FFCP PHASE1:Mm9::chr14:122864676..122864708,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=65100|HGNC=|MCL_coexpression_id=671|UniProt=Q7TQ40|association_with_transcript=171bp_to_NM_022987,uc007vbb.2_5end|description=CAGE_peak_1_at_Zic5_5end|id=chr14:122864676..122864708,-|ontology_enrichment_celltype=CL:0000117!6.08e-08!23;CL:0000337!6.08e-08!23;CL:0000221!1.13e-07!44;CL:0000133!1.13e-07!44;CL:0002319!3.10e-07!43|ontology_enrichment_celltype_v019_2=CL:0002613,1.82e-16,3;CL:0000120,2.28e-15,3;CL:0002319,2.52e-08,43;CL:0000221,4.15e-08,44;CL:0000133,4.15e-08,44;CL:0000117,1.46e-07,23;CL:0000337,1.46e-07,23;CL:0000540,7.61e-07,33;CL:0000047,7.61e-07,33;CL:0000031,7.61e-07,33;CL:0000404,7.61e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!7.45e-18!63;UBERON:0001017!6.05e-14!73;UBERON:0005743!6.05e-14!73;UBERON:0004121!2.39e-13!102;UBERON:0000924!2.39e-13!102;UBERON:0006601!2.39e-13!102;UBERON:0000073!2.78e-13!75;UBERON:0001016!2.78e-13!75;UBERON:0002346!4.63e-13!71;UBERON:0003075!4.63e-13!71;UBERON:0007284!4.63e-13!71;UBERON:0003056!9.17e-13!49;UBERON:0000955!2.77e-12!50;UBERON:0006238!2.77e-12!50;UBERON:0001049!4.50e-12!52;UBERON:0005068!4.50e-12!52;UBERON:0006241!4.50e-12!52;UBERON:0007135!4.50e-12!52;UBERON:0002616!1.70e-11!49;UBERON:0000153!8.27e-11!94;UBERON:0007811!3.50e-10!86;UBERON:0002780!1.27e-08!39;UBERON:0001890!1.27e-08!39;UBERON:0006240!1.27e-08!39;UBERON:0003080!2.90e-08!40;UBERON:0000020!3.24e-07!12;UBERON:0001032!3.24e-07!12;UBERON:0004456!3.24e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.26e-12,4;UBERON:0002680,2.26e-12,4;UBERON:0001895,2.26e-12,4;UBERON:0010092,2.26e-12,4;UBERON:0006215,2.26e-12,4;UBERON:0000369,4.36e-10,5;UBERON:0002435,4.36e-10,5;UBERON:0000204,4.36e-10,5;UBERON:0010082,4.36e-10,5;UBERON:0004121,1.10e-09,95;UBERON:0000924,1.10e-09,95;UBERON:0006601,1.10e-09,95;UBERON:0004733,2.08e-08,6;UBERON:0004732,2.08e-08,6;UBERON:0002028,2.08e-08,6;UBERON:0007277,2.08e-08,6;UBERON:0001017,3.54e-08,73;UBERON:0010371,4.00e-08,73;UBERON:0001016,6.56e-08,75;UBERON:0002346,6.78e-08,64;UBERON:0003075,6.78e-08,64;UBERON:0007284,6.78e-08,64|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.12956537739216,0,1.09843091367236,0.388859798148567,0.699932108126813,0,0,0,0,0,0,0,1.61853168687678,2.11596391708813,1.90149421051854,1.0165335962074,0,0,0,0,0.599200221036809,0,0.207379224616955,0.540023753326763,0.210324961351382,0,0,0,0,0,0,0.638436690425939,0,6.4624280987795,8.41686321142169,6.25096044668112,0.558365998002762,0,0.30559649555362,0.294628585473668,0,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.44117753425404,6.49284791121711,0,0,0,0,0,0,0.251308704225729,0.173824320192276,0.255715457330331,0,0.162241263067758,0,0,0,0,1.69156575851515,1.83921683546778,1.0803727788321,0.452114453507145,0.748401490664606,0.384341160854549,0.187403449119458,0,0.862271971731369,0.756424320671277,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,1.02904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