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MCL coexpression mm9:300: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000014!1.98e-08!5;UBERON:0001003!1.98e-08!5;UBERON:0002097!1.98e-08!5;UBERON:0002199!1.98e-08!5;UBERON:0007029!1.98e-08!5;UBERON:0007376!1.98e-08!5;UBERON:0002416!1.98e-08!5;UBERON:0007383!1.98e-08!5
|tfbs_overrepresentation_for_novel_motifs=0.0829166,0.0906273,0.0710623,0.338886,0.125245,0.359101,0.164473,2.75647,0.15395,0.413774,0.137777,0.156977,0.140984,0.987419,0.141341,0,0.309751,1.64071,0.678636,1.18872,0.450817,0.611804,0.17167,0.123801,0.258457,0.19018,0.110597,0.122938,1.06282,0.66723,0.368848,2.68892,0.278799,0.80168,0.0355679,0.157309,0.0253476,0.154752,0.224008,0.177786,1.66725,0.117985,0.964562,0.947203,0.407249,0.0980588,0.249844,0.131897,0.772651,0.0457795,0.296304,0.208297,0.419501,0.511069,0.526356,0.176842,1.57198,0.149174,0.0341937,0.175527,0.37428,0.214788,0.0648948,0.287721,0.184085,0.318903,0.648538,0.976882,0.370478,0.836509,0.063053,0.301094,0.000600854,0.555978,0.00566569,1.74329,2.23554,0.241622,0.360359,0.209736,0.150594,0.32329,0.213792,1.02261,0.455476,2.75795e-05,0.507225,0.274959,0.253413,1.13385,0.712592,0.459726,1.03642,0.564989,0.0193136,0.0728776,0.482034,0.403591,0.25003,0.0468111,0.0253676,0.390457,0.495886,0.29676,0.295953,0.117743,0.342607,0.129587,0.215438,0.454675,0.0796301,0.497436,0.0579851,0.140823,0.719117,0.843445,0.207334,0.105758,0.31076,0.255342,0.560777,0.271955,0.19139,0.240971,0.769516,0.363346,0.506409,0.395657,0.647155,0.0330911,0.481183,0.674052,0.620289,0.185736,0.739171,1.0549,0.293295,0.118762,0.693638,1.49553,1.10287,0.652839,0.199449,0.399329,0.291009,0.376878,2.80363,1.45635,0.296414,0.126902,0.0671312,0.000334972,0.512441,0.0772177,0.185128,0.584782,6.08392,0.634838,0.0817634,0.0867803,0.702412,0.454746,0.363706,1.44004,0.288496,0.180287,0.259945,0.155999,0.0784137
|tfbs_overrepresentation_jaspar=MA0003.1;1.56588e-05,MA0004.1;0.104042,MA0006.1;0.0340907,MA0007.1;0.319014,MA0009.1;0.412602,MA0014.1;0.122564,MA0017.1;0.373582,MA0019.1;3.80896,MA0024.1;0.37648,MA0025.1;0.616209,MA0027.1;1.99083,MA0028.1;0.0372733,MA0029.1;0.358857,MA0030.1;0.364159,MA0031.1;0.891816,MA0038.1;0.190128,MA0040.1;0.423075,MA0041.1;0.0680579,MA0042.1;0.0625496,MA0043.1;0.495015,MA0046.1;0.442826,MA0048.1;0.00225319,MA0050.1;0.12507,MA0051.1;0.196084,MA0052.1;0.429851,MA0055.1;0.147419,MA0056.1;0,MA0057.1;0.0112986,MA0058.1;0.0597941,MA0059.1;0.231081,MA0060.1;1.63988,MA0061.1;0.0209166,MA0063.1;0,MA0066.1;0.182901,MA0067.1;0.717937,MA0068.1;0.00188487,MA0069.1;0.430137,MA0070.1;1.08155,MA0071.1;0.124599,MA0072.1;0.414891,MA0073.1;4.82622e-08,MA0074.1;0.160