CL:0000766,9.44e-42,72;CL:0000839,5.48e-40,66;CL:0000557,2.23e-39,67;CL:0000763,1.91e-27,108;CL:0000049,1.91e-27,108;CL:0002087,1.99e-22,115;CL:0000738,1.69e-21,136;CL:0002031,1.97e-21,120;CL:0002032,6.43e-18,161;CL:0000837,6.43e-18,161;CL:0000037,4.19e-17,168;CL:0000988,3.76e-16,177;CL:0002393,5.88e-13,9;CL:0002397,5.88e-13,9;CL:0000771,1.99e-07,2;CL:0000134,3.77e-07,354;CL:0002320,5.67e-07,361|ontology_enrichment_development_v019=CL:0002057;2.16e-45;42!CL:0000049;1.01e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.23e-45!80;UBERON:0002390!5.84e-42!102;UBERON:0003061!5.84e-42!102;UBERON:0001474!9.57e-42!86;UBERON:0002193!1.47e-37!112;UBERON:0004765!1.56e-34!101;UBERON:0001434!1.56e-34!101;UBERON:0002405!1.74e-29!115;UBERON:0002204!4.09e-18!167;UBERON:0003081!7.67e-16!216;UBERON:0002384!3.17e-10!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.35e-34,76;UBERON:0001474,5.53e-32,82;UBERON:0004765,4.93e-29,90;UBERON:0002405,4.68e-28,93;UBERON:0002390,1.47e-26,98;UBERON:0003061,1.47e-26,98;UBERON:0001434,5.31e-26,100;UBERON:0002193,5.66e-24,108;UBERON:0002204,5.87e-15,167;UBERON:0003081,5.31e-12,203;UBERON:0000926,4.55e-07,315;UBERON:0004120,4.55e-07,315;UBERON:0006603,4.55e-07,315;UBERON:0002384,9.92e-07,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0,0,0,0,0,0,0,2.21598163412751,2.60707781711184,1.08505435357926,0,0,0,0.145398238779565,0.377875943688809,0,0.232429036905685,1.6446715520873,0,0.863077176966451,1.0246428261164,0.236482229888585,8.61864201841546,1.93645405075148,2.70852973188684,0,0,0,11.6311879100943,4.49300637906531,6.39337125799041,0,0.199463657621632,0.426224750532694,2.32167390902867,1.13477044938228,4.35975574296902,0.251248665256743,0,0,2.42159801053347,0.368277635987565,0.949387162322653,0.422510572623884,0,0.209658645508376,0.22465726229299,0.300353785683013,0.48217676009124,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=114548 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16400 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=261bp_to_ENST00000474792_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_NLRP3_5end | |||
|id=chr1:247582183..247582194,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.06e-88!42;CL:0000860!9.03e-82!45;CL:0002194!2.28e-59!63;CL:0000576!2.28e-59!63;CL:0000040!2.28e-59!63;CL:0000559!2.28e-59!63;CL:0002009!2.39e-57!65;CL:0000766!3.14e-55!76;CL:0000839!8.50e-53!70;CL:0000557!5.81e-52!71;CL:0002087!3.75e-42!119;CL:0000738!2.91e-39!140;CL:0000763!1.40e-37!112;CL:0000049!1.40e-37!112;CL:0002031!4.52e-33!124;CL:0000037!2.69e-32!172;CL:0000566!2.69e-32!172;CL:0000988!4.57e-30!182;CL:0002032!3.18e-28!165;CL:0000837!3.18e-28!165;CL:0000842!1.40e-13!3;CL:0002393!3.47e-12!9;CL:0002397!3.47e-12!9;CL:0000134!4.06e-11!358;CL:0002320!9.69e-11!365;CL:0000224!2.64e-10!4;CL:0000219!2.07e-09!390;CL:0000048!8.05e-08!430;CL:0000723!1.35e-07!436;CL:0000034!2.65e-07!444;CL:0000080!5.22e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.77e-51;33!CL:0002057;8.77e-51;33!CL:0000473;2.89e-38;39!CL:0000234;2.89e-38;39!CL:0000576;4.89e-31;48!CL:0000766;1.23e-25;69!CL:0002393;3.51e-19;6!CL:0002397;3.51e-19;6!CL:0002087;6.15e-13;104!CL:0000763;1.38e-12;100!CL:0000771;2.05e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.18e-64,42;CL:0002057,1.18e-64,42;CL:0000473,2.14e-56,48;CL:0000234,2.14e-56,48;CL:0002194,7.93e-45,59;CL:0000576,7.93e-45,59;CL:0000040,7.93e-45,59;CL:0000559,7.93e-45,59;CL:0002009,2.47e-43,61;CL:0000766,9.44e-42,72;CL:0000839,5.48e-40,66;CL:0000557,2.23e-39,67;CL:0000763,1.91e-27,108;CL:0000049,1.91e-27,108;CL:0002087,1.99e-22,115;CL:0000738,1.69e-21,136;CL:0002031,1.97e-21,120;CL:0002032,6.43e-18,161;CL:0000