FFCP PHASE1:Hg19::chr1:12678119..12678130,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9249|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17693|TSSclassifier=S|UniProt=O75911|association_with_transcript=-299bp_to_NM_004753,uc001auc.2,uc001aud.3,uc009vnm.2_5end|coexpression_cluster_id=C928|description=CAGE_peak_14_at_DHRS3_5end|id=chr1:12678119..12678130,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000136;1.64e-08;13!CL:0002595;4.52e-07;5|ontology_enrichment_celltype_v019_2=CL:0000136,8.88e-09,15;CL:0002595,3.08e-07,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!7.36e-17!365;UBERON:0004111!5.78e-15!241;UBERON:0003075!1.62e-14!86;UBERON:0007284!1.62e-14!86;UBERON:0007023!3.15e-14!115;UBERON:0002346!9.34e-14!90;UBERON:0000477!2.30e-13!286;UBERON:0000119!3.28e-13!312;UBERON:0000483!3.51e-13!309;UBERON:0000481!2.93e-12!347;UBERON:0000025!1.68e-11!194;UBERON:0001049!1.23e-10!57;UBERON:0005068!1.23e-10!57;UBERON:0006241!1.23e-10!57;UBERON:0007135!1.23e-10!57;UBERON:0003056!1.94e-09!61;UBERON:0007625!1.48e-08!11;UBERON:0002616!1.21e-07!59;UBERON:0000064!2.65e-07!219;UBERON:0000468!2.65e-07!659;UBERON:0000033!5.62e-07!123;UBERON:0002100!5.86e-07!216;UBERON:0000153!6.68e-07!129;UBERON:0007811!6.68e-07!129;UBERON:0000162!8.53e-07!14;UBERON:0001353!8.53e-07!14;UBERON:0000163!8.53e-07!14;UBERON:0006866!8.53e-07!14;UBERON:0000164!8.53e-07!14;UBERON:0000931!8.53e-07!14|ontology_enrichment_uberon_v019=UBERON:0007625;1.53e-14;11!UBERON:0000970;3.64e-10;20!UBERON:0002104;1.63e-09;21!UBERON:0000019;5.94e-09;19!UBERON:0000047;5.94e-09;19!UBERON:0004088;5.94e-09;19!UBERON:0010230;5.94e-09;19!UBERON:0000020;2.18e-08;23!UBERON:0001032;6.73e-08;24!UBERON:0004456;6.73e-08;24!UBERON:0001456;8.23e-08;21!UBERON:0003834;4.52e-07;5!UBERON:0001533;4.52e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0007625,9.58e-15,11;UBERON:0000970,1.26e-09,21;UBERON:0002104,1.26e-09,21;UBERON:0003075,1.01e-08,82;UBERON:0007284,1.01e-08,82;UBERON:0002346,1.07e-08,86;UBERON:0000019,1.83e-08,20;UBERON:0000047,1.83e-08,20;UBERON:0010312,1.83e-08,20;UBERON:0004088,1.83e-08,20;UBERON:0010230,1.83e-08,20;UBERON:0003072,1.83e-08,20;UBERON:0004128,1.83e-08,20;UBERON:0003071,1.83e-08,20;UBERON:0000020,5.39e-08,24;UBERON:0001032,5.39e-08,24;UBERON:0004456,5.39e-08,24;UBERON:0003064,1.15e-07,28;UBERON:0001456,2.03e-07,22;UBERON:0003834,3.08e-07,5;UBERON:0001533,3.08e-07,5;UBERON:0000119,3.42e-07,309;UBERON:0000483,6.16e-07,306;UBERON:0000488,7.78e-07,4|phase1_expression=0.181678379270557,1.71280419112787,1.9733616573436,3.00219895059391,4.02264984984559,0,0,0.631719873426831,3.13422753839806,2.21160542851358,0.697801167972428,0,0,0,0.662794751455832,0,0.602694528023977,0.730310090387373,0,7.51038454268406,3.4680117511523,11.2843699732112,4.29353980696585,0.821246550437305,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.04841031644363,3.45228916977532,0.361439152384566,1.00267582127178,0.869079113764942,0.795285947051099,0,1.70162670895322,2.66075276955077,4.47957407034943,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.805658634218294,0,0.24406205754817,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,1.05927344650575,2.29469296599051,0,0,1.06748995729705,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,1.18800285728205,0.247266929278557,0,0.718618141816238,0,0,0,0,0.919463387397059,0.300476117813194,0.113432183160021,0.179389635688862,1.06778694409284,0.847727604638247,0.300091096084402,0,0.515281080091258,0.37223371266318,0.168776332241266,0.68205903612839,0.504867548488229,0.644349290496095,2.58633690910099,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0.928735856063958,2.88751792667834,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0.4115740113314,4.41026134156626,1.26755034821831,1.96565443335525,0,0,0.122988438543114,4.28919525746314,0,0,0,0,0,0,1.44331342025273,1.39116485970092,4.93116515790451,0.288732895522148,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,9.59112151433216,0,1.16344544182,3.57656445851882,0,0,2.08014873822732,0,0,0.266422179016099,0,0,0,0,0,0,3.61727252471503,2.61460037580088,3.09916272664377,1.2162378064119,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.858840442033979,0,0,3.53550464602372,0,0.788512075169673,0.117141414992713,0,2.27407504055985,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.496215615637554,0,0.280660094433074,1.79394808957981,1.53512174720011,0.321707842287215,1.48418066444991,0,0.355123450626254,0.0821271560138091,0,0,0.241718899183244,0.40101294060657,0.184161977871793,2.87036120411517,0.364182336013434,9.96545553691623,0,0.15403067420883,1.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9249 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17693 | |||
