FFCP PHASE1:Mm9::chr1:84692447..84692467,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=227325|HGNC=|MCL_coexpression_id=13|UniProt=Q8JZM4|association_with_transcript=328bp_to_ENSMUST00000049126,NM_152915,uc007bsw.1,uc007bsx.1_5end|description=CAGE_peak_4_at_Dner_5end|id=chr1:84692447..84692467,-|ontology_enrichment_celltype=CL:0000221!4.93e-20!44;CL:0000133!4.93e-20!44;CL:0002319!7.44e-20!43;CL:0000117!8.25e-19!23;CL:0000337!8.25e-19!23;CL:0000540!8.23e-18!33;CL:0000047!8.23e-18!33;CL:0000031!8.23e-18!33;CL:0000404!8.23e-18!33;CL:0000055!1.02e-14!50;CL:0000393!5.74e-13!39;CL:0000211!5.74e-13!39;CL:0002321!2.70e-07!70;CL:0000220!2.70e-07!70|ontology_enrichment_celltype_v019_2=CL:0000117,2.44e-26,23;CL:0000337,2.44e-26,23;CL:0002319,1.92e-21,43;CL:0000221,1.06e-20,44;CL:0000133,1.06e-20,44;CL:0000540,2.00e-18,33;CL:0000047,2.00e-18,33;CL:0000031,2.00e-18,33;CL:0000404,2.00e-18,33;CL:0000393,3.04e-14,39;CL:0000211,3.04e-14,39;CL:0002321,3.60e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.33e-42!73;UBERON:0005743!2.33e-42!73;UBERON:0000073!2.61e-41!75;UBERON:0001016!2.61e-41!75;UBERON:0004121!8.47e-37!102;UBERON:0000924!8.47e-37!102;UBERON:0006601!8.47e-37!102;UBERON:0002346!2.02e-33!71;UBERON:0003075!2.02e-33!71;UBERON:0007284!2.02e-33!71;UBERON:0001049!9.83e-33!52;UBERON:0005068!9.83e-33!52;UBERON:0006241!9.83e-33!52;UBERON:0007135!9.83e-33!52;UBERON:0000033!6.72e-32!63;UBERON:0000955!8.08e-31!50;UBERON:0006238!8.08e-31!50;UBERON:0002616!5.36e-30!49;UBERON:0003056!5.28e-26!49;UBERON:0003080!1.51e-24!40;UBERON:0002780!1.27e-23!39;UBERON:0001890!1.27e-23!39;UBERON:0006240!1.27e-23!39;UBERON:0002020!2.36e-23!34;UBERON:0002791!6.10e-19!29;UBERON:0003528!6.10e-19!29;UBERON:0001893!6.10e-19!29;UBERON:0007811!3.28e-17!86;UBERON:0000153!9.16e-14!94;UBERON:0000956!9.95e-13!21;UBERON:0001869!9.95e-13!21;UBERON:0000203!9.95e-13!21;UBERON:0002619!2.14e-10!17;UBERON:0003076!2.01e-08!12;UBERON:0003057!2.01e-08!12;UBERON:0002420!1.64e-07!8;UBERON:0007245!1.64e-07!8;UBERON:0010009!1.64e-07!8;UBERON:0010011!1.64e-07!8;UBERON:0000454!1.64e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.26e-49,73;UBERON:0001016,4.89e-47,75;UBERON:0000073,3.13e-45,54;UBERON:0001049,2.25e-42,52;UBERON:0005068,2.25e-42,52;UBERON:0006241,2.25e-42,52;UBERON:0007135,2.25e-42,52;UBERON:0004121,8.86e-37,95;UBERON:0000924,8.86e-37,95;UBERON:0006601,8.86e-37,95;UBERON:0000955,7.18e-36,47;UBERON:0006238,7.18e-36,47;UBERON:0002346,1.23e-35,64;UBERON:0003075,1.23e-35,64;UBERON:0007284,1.23e-35,64;UBERON:0002616,9.78e-35,46;UBERON:0002020,6.94e-33,34;UBERON:0003080,2.02e-30,40;UBERON:0010371,3.55e-29,73;UBERON:0002780,3.92e-29,39;UBERON:0001890,3.92e-29,39;UBERON:0006240,3.92e-29,39;UBERON:0003056,1.39e-26,49;UBERON:0003528,1.58e-26,29;UBERON:0002791,1.58e-26,29;UBERON:0001893,1.58e-26,29;UBERON:0010314,8.90e-20,92;UBERON:0000956,1.37e-17,21;UBERON:0001869,1.37e-17,21;UBERON:0000203,1.37e-17,21;UBERON:0002619,3.06e-14,17;UBERON:0003076,9.27e-12,12;UBERON:0003057,9.27e-12,12;UBERON:0000025,5.72e-11,114