837,6.43e-18,161;CL:0000037,4.19e-17,168;CL:0000988,3.76e-16,177;CL:0002393,5.88e-13,9;CL:0002397,5.88e-13,9;CL:0000771,1.99e-07,2;CL:0000134,3.77e-07,354;CL:0002320,5.67e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.16e-45;42!CL:0000049;1.01e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.23e-45!80;UBERON:0002390!5.84e-42!102;UBERON:0003061!5.84e-42!102;UBERON:0001474!9.57e-42!86;UBERON:0002193!1.47e-37!112;UBERON:0004765!1.56e-34!101;UBERON:0001434!1.56e-34!101;UBERON:0002405!1.74e-29!115;UBERON:0002204!4.09e-18!167;UBERON:0003081!7.67e-16!216;UBERON:0002384!3.17e-10!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.35e-34,76;UBERON:0001474,5.53e-32,82;UBERON:0004765,4.93e-29,90;UBERON:0002405,4.68e-28,93;UBERON:0002390,1.47e-26,98;UBERON:0003061,1.47e-26,98;UBERON:0001434,5.31e-26,100;UBERON:0002193,5.66e-24,108;UBERON:0002204,5.87e-15,167;UBERON:0003081,5.31e-12,203;UBERON:0000926,4.55e-07,315;UBERON:0004120,4.55e-07,315;UBERON:0006603,4.55e-07,315;UBERON:0002384,9.92e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0,0,0,0,0,0,0,2.21598163412751,2.60707781711184,1.08505435357926,0,0,0,0.145398238779565,0.377875943688809,0,0.232429036905685,1.6446715520873,0,0.863077176966451,1.0246428261164,0.236482229888585,8.61864201841546,1.93645405075148,2.70852973188684,0,0,0,11.6311879100943,4.49300637906531,6.39337125799041,0,0.199463657621632,0.426224750532694,2.32167390902867,1.13477044938228,4.35975574296902,0.251248665256743,0,0,2.42159801053347,0.368277635987565,0.949387162322653,0.422510572623884,0,0.209658645508376,0.22465726229299,0.300353785683013,0.48217676009124,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@NLRP3 | |||
}} |
Revision as of 04:47, 12 September 2013
Short description: | p4@NLRP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_NLRP3_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 261bp_to_ENST00000474792_5end |
EntrezGene: | NLRP3 |
HGNC: | 16400 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.18e-64 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.18e-64 | 42 |
defensive cell | 2.14e-56 | 48 |
phagocyte | 2.14e-56 | 48 |
monopoietic cell | 7.93e-45 | 59 |
monocyte | 7.93e-45 | 59 |
monoblast | 7.93e-45 | 59 |
promonocyte | 7.93e-45 | 59 |
macrophage dendritic cell progenitor | 2.47e-43 | 61 |
myeloid leukocyte | 9.44e-42 | 72 |
myeloid lineage restricted progenitor cell | 5.48e-40 | 66 |
granulocyte monocyte progenitor cell | 2.23e-39 | 67 |
myeloid cell | 1.91e-27 | 108 |
common myeloid progenitor | 1.91e-27 | 108 |
nongranular leukocyte | 1.99e-22 | 115 |
leukocyte | 1.69e-21 | 136 |
hematopoietic lineage restricted progenitor cell | 1.97e-21 | 120 |
hematopoietic oligopotent progenitor cell | 6.43e-18 | 161 |
hematopoietic multipotent progenitor cell | 6.43e-18 | 161 |
hematopoietic stem cell | 4.19e-17 | 168 |
hematopoietic cell | 3.76e-16 | 177 |
intermediate monocyte | 5.88e-13 | 9 |
CD14-positive, CD16-positive monocyte | 5.88e-13 | 9 |
eosinophil | 1.99e-07 | 2 |
mesenchymal cell | 3.77e-07 | 354 |
connective tissue cell | 5.67e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.35e-34 | 76 |
bone element | 5.53e-32 | 82 |
skeletal element | 4.93e-29 | 90 |
immune system | 4.68e-28 | 93 |
hematopoietic system | 1.47e-26 | 98 |
blood island | 1.47e-26 | 98 |
skeletal system | 5.31e-26 | 100 |
hemolymphoid system | 5.66e-24 | 108 |
musculoskeletal system | 5.87e-15 | 167 |
lateral plate mesoderm | 5.31e-12 | 203 |
mesoderm | 4.55e-07 | 315 |
mesoderm-derived structure | 4.55e-07 | 315 |
presumptive mesoderm | 4.55e-07 | 315 |
connective tissue | 9.92e-07 | 371 |
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