FFCP PHASE1:Hg19::chr1:182992405..182992422,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3915 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6492 | |||
|TSSclassifier=W | |||
|UniProt=P11047,Q6NVY8 | |||
|association_with_transcript=-172bp_to_NM_002293,uc001gpx.2,uc001gpy.3_5end | |||
|coexpression_cluster_id=C1253 | |||
|description=CAGE_peak_5_at_LAMC1_5end | |||
|id=chr1:182992405..182992422,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.75e-26!180;CL:0000222!1.65e-18!119;CL:0000057!1.10e-17!75;CL:0000220!2.17e-16!246;CL:0002321!6.34e-16!248;CL:0000680!3.29e-15!57;CL:0000056!3.29e-15!57;CL:0000355!3.29e-15!57;CL:0000187!1.65e-14!54;CL:0000183!3.65e-14!59;CL:0000192!6.13e-12!42;CL:0000514!6.13e-12!42;CL:0000393!6.21e-12!60;CL:0000211!6.21e-12!60;CL:0000359!4.09e-11!32;CL:0000136!2.97e-08!15;CL:0002620!3.74e-08!23;CL:0000144!1.31e-07!625;CL:0002494!2.73e-07!16;CL:0002334!4.80e-07!12;CL:0002371!6.49e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.08e-11;32!CL:0000134;2.45e-10;55!CL:0000192;1.23e-09;43!CL:0000723;2.09e-09;61!CL:0000048;2.91e-09;58!CL:0002620;1.03e-08;23!CL:0000187;1.10e-08;55!CL:0000136;4.97e-08;13!CL:0002494;8.45e-08;16!CL:0000057;1.63e-07;73!CL:0000393;1.76e-07;61!CL:0000211;1.76e-07;61!CL:0002334;1.91e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.05e-20,121;CL:0000057,4.02e-19,76;CL:0000680,1.73e-16,58;CL:0000056,1.73e-16,58;CL:0000355,1.73e-16,58;CL:0000187,9.82e-16,55;CL:0002321,3.02e-14,250;CL:0000393,4.49e-13,61;CL:0000211,4.49e-13,61;CL:0000192,5.81e-13,43;CL:0000514,5.81e-13,43;CL:0000359,7.74e-12,32;CL:0000136,9.20e-09,15;CL:0002620,1.18e-08,23;CL:0002494,1.00e-07,16;CL:0002334,1.83e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;1.23e-09;43!CL:0000355;1.61e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!3.49e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.53e-07;14 | |||
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| |||
|short_description=p5@LAMC1 | |||
}} |
Revision as of 02:09, 12 September 2013
Short description: | p5@LAMC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LAMC1_5end |
Coexpression cluster: | C1253_Fibroblast_Smooth_Cardiac_Mesenchymal_Adipocyte_mesenchymal_Wilms |
Association with transcript: | -172bp_to_NM_002293, uc001gpx.2, uc001gpy.3_5end |
EntrezGene: | LAMC1 |
HGNC: | 6492 |
UniProt: | P11047Q6NVY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.05e-20 | 121 |
fibroblast | 4.02e-19 | 76 |
muscle precursor cell | 1.73e-16 | 58 |
myoblast | 1.73e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.73e-16 | 58 |
muscle cell | 9.82e-16 | 55 |
embryonic cell | 3.02e-14 | 250 |
electrically responsive cell | 4.49e-13 | 61 |
electrically active cell | 4.49e-13 | 61 |
smooth muscle cell | 5.81e-13 | 43 |
smooth muscle myoblast | 5.81e-13 | 43 |
vascular associated smooth muscle cell | 7.74e-12 | 32 |
fat cell | 9.20e-09 | 15 |
skin fibroblast | 1.18e-08 | 23 |
cardiocyte | 1.00e-07 | 16 |
preadipocyte | 1.83e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.30e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.