FFCP PHASE1:Hg19::chr1:203148938..203148988,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1116|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1932|TSSclassifier=N|UniProt=|association_with_transcript=272bp_to_ENST00000478742_5end|coexpression_cluster_id=C283|description=CAGE_peak_6_at_CHI3L1_5end|id=chr1:203148938..203148988,-|ontology_enrichment_celltype=CL:0000153!1.43e-12!9;CL:0000447!1.43e-12!9;CL:0000667!4.19e-10!6;CL:0000058!4.19e-10!6;CL:0000138!4.19e-10!6;CL:0000499!1.18e-09!27;CL:0000135!4.45e-08!3;CL:0000386!4.45e-08!3;CL:0000388!4.45e-08!3;CL:0000235!6.96e-08!10;CL:0000327!1.39e-07!14|ontology_enrichment_celltype_v019=CL:0000153;2.85e-33;9!CL:0000447;2.85e-33;9!CL:0000138;7.92e-26;6!CL:0000235;1.16e-25;6!CL:0000499;1.47e-20;28!CL:0000327;1.24e-19;15!CL:0000135;2.02e-19;3!CL:0000388;2.02e-19;3!CL:0002540;6.16e-10;6!CL:0000214;1.82e-09;3!CL:0000151;5.40e-08;36|ontology_enrichment_celltype_v019_2=CL:0000153,2.72e-33,9;CL:0000447,2.72e-33,9;CL:0000058,7.92e-26,6;CL:0000138,7.92e-26,6;CL:0000235,1.39e-25,6;CL:0000499,1.35e-20,28;CL:0000327,1.20e-19,15;CL:0000135,1.68e-19,3;CL:0000388,1.68e-19,3;CL:0002540,6.44e-10,6;CL:0000151,7.24e-10,36;CL:0000214,1.74e-09,3;CL:0000134,2.37e-07,354;CL:0002320,4.18e-07,361|ontology_enrichment_development_v019=UBERON:0010115;2.50e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5662;9.40e-08;1|ontology_enrichment_disease_v019_2=DOID:5662,9.71e-08,1|ontology_enrichment_uberon=UBERON:0002298!2.48e-08!8;UBERON:0000043!4.45e-08!3;UBERON:0007023!5.58e-08!115;UBERON:0002308!1.35e-07!9;UBERON:0000125!1.35e-07!9|ontology_enrichment_uberon_v019=UBERON:0007846;2.02e-19;3!UBERON:0000043;2.02e-19;3!UBERON:0007845;2.02e-19;3!UBERON:0006915;1.82e-09;3!UBERON:0007616;1.82e-09;3!UBERON:0002217;1.82e-09;3!UBERON:0002018;1.82e-09;3!UBERON:0001282;1.89e-07;1!UBERON:0009842;1.89e-07;1!UBERON:0003704;1.89e-07;1!UBERON:0001171;1.89e-07;1!UBERON:0001172;1.89e-07;1!UBERON:0002363;2.50e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.68e-19,3;UBERON:0000043,1.68e-19,3;UBERON:0007845,1.68e-19,3;UBERON:0006915,1.74e-09,3;UBERON:0007616,1.74e-09,3;UBERON:0002217,1.74e-09,3;UBERON:0002018,1.74e-09,3;UBERON:0001434,1.13e-07,100;UBERON:0002371,1.58e-07,76;UBERON:0001282,1.72e-07,1;UBERON:0009842,1.72e-07,1;UBERON:0003704,1.72e-07,1;UBERON:0001171,1.72e-07,1;UBERON:0001172,1.72e-07,1;UBERON:0002363,2.83e-07,1;UBERON:0007645,2.83e-07,1;UBERON:0007647,2.83e-07,1;UBERON:0010115,2.83e-07,1;UBERON:0002204,4.73e-07,167;UBERON:0001474,7.64e-07,82;UBERON:0002384,9.05e-07,371|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,2.89151321907653,3.50936537445123,7.38717246700201,23.0632924644819,5.35298357332899,0,0,0,0,0,0,0,0,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89696330006576,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,8.19014927987332,5.7966153292604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,3.64871341923571,1.00451418286425,12.6500363689819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,0,2.27407504055985,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.355123450626254,0.0821271560138091,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.308097234229289,0,0,0,0.145016693914229,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,9.71095122369255,8.56166721695745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0.687010689511529,1.53620382154229,1.11838053946208,1.50164227540718,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,3.76008784295104,