032,MA0076.1;0.0491916,MA0077.1;0.396883,MA0078.1;0.218627,MA0081.1;0.551199,MA0083.1;0.494326,MA0084.1;1.02883,MA0087.1;0.457205,MA0088.1;0.0164647,MA0089.1;0,MA0090.1;0.293275,MA0091.1;0.110977,MA0092.1;0.612109,MA0093.1;0.0399156,MA0095.1;0,MA0098.1;0,MA0100.1;0.152909,MA0101.1;0.068611,MA0103.1;1.08125,MA0105.1;0.0275546,MA0106.1;0.224053,MA0107.1;0.0440872,MA0108.2;2.17646,MA0109.1;0,MA0111.1;0.644717,MA0113.1;1.11639,MA0114.1;0.0900443,MA0115.1;0.497446,MA0116.1;0.0340292,MA0117.1;0.469566,MA0119.1;0.0688632,MA0122.1;0.486676,MA0124.1;1.6053,MA0125.1;0.601578,MA0130.1;0,MA0131.1;0.264933,MA0132.1;0,MA0133.1;0,MA0135.1;0.526836,MA0136.1;0.513613,MA0139.1;0.731715,MA0140.1;0.464908,MA0141.1;0.197414,MA0142.1;0.324241,MA0143.1;0.215799,MA0144.1;0.230788,MA0145.1;0.207994,MA0146.1;0.265496,MA0147.1;0.102772,MA0148.1;0.112635,MA0149.1;0.2488,MA0062.2;0.0053726,MA0035.2;0.472078,MA0039.2;1.5241e-07,MA0138.2;0.259078,MA0002.2;0.0507616,MA0137.2;0.0523179,MA0104.2;0.0123672,MA0047.2;0.18962,MA0112.2;0.0542141,MA0065.2;0.115736,MA0150.1;0.318861,MA0151.1;0,MA0152.1;0.55517,MA0153.1;0.541494,MA0154.1;0.357361,MA0155.1;0.0278048,MA0156.1;0.183686,MA0157.1;0.299365,MA0158.1;0,MA0159.1;0.503089,MA0160.1;0.366505,MA0161.1;0,MA0162.1;0.000949555,MA0163.1;0.00811107,MA0164.1;0.172802,MA0080.2;0.38483,MA0018.2;0.179043,MA0099.2;0.254459,MA0079.2;1.74492e-07,MA0102.2;1.07954,MA0258.1;0.017528,MA0259.1;0.021443,MA0442.1;0
}}

Latest revision as of 15:03, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:43819159..43819164,-p@chr10:43819159..43819164
-
Mm9::chr17:35206270..35206288,+p@chr17:35206270..35206288
+
Mm9::chr17:35206347..35206361,+p@chr17:35206347..35206361
+
Mm9::chr17:35206382..35206387,+p@chr17:35206382..35206387
+
Mm9::chr17:35206395..35206417,+p@chr17:35206395..35206417
+
Mm9::chr17:35206422..35206450,+p@chr17:35206422..35206450
+
Mm9::chr17:35206488..35206502,+p@chr17:35206488..35206502
+
Mm9::chr17:35206526..35206535,+p@chr17:35206526..35206535
+
Mm9::chr17:35206635..35206667,+p@chr17:35206635..35206667
+
Mm9::chr17:35206668..35206694,+p@chr17:35206668..35206694
+
Mm9::chr17:35214025..35214098,+p1@Ly6g6e
Mm9::chr2:120032959..120032974,-p@chr2:120032959..120032974
-
Mm9::chr3:92452225..92452230,-p1@Lce1a1
Mm9::chr3:92460847..92460849,-p1@Lce1b
Mm9::chr3:92474236..92474238,-p1@Lce1a2
Mm9::chr3:92483167..92483169,+p1@Lce1c
Mm9::chr3:92491131..92491133,-p1@Lce1d
Mm9::chr3:92512995..92512997,-p1@Lce1e
Mm9::chr3:92524266..92524281,-p1@Lce1f
Mm9::chr3:92556259..92556260,-p1@Lce1g
Mm9::chr3:92568982..92568988,-p1@Lce1h
Mm9::chr3:92582817..92582825,-p1@Lce1i
Mm9::chr3:92611813..92611826,-p1@Lce1k
Mm9::chr3:92655206..92655208,-p1@Lce1l