;UBERON:0002420,4.16e-10,8;UBERON:0007245,4.16e-10,8;UBERON:0010009,4.16e-10,8;UBERON:0010011,4.16e-10,8;UBERON:0000454,4.16e-10,8;UBERON:0004111,2.40e-09,122;UBERON:0002021,9.27e-09,10;UBERON:0000411,9.27e-09,10;UBERON:0001950,9.27e-09,10;UBERON:0002240,2.34e-08,6;UBERON:0005174,2.34e-08,6;UBERON:0001137,2.34e-08,6;UBERON:0001948,1.74e-07,5;UBERON:0002315,1.74e-07,5;UBERON:0001954,6.38e-07,7;UBERON:0003022,6.38e-07,7;UBERON:0002421,6.38e-07,7;UBERON:0000349,6.38e-07,7;UBERON:0002600,6.38e-07,7;UBERON:0011216,6.63e-07,194|phase1_expression=0.320297694209588,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39827672018491,1.09843091367236,2.91644848611425,1.53985063787899,7.18762821824858,0,0,0,0,0,0,10.3181395038395,13.7537654610729,20.9164363157039,0,0,0,0,0,3.29560121570245,6.14749288514487,3.00699875694585,3.78016627328734,2.73422449756797,15.7108041422092,10.6016899656774,5.14461356702807,4.40889166683887,5.51531271966013,13.2139057199266,9.44886301830389,12.2885226604995,8.70449499019279,7.41049913179518,11.4600941522487,9.49222196604695,12.9435400307286,12.3766580699216,15.6153150301044,14.2371680799103,11.3703661953433,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,0.29688427812965,0.346970653532272,0,0,0.150722640552623,0.352766121407114,0.125666591329675,0,0,0,0,0,0,0,8.49064311333487,10.8912287542997,0,0,0,0,14.5296920222678,4.11750542536764,11.9371634507221,6.08385120672968,4.85859368927628,6.64921742590592,5.84068547043927,0,0.124406970610093,0.252722758433675,0.210441855886474,0.130120442962704,0.459804208866946,0.180062129805349,0.30140963567143,1.63287597963187,0.640568601424249,1.3118241438362,1.03481348295606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.73376933133365,5.65975368086064,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0.228497025219458,0,0,0,0.0701358198903186,0.0632365371242573,0,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| ||
|EntrezGene=227325 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=Q8JZM4 | |||
|association_with_transcript=328bp_to_ENSMUST00000049126,NM_152915,uc007bsw.1,uc007bsx.1_5end | |||
|description=CAGE_peak_4_at_Dner_5end | |||
|id=chr1:84692447..84692467,- | |||
|ontology_enrichment_celltype=CL:0000221!4.93e-20!44;CL:0000133!4.93e-20!44;CL:0002319!7.44e-20!43;CL:0000117!8.25e-19!23;CL:0000337!8.25e-19!23;CL:0000540!8.23e-18!33;CL:0000047!8.23e-18!33;CL:0000031!8.23e-18!33;CL:0000404!8.23e-18!33;CL:0000055!1.02e-14!50;CL:0000393!5.74e-13!39;CL:0000211!5.74e-13!39;CL:0002321!2.70e-07!70;CL:0000220!2.70e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.44e-26,23;CL:0000337,2.44e-26,23;CL:0002319,1.92e-21,43;CL:0000221,1.06e-20,44;CL:0000133,1.06e-20,44;CL:0000540,2.00e-18,33;CL:0000047,2.00e-18,33;CL:0000031,2.00e-18,33;CL:0000404,2.00e-18,33;CL:0000393,3.04e-14,39;CL:0000211,3.04e-14,39;CL:0002321,3.60e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.33e-42!73;UBERON:0005743!2.33e-42!73;UBERON:0000073!2.61e-41!75;UBERON:0001016!2.61e-41!75;UBERON:0004121!8.47e-37!102;UBERON:0000924!8.47e-37!102;UBERON:0006601!8.47e-37!102;UBERON:0002346!2.02e-33!71;UBERON:0003075!2.02e-33!71;UBERON:0007284!2.02e-33!71;UBERON:0001049!9.83e-33!52;UBERON:0005068!9.83e-33!52;UBERON:0006241!9.83e-33!52;UBERON:0007135!9.83e-33!52;UBERON:0000033!6.72e-32!63;UBERON:0000955!8.08e-31!50;UBERON:0006238!8.08e-31!50;UBERON:0002616!5.36e-30!49;UBERON:0003056!5.28e-26!49;UBERON:0003080!1.51e-24!40;UBERON:0002780!1.27e-23!39;UBERON:0001890!1.27e-23!39;UBERON:0006240!1.27e-23!39;UBERON:0002020!2.36e-23!34;UBERON:0002791!6.10e-19!29;UBERON:0003528!6.10e-19!29;UBERON:0001893!6.10e-19!29;UBERON:0007811!3.28e-17!86;UBERON:0000153!9.16e-14!94;UBERON:0000956!9.95e-13!21;UBERON:0001869!9.95e-13!21;UBERON:0000203!9.95e-13!21;UBERON:0002619!2.14e-10!17;UBERON:0003076!2.01e-08!12;UBERON:0003057!2.01e-08!12;UBERON:0002420!1.64e-07!8;UBERON:0007245!1.64e-07!8;UBERON:0010009!1.64e-07!8;UBERON:0010011!1.64e-07!8;UBERON:0000454!1.64e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.26e-49,73;UBERON:0001016,4.89e-47,75;UBERON:0000073,3.13e-45,54;UBERON:0001049,2.25e-42,52;UBERON:0005068,2.25e-42,52;UBERON:0006241,2.25e-42,52;UBERON:0007135,2.25e-42,52;UBERON:0004121,8.86e-37,95;UBERON:0000924,8.86e-37,95;UBERON:0006601,8.86e-37,95;UBERON:0000955,7.18e-36,47;UBERON:0006238,7.18e-36,47;UBERON:0002346,1.23e-35,64;UBERON:0003075,1.23e-35,64;UBERON:0007284,1.23e-35,64;UBERON:0002616,9.78e-35,46;UBERON:0002020,6.94e-33,34;UBERON:0003080,2.02e-30,40;UBERON:0010371,3.55e-29,73;UBERON:0002780,3.92e-29,39;UBERON:0001890,3.92e-29,39;UBERON:0006240,3.92e-29,39;UBERON:0003056,1.39e-26,49;UBERON:0003528,1.58e-26,29;UBERON:0002791,1.58e-26,29;UBERON:0001893,1.58e-26,29;UBERON:0010314,8.90e-20,92;UBERON:0000956,1.37e-17,21;UBERON:0001869,1.37e-17,21;UBERON:0000203,1.37e-17,21;UBERON:0002619,3.06e-14,17;UBERON:0003076,9.27e-12,12;UBERON:0003057,9.27e-12,12;UBERON:0000025,5.72e-11,114;UBERON:0002420,4.16e-10,8;UBERON:0007245,4.16e-10,8;UBERON:0010009,4.16e-10,8;UBERON:0010011,4.16e-10,8;UBERON:0000454,4.16e-10,8;UBERON:0004111,2.40e-09,122;UBERON:0002021,9.27e-09,10;UBERON:0000411,9.27e-09,10;UBERON:0001950,9.27e-09,10;UBERON:0002240,2.34e-08,6;UBERON:0005174,2.34e-08,6;UBERON:0001137,2.34e-08,6;UBERON:0001948,1.74e-07,5;UBERON:0002315,1.74e-07,5;UBERON:0001954,6.38e-07,7;UBERON:0003022,6.38e-07,7;UBERON:0002421,6.38e-07,7;UBERON:0000349,6.38e-07,7;UBERON:0002600,6.38e-07,7;UBERON:0011216,6.63e-07,194 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39827672018491,1.09843091367236,2.91644848611425,1.53985063787899,7.18762821824858,0,0,0,0,0,0,10.3181395038395,13.7537654610729,20.9164363157039,0,0,0,0,0,3.29560121570245,6.14749288514487,3.00699875694585,3.78016627328734,2.73422449756797,15.7108041422092,10.6016899656774,5.14461356702807,4.40889166683887,5.51531271966013,13.2139057199266,9.44886301830389,12.2885226604995,8.70449499019279,7.41049913179518,11.4600941522487,9.49222196604695,12.9435400307286,12.3766580699216,15.6153150301044,14.2371680799103,11.3703661953433,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