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,2.0851571277401,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0.866851769704557,0,0.821432273351958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22414914091781,0,0.129282956361551,0.92562821219883,0,0,0.106787412567695,0,0,0,0.592834895693833,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.665574309221114,0.124192805882767,0,0,0,0,0,0,0,0,0,1.10961172300523,2.65164207385125,16.1003457121648,5.33886732957922,0,0.604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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1116 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1932 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=272bp_to_ENST00000478742_5end | |||
|coexpression_cluster_id=C283 | |||
|description=CAGE_peak_6_at_CHI3L1_5end | |||
|id=chr1:203148938..203148988,- | |||
|ontology_enrichment_celltype=CL:0000153!1.43e-12!9;CL:0000447!1.43e-12!9;CL:0000667!4.19e-10!6;CL:0000058!4.19e-10!6;CL:0000138!4.19e-10!6;CL:0000499!1.18e-09!27;CL:0000135!4.45e-08!3;CL:0000386!4.45e-08!3;CL:0000388!4.45e-08!3;CL:0000235!6.96e-08!10;CL:0000327!1.39e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.85e-33;9!CL:0000447;2.85e-33;9!CL:0000138;7.92e-26;6!CL:0000235;1.16e-25;6!CL:0000499;1.47e-20;28!CL:0000327;1.24e-19;15!CL:0000135;2.02e-19;3!CL:0000388;2.02e-19;3!CL:0002540;6.16e-10;6!CL:0000214;1.82e-09;3!CL:0000151;5.40e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.72e-33,9;CL:0000447,2.72e-33,9;CL:0000058,7.92e-26,6;CL:0000138,7.92e-26,6;CL:0000235,1.39e-25,6;CL:0000499,1.35e-20,28;CL:0000327,1.20e-19,15;CL:0000135,1.68e-19,3;CL:0000388,1.68e-19,3;CL:0002540,6.44e-10,6;CL:0000151,7.24e-10,36;CL:0000214,1.74e-09,3;CL:0000134,2.37e-07,354;CL:0002320,4.18e-07,361 | |||
|ontology_enrichment_development_v019=UBERON:0010115;2.50e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;9.40e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,9.71e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002298!2.48e-08!8;UBERON:0000043!4.45e-08!3;UBERON:0007023!5.58e-08!115;UBERON:0002308!1.35e-07!9;UBERON:0000125!1.35e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;2.02e-19;3!UBERON:0000043;2.02e-19;3!UBERON:0007845;2.02e-19;3!UBERON:0006915;1.82e-09;3!UBERON:0007616;1.82e-09;3!UBERON:0002217;1.82e-09;3!UBERON:0002018;1.82e-09;3!UBERON:0001282;1.89e-07;1!UBERON:0009842;1.89e-07;1!UBERON:0003704;1.89e-07;1!UBERON:0001171;1.89e-07;1!UBERON:0001172;1.89e-07;1!UBERON:0002363;2.50e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.68e-19,3;UBERON:0000043,1.68e-19,3;UBERON:0007845,1.68e-19,3;UBERON:0006915,1.74e-09,3;UBERON:0007616,1.74e-09,3;UBERON:0002217,1.74e-09,3;UBERON:0002018,1.74e-09,3;UBERON:0001434,1.13e-07,100;UBERON:0002371,1.58e-07,76;UBERON:0001282,1.72e-07,1;UBERON:0009842,1.72e-07,1;UBERON:0003704,1.72e-07,1;UBERON:0001171,1.72e-07,1;UBERON:0001172,1.72e-07,1;UBERON:0002363,2.83e-07,1;UBERON:0007645,2.83e-07,1;UBERON:0007647,2.83e-07,1;UBERON:0010115,2.83e-07,1;UBERON:0002204,4.73e-07,167;UBERON:0001474,7.64e-07,82;UBERON:0002384,9.05e-07,371 