|TSSclassifier=S | |||
|UniProt=O75911 | |||
|association_with_transcript=-299bp_to_NM_004753,uc001auc.2,uc001aud.3,uc009vnm.2_5end | |||
|coexpression_cluster_id=C928 | |||
|description=CAGE_peak_14_at_DHRS3_5end | |||
|id=chr1:12678119..12678130,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.64e-08;13!CL:0002595;4.52e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,8.88e-09,15;CL:0002595,3.08e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!7.36e-17!365;UBERON:0004111!5.78e-15!241;UBERON:0003075!1.62e-14!86;UBERON:0007284!1.62e-14!86;UBERON:0007023!3.15e-14!115;UBERON:0002346!9.34e-14!90;UBERON:0000477!2.30e-13!286;UBERON:0000119!3.28e-13!312;UBERON:0000483!3.51e-13!309;UBERON:0000481!2.93e-12!347;UBERON:0000025!1.68e-11!194;UBERON:0001049!1.23e-10!57;UBERON:0005068!1.23e-10!57;UBERON:0006241!1.23e-10!57;UBERON:0007135!1.23e-10!57;UBERON:0003056!1.94e-09!61;UBERON:0007625!1.48e-08!11;UBERON:0002616!1.21e-07!59;UBERON:0000064!2.65e-07!219;UBERON:0000468!2.65e-07!659;UBERON:0000033!5.62e-07!123;UBERON:0002100!5.86e-07!216;UBERON:0000153!6.68e-07!129;UBERON:0007811!6.68e-07!129;UBERON:0000162!8.53e-07!14;UBERON:0001353!8.53e-07!14;UBERON:0000163!8.53e-07!14;UBERON:0006866!8.53e-07!14;UBERON:0000164!8.53e-07!14;UBERON:0000931!8.53e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.53e-14;11!UBERON:0000970;3.64e-10;20!UBERON:0002104;1.63e-09;21!UBERON:0000019;5.94e-09;19!UBERON:0000047;5.94e-09;19!UBERON:0004088;5.94e-09;19!UBERON:0010230;5.94e-09;19!UBERON:0000020;2.18e-08;23!UBERON:0001032;6.73e-08;24!UBERON:0004456;6.73e-08;24!UBERON:0001456;8.23e-08;21!UBERON:0003834;4.52e-07;5!UBERON:0001533;4.52e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,9.58e-15,11;UBERON:0000970,1.26e-09,21;UBERON:0002104,1.26e-09,21;UBERON:0003075,1.01e-08,82;UBERON:0007284,1.01e-08,82;UBERON:0002346,1.07e-08,86;UBERON:0000019,1.83e-08,20;UBERON:0000047,1.83e-08,20;UBERON:0010312,1.83e-08,20;UBERON:0004088,1.83e-08,20;UBERON:0010230,1.83e-08,20;UBERON:0003072,1.83e-08,20;UBERON:0004128,1.83e-08,20;UBERON:0003071,1.83e-08,20;UBERON:0000020,5.39e-08,24;UBERON:0001032,5.39e-08,24;UBERON:0004456,5.39e-08,24;UBERON:0003064,1.15e-07,28;UBERON:0001456,2.03e-07,22;UBERON:0003834,3.08e-07,5;UBERON:0001533,3.08e-07,5;UBERON:0000119,3.42e-07,309;UBERON:0000483,6.16e-07,306;UBERON:0000488,7.78e-07,4 | |||
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| |||
|short_description=p14@DHRS3 | |||
}} |
Revision as of 23:56, 11 September 2013
Short description: | p14@DHRS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_DHRS3_5end |
Coexpression cluster: | C928_Retinal_Cardiac_mesothelioma_Renal_Meningeal_Smooth_Astrocyte |
Association with transcript: | -299bp_to_NM_004753, uc001auc.2, uc001aud.3, uc009vnm.2_5end |
EntrezGene: | DHRS3 |
HGNC: | 17693 |
UniProt: | O75911 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 8.88e-09 | 15 |
smooth muscle cell of the subclavian artery | 3.08e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 9.58e-15 | 11 |
eye | 1.26e-09 | 21 |
visual system | 1.26e-09 | 21 |
neural plate | 1.01e-08 | 82 |
presumptive neural plate | 1.01e-08 | 82 |
neurectoderm | 1.07e-08 | 86 |
camera-type eye | 1.83e-08 | 20 |
simple eye | 1.83e-08 | 20 |
immature eye | 1.83e-08 | 20 |
ocular region | 1.83e-08 | 20 |
eyeball of camera-type eye | 1.83e-08 | 20 |
optic cup | 1.83e-08 | 20 |
optic vesicle | 1.83e-08 | 20 |
eye primordium | 1.83e-08 | 20 |
sense organ | 5.39e-08 | 24 |
sensory system | 5.39e-08 | 24 |
entire sense organ system | 5.39e-08 | 24 |
intermediate mesoderm | 1.15e-07 | 28 |
face | 2.03e-07 | 22 |
thoracic segment blood vessel | 3.08e-07 | 5 |
subclavian artery | 3.08e-07 | 5 |
cell layer | 3.42e-07 | 309 |
epithelium | 6.16e-07 | 306 |
atypical epithelium | 7.78e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.