Mm9::chr7:31572916..31572931,+p1@Krtdap
Mm9::chr7:31574723..31574727,+p@chr7:31574723..31574727
+
Mm9::chr7:4432287..4432320,+p@chr7:4432287..4432320
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008061chitin binding0.0164302520943034



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
zone of skin1.98e-085
skin epidermis1.98e-085
skin of body1.98e-085
integument1.98e-085
surface1.98e-085
outer epithelium1.98e-085
integumental system1.98e-085
enveloping layer of ectoderm1.98e-085


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.56588e-05
MA0004.10.104042
MA0006.10.0340907
MA0007.10.319014
MA0009.10.412602
MA0014.10.122564
MA0017.10.373582
MA0019.13.80896
MA0024.10.37648
MA0025.10.616209
MA0027.11.99083
MA0028.10.0372733
MA0029.10.358857
MA0030.10.364159
MA0031.10.891816
MA0038.10.190128
MA0040.10.423075
MA0041.10.0680579
MA0042.10.0625496
MA0043.10.495015
MA0046.10.442826
MA0048.10.00225319
MA0050.10.12507
MA0051.10.196084
MA0052.10.429851
MA0055.10.147419
MA0056.10
MA0057.10.0112986
MA0058.10.0597941
MA0059.10.231081
MA0060.11.63988
MA0061.10.0209166
MA0063.10
MA0066.10.182901
MA0067.10.717937
MA0068.10.00188487
MA0069.10.430137
MA0070.11.08155
MA0071.10.124599
MA0072.10.414891
MA0073.14.82622e-08
MA0074.10.160032
MA0076.10.0491916
MA0077.10.396883
MA0078.10.218627
MA0081.10.551199
MA0083.10.494326
MA0084.11.02883
MA0087.10.457205
MA0088.10.0164647
MA0089.10
MA0090.10.293275
MA0091.10.110977
MA0092.10.612109
MA0093.10.0399156
MA0095.10
MA0098.10
MA0100.10.152909
MA0101.10.068611
MA0103.11.08125
MA0105.10.0275546
MA0106.10.224053
MA0107.10.0440872
MA0108.22.17646
MA0109.10
MA0111.10.644717
MA0113.11.11639
MA0114.10.0900443
MA0115.10.497446
MA0116.10.0340292
MA0117.10.469566
MA0119.10.0688632
MA0122.10.486676
MA0124.11.6053
MA0125.10.601578
MA0130.10
MA0131.10.264933
MA0132.10
MA0133.10
MA0135.10.526836
MA0136.10.513613
MA0139.10.731715
MA0140.10.464908
MA0141.10.197414
MA0142.10.324241
MA0143.10.215799
MA0144.10.230788
MA0145.10.207994
MA0146.10.265496
MA0147.10.102772
MA0148.10.112635
MA0149.10.2488
MA0062.20.0053726
MA0035.20.472078
MA0039.21.5241e-07
MA0138.20.259078
MA0002.20.0507616
MA0137.20.0523179
MA0104.20.0123672
MA0047.20.18962
MA0112.20.0542141
MA0065.20.115736
MA0150.10.318861
MA0151.10
MA0152.10.55517
MA0153.10.541494
MA0154.10.357361
MA0155.10.0278048
MA0156.10.183686
MA0157.10.299365
MA0158.10
MA0159.10.503089
MA0160.10.366505
MA0161.10
MA0162.10.000949555
MA0163.10.00811107
MA0164.10.172802
MA0080.20.38483
MA0018.20.179043
MA0099.20.254459
MA0079.21.74492e-07
MA0102.21.07954
MA0258.10.017528
MA0259.10.021443
MA0442.10
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