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,2.89151321907653,3.50936537445123,7.38717246700201,23.0632924644819,5.35298357332899,0,0,0,0,0,0,0,0,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89696330006576,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,8.19014927987332,5.7966153292604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,3.64871341923571,1.00451418286425,12.6500363689819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,0,2.27407504055985,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.355123450626254,0.0821271560138091,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.308097234229289,0,0,0,0.145016693914229,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,9.71095122369255,8.56166721695745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0.687010689511529,1.53620382154229,1.11838053946208,1.50164227540718,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,3.76008784295104,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,2.0851571277401,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0.866851769704557,0,0.821432273351958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22414914091781,0,0.129282956361551,0.92562821219883,0,0,0.106787412567695,0,0,0,0.592834895693833,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.665574309221114,0.124192805882767,0,0,0,0,0,0,0,0,0,1.10961172300523,2.65164207385125,16.1003457121648,5.33886732957922,0,0.604923695052956,0,0,0,0,0,0,0,0.521745061811734,0.450772826991655,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09642024789354,0,0,0,0,0,0,0.138258436151731,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.638535436228605,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0.826747186004736,0,0,0,0,0,0,0,0,0,0,0,0,9.2603525096206,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,1.45051314914126,0,0.691259661814092,0,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,11.5318455631693,52.6880216639817,1.73050624849516,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286888821570705,0,0,0.106727345877715,1.9307228228694,0,0,0,0,0,0,0 | |||
|short_description=p6@CHI3L1 | |||
}} |
Revision as of 02:53, 12 September 2013
Short description: | p6@CHI3L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_CHI3L1_5end |
Coexpression cluster: | C283_tenocyte_Chondrocyte_mesenchymal_Macrophage_pleomorphic_Synoviocyte_cholangiocellular |
Association with transcript: | 272bp_to_ENST00000478742_5end |
EntrezGene: | CHI3L1 |
HGNC: | 1932 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.72e-33 | 9 |
carbohydrate secreting cell | 2.72e-33 | 9 |
chondroblast | 7.92e-26 | 6 |
chondrocyte | 7.92e-26 | 6 |
macrophage | 1.39e-25 | 6 |
stromal cell | 1.35e-20 | 28 |
extracellular matrix secreting cell | 1.20e-19 | 15 |
fibrocyte | 1.68e-19 | 3 |
tendon cell | 1.68e-19 | 3 |
mesenchymal stem cell of the bone marrow | 6.44e-10 | 6 |
secretory cell | 7.24e-10 | 36 |
synovial cell | 1.74e-09 | 3 |
mesenchymal cell | 2.37e-07 | 354 |
connective tissue cell | 4.18e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 1.68e-19 | 3 |
tendon | 1.68e-19 | 3 |
regular connective tissue | 1.68e-19 | 3 |
stratified squamous epithelium | 1.74e-09 | 3 |
layer of synovial tissue | 1.74e-09 | 3 |
synovial joint | 1.74e-09 | 3 |
synovial membrane of synovial joint | 1.74e-09 | 3 |
skeletal system | 1.13e-07 | 100 |
bone marrow | 1.58e-07 | 76 |
intralobular bile duct | 1.72e-07 | 1 |
acinus | 1.72e-07 | 1 |
intrahepatic bile duct | 1.72e-07 | 1 |
portal lobule | 1.72e-07 | 1 |
hepatic acinus | 1.72e-07 | 1 |
dura mater | 2.83e-07 | 1 |
future meninx | 2.83e-07 | 1 |
ectomeninx | 2.83e-07 | 1 |
future dura mater | 2.83e-07 | 1 |
musculoskeletal system | 4.73e-07 | 167 |
bone element | 7.64e-07 | 82 |
connective tissue | 9.05e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 9.71e-08 | 1 |
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