FFCP PHASE1:Hg19::chr1:28832548..28832568,+: Difference between revisions
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{{FFCP | 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8998896487124,33.0698874401895,12.1758355572301,22.425967169747,13.1581864045724,30.2688818817469,309.357518828573,25.8080103831982,18.2138624198618,21.5221582220047,45.5224203177474,41.2068566345849,47.3670656668491,209.380155388851,111.981670162634,10.6712480773626,11.9048720148757,182.491290324847,140.596491991575,33.3595644614685,30.0090776739564,225.338819304286,29.2210790563039,156.115648451063,92.6838274500877,21.3000101646436,189.774347691005,104.384799980576,48.8541745170248,56.1197955311177,124.536914661985,85.5299570240689,32.4892041052623,24.9531868115761,86.6190245347738,76.6068508784828,25.4032230114557,104.930945793175,47.7717833923053,89.8206602638787,51.9009203541756,66.1532574566738,111.311065508812,29.1342976734553,43.9396813344737,44.0729483908516,58.7710301601559,16.1418229788853,50.7324476661489,199.428992233982,104.362179803999,440.64159111568,50.2706269077023,44.6838375445,63.8193916671555,85.1274306414356,27.2114637146835,21.2108892391463,46.1324897720121,71.8852288791548,23.246065017087,45.5404667363349,71.897697254588,99.4585211432296,273.139179142831,80.7063802497572,96.3402999783839,342.389911662681,67.1909477186796,20.6428177532043,50.7422124356138,131.26593974473,10.8106469403554,39.7079128209743,52.3736572110246,57.2872327976797,72.0993980665013,86.092685862634,166.665847207139,379.04226914206,210.446210179997,215.604386074549,237.021838470552,138.393718699476,235.665086934833,19.7024615367422,15.5419195490584,29.0209303810573,34.8569196054587,40.0879885973844,49.7554661759217,84.09476060648,115.707267447479,247.699284440575,142.442340226533,18.7968985731144,80.9906302176696,33.5388635063575,98.9401658784291,64.8368736749794,47.9030913426259,82.949930714583,384.431899851531,83.0210813833842,51.3800156049677,49.2745979047254,32.8829484851911,85.0413012679893,55.2578122573975,38.8458421630681,182.724040612843|short_description=p1@RCC1,p1@SNHG3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=1104 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1913,10118 | |||
|TSSclassifier=S | |||
|UniProt=P18754,C9J3R0 | |||
|association_with_transcript=0bp_to_ENST00000373833,ENST00000434290,ENST00000447507_5end | |||
|description=CAGE_peak_1_at_RCC1_5end,CAGE_peak_1_at_SNHG3_5end | |||
|id=chr1:28832548..28832568,+ | |||
|ontology_enrichment_celltype=CL:0000012!5.94e-32!682;CL:0000548!1.04e-29!679;CL:0000004!1.04e-29!679;CL:0000255!1.04e-29!679;CL:0000003!2.08e-29!722;CL:0000063!2.97e-21!578;CL:0000144!1.14e-18!625;CL:0000542!9.00e-15!53;CL:0000051!9.00e-15!53;CL:0002371!1.47e-14!591;CL:0000838!2.90e-14!52;CL:0000945!2.01e-10!24;CL:0000826!2.01e-10!24;CL:0000034!4.85e-09!444;CL:0000066!7.29e-09!254;CL:0000723!2.89e-07!436;CL:0000048!4.11e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.03e-10;24!CL:0000542;4.39e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.00e-15,53;CL:0000051,9.00e-15,53;CL:0000838,2.90e-14,52;CL:0000945,2.01e-10,24;CL:0000826,2.01e-10,24;CL:0000066,5.62e-09,253;CL:0000034,3.99e-08,441 | |||
|ontology_enrichment_development_v019=CL:0000051;4.39e-09;53 | |||
|ontology_enrichment_disease=DOID:162!3.91e-22!235;DOID:14566!1.10e-20!239;DOID:2531!4.73e-20!51;DOID:0060083!4.73e-20!51;DOID:1240!5.98e-15!39;DOID:0050686!3.63e-14!137;DOID:8692!1.44e-11!31;DOID:0050687!4.48e-08!143;DOID:305!4.54e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:2531;1.84e-12;51!DOID:0060083;1.84e-12;51!DOID:1240;2.59e-12;39!DOID:8692;3.23e-11;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.91e-22,235;DOID:14566,1.10e-20,239;DOID:2531,4.73e-20,51;DOID:0060083,4.73e-20,51;DOID:1240,5.98e-15,39;DOID:0050686,3.63e-14,137;DOID:8692,1.44e-11,31;DOID:0050687,4.48e-08,143;DOID:305,4.54e-08,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p1@RCC1,p1@SNHG3 | |||
}} |
Revision as of 05:08, 12 September 2013
Short description: | p1@RCC1, p1@SNHG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RCC1_5end, CAGE_peak_1_at_SNHG3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000373833, ENST00000434290, ENST00000447507_5end |
EntrezGene: | RCC1 |
HGNC: | 10118&submit=Submit 1913, 10118 |
UniProt: | P18754C9J3R0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.00e-15 | 53 |
common lymphoid progenitor | 9.00e-15 | 53 |
lymphoid lineage restricted progenitor cell | 2.90e-14 | 52 |
lymphocyte of B lineage | 2.01e-10 | 24 |
pro-B cell | 2.01e-10 | 24 |
epithelial cell | 5.62e-09 | 253 |
stem cell | 3.99e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.91e-22 | 235 |
disease of cellular proliferation | 1.10e-20 | 239 |
hematologic cancer | 4.73e-20 | 51 |
immune system cancer | 4.73e-20 | 51 |
leukemia | 5.98e-15 | 39 |
organ system cancer | 3.63e-14 | 137 |
myeloid leukemia | 1.44e-11 | 31 |
cell type cancer | 4.48e-08 | 143 |
carcinoma | 4.54e-08 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.