.646793418913773,0.643011105094777,0.354680467284547,0.535106452806212,0.822745103010605,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03787347584177,0.399024873401031,0.512200817262403,0.729320151204882,0,0.367687016900028,0.222246727801615,0.206035057238894,0,0.252697211763798,0.25347929989024,0.565879024158229,0.187283014939765,0.320125762024346,0.229741875822453,0.476293691283074,0,0,0,0.294397840268795,0,0,0,0,0.0941093804153306,0.25384382367503,0.365855945745545,0.263069711437843,0.271608227691724,0,0.237270036248348,0.394017929502254,0.818462086339379,0.154936841185966,0.192906610981141,2.24829520144151,0.467863216890817,0,0,0,0|short_description=p1@Zic5}} | ||
|EntrezGene=65100 | |||
|HGNC= | |||
|MCL_coexpression_id=671 | |||
|UniProt=Q7TQ40 | |||
|association_with_transcript=171bp_to_NM_022987,uc007vbb.2_5end | |||
|description=CAGE_peak_1_at_Zic5_5end | |||
|id=chr14:122864676..122864708,- | |||
|ontology_enrichment_celltype=CL:0000117!6.08e-08!23;CL:0000337!6.08e-08!23;CL:0000221!1.13e-07!44;CL:0000133!1.13e-07!44;CL:0002319!3.10e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,1.82e-16,3;CL:0000120,2.28e-15,3;CL:0002319,2.52e-08,43;CL:0000221,4.15e-08,44;CL:0000133,4.15e-08,44;CL:0000117,1.46e-07,23;CL:0000337,1.46e-07,23;CL:0000540,7.61e-07,33;CL:0000047,7.61e-07,33;CL:0000031,7.61e-07,33;CL:0000404,7.61e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.45e-18!63;UBERON:0001017!6.05e-14!73;UBERON:0005743!6.05e-14!73;UBERON:0004121!2.39e-13!102;UBERON:0000924!2.39e-13!102;UBERON:0006601!2.39e-13!102;UBERON:0000073!2.78e-13!75;UBERON:0001016!2.78e-13!75;UBERON:0002346!4.63e-13!71;UBERON:0003075!4.63e-13!71;UBERON:0007284!4.63e-13!71;UBERON:0003056!9.17e-13!49;UBERON:0000955!2.77e-12!50;UBERON:0006238!2.77e-12!50;UBERON:0001049!4.50e-12!52;UBERON:0005068!4.50e-12!52;UBERON:0006241!4.50e-12!52;UBERON:0007135!4.50e-12!52;UBERON:0002616!1.70e-11!49;UBERON:0000153!8.27e-11!94;UBERON:0007811!3.50e-10!86;UBERON:0002780!1.27e-08!39;UBERON:0001890!1.27e-08!39;UBERON:0006240!1.27e-08!39;UBERON:0003080!2.90e-08!40;UBERON:0000020!3.24e-07!12;UBERON:0001032!3.24e-07!12;UBERON:0004456!3.24e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.26e-12,4;UBERON:0002680,2.26e-12,4;UBERON:0001895,2.26e-12,4;UBERON:0010092,2.26e-12,4;UBERON:0006215,2.26e-12,4;UBERON:0000369,4.36e-10,5;UBERON:0002435,4.36e-10,5;UBERON:0000204,4.36e-10,5;UBERON:0010082,4.36e-10,5;UBERON:0004121,1.10e-09,95;UBERON:0000924,1.10e-09,95;UBERON:0006601,1.10e-09,95;UBERON:0004733,2.08e-08,6;UBERON:0004732,2.08e-08,6;UBERON:0002028,2.08e-08,6;UBERON:0007277,2.08e-08,6;UBERON:0001017,3.54e-08,73;UBERON:0010371,4.00e-08,73;UBERON:0001016,6.56e-08,75;UBERON:0002346,6.78e-08,64;UBERON:0003075,6.78e-08,64;UBERON:0007284,6.78e-08,64 | |||
|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.12956537739216,0,1.09843091367236,0.388859798148567,0.699932108126813,0,0,0,0,0,0,0,1.61853168687678,2.11596391708813,1.90149421051854,1.0165335962074,0,0,0,0,0.599200221036809,0,0.207379224616955,0.540023753326763,0.210324961351382,0,0,0,0,0,0,0.638436690425939,0,6.4624280987795,8.41686321142169,6.25096044668112,0.558365998002762,0,0.30559649555362,0.294628585473668,0,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.44117753425404,6.49284791121711,0,0,0,0,0,0,0.251308704225729,0.173824320192276,0.255715457330331,0,0.162241263067758,0,0,0,0,1.69156575851515,1.83921683546778,1.0803727788321,0.452114453507145,0.748401490664606,0.384341160854549,0.187403449119458,0,0.862271971731369,0.756424320671277,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,1.02904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.646793418913773,0.643011105094777,0.354680467284547,0.535106452806212,0.822745103010605,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03787347584177,0.399024873401031,0.512200817262403,0.729320151204882,0,0.367687016900028,0.222246727801615,0.206035057238894,0,0.252697211763798,0.25347929989024,0.565879024158229,0.187283014939765,0.320125762024346,0.229741875822453,0.476293691283074,0,0,0,0.294397840268795,0,0,0,0,0.0941093804153306,0.25384382367503,0.365855945745545,0.263069711437843,0.271608227691724,0,0.237270036248348,0.394017929502254,0.818462086339379,0.154936841185966,0.192906610981141,2.24829520144151,0.467863216890817,0,0,0,0 | |||
|short_description=p1@Zic5 | |||
}} |
Revision as of 01:37, 13 September 2013
Short description: | p1@Zic5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zic5_5end |
Coexpression cluster: | MCL_coexpression_mm9:671 |
Association with transcript: | 171bp_to_NM_022987, uc007vbb.2_5end |
EntrezGene: | Zic5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 1.82e-16 | 3 |
granule cell | 2.28e-15 | 3 |
neural cell | 2.52e-08 | 43 |
ectodermal cell | 4.15e-08 | 44 |
neurectodermal cell | 4.15e-08 | 44 |
CNS neuron (sensu Vertebrata) | 1.46e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.46e-07 | 23 |
neuron | 7.61e-07 | 33 |
neuronal stem cell | 7.61e-07 | 33 |
neuroblast | 7.61e-07 | 33 |
electrically signaling cell | 7.61e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.26e-12 | 4 |
regional part of metencephalon | 2.26e-12 | 4 |
metencephalon | 2.26e-12 | 4 |
future metencephalon | 2.26e-12 | 4 |
rhombic lip | 2.26e-12 | 4 |
corpus striatum | 4.36e-10 | 5 |
striatum | 4.36e-10 | 5 |
ventral part of telencephalon | 4.36e-10 | 5 |
future corpus striatum | 4.36e-10 | 5 |
ectoderm-derived structure | 1.10e-09 | 95 |
ectoderm | 1.10e-09 | 95 |
presumptive ectoderm | 1.10e-09 | 95 |
segmental subdivision of hindbrain | 2.08e-08 | 6 |
segmental subdivision of nervous system | 2.08e-08 | 6 |
hindbrain | 2.08e-08 | 6 |
presumptive hindbrain | 2.08e-08 | 6 |
central nervous system | 3.54e-08 | 73 |
ecto-epithelium | 4.00e-08 | 73 |
nervous system | 6.56e-08 | 75 |
neurectoderm | 6.78e-08 | 64 |
neural plate | 6.78e-08 | 64 |
presumptive neural plate | 6.78e-08 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.