,0.29688427812965,0.346970653532272,0,0,0.150722640552623,0.352766121407114,0.125666591329675,0,0,0,0,0,0,0,8.49064311333487,10.8912287542997,0,0,0,0,14.5296920222678,4.11750542536764,11.9371634507221,6.08385120672968,4.85859368927628,6.64921742590592,5.84068547043927,0,0.124406970610093,0.252722758433675,0.210441855886474,0.130120442962704,0.459804208866946,0.180062129805349,0.30140963567143,1.63287597963187,0.640568601424249,1.3118241438362,1.03481348295606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.73376933133365,5.65975368086064,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0.228497025219458,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0.339490171550376,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,8.18808008937739,6.56385444916338,0,0,0.315508219416257,0.390438744296638,0.430846795465598,0,0,1.13230612315533,0.809621403349789,0.876767573733936,1.58115111178609,7.39039027770156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.42571487479924,0.36012218806262,0.517434735131018,0.857348140126369,2.48276327099183,2.14042581122485,1.48094118541909,3.34911444026059,0,0,0.220528398054962,0,0,0,0,0.164140899745061,0,5.37733375830478,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0.404593039154462,0.165306911450672,0,0,0,0,0,0.165458490457098,0,0.258319646955462,0.337912250981556,0.234714477291508,0.39061315453185,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0.167884616364078,0.19318959403219,0,0,0,0,3.95326289831947,1.84130094602871,2.86447756719698,5.499301834998,2.05524755931193,3.7769694869485,2.70009000092722,2.2516060161211,1.35942722695261,4.14208249401456,0,0.399024873401031,1.02440163452481,0.243106717068294,1.88651846365184,0.183843508450014,0.666740183404846,1.85431551515005,0.962757628775446,1.01078884705519,0.50695859978048,1.69763707247469,1.31098110457835,1.21647789569252,1.32101578597911,0.952587382566147,1.39061191133827,1.73618298417335,0.824171801606613,1.03039244094078,0.685738504770831,0.887379030796687,0.715308569841963,1.59881058295561,1.03520318456864,1.4384483341585,1.82927972872773,0.526139422875686,0.814824683075171,1.12228454331548,1.30498519936592,0.985044823755635,1.63692417267876,1.39443157067369,1.73615949883027,4.49659040288303,1.16965804222704,1.28922632428979,0.956441660344217,0.441182838239031,0.463735671240843 | |||
|short_description=p4@Dner | |||
}} |
Revision as of 21:05, 13 September 2013
Short description: | p4@Dner |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Dner_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 328bp_to_ENSMUST00000049126, NM_152915, uc007bsw.1, uc007bsx.1_5end |
EntrezGene: | Dner |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.44e-26 | 23 |
neuroblast (sensu Vertebrata) | 2.44e-26 | 23 |
neural cell | 1.92e-21 | 43 |
ectodermal cell | 1.06e-20 | 44 |
neurectodermal cell | 1.06e-20 | 44 |
neuron | 2.00e-18 | 33 |
neuronal stem cell | 2.00e-18 | 33 |
neuroblast | 2.00e-18 | 33 |
electrically signaling cell | 2.00e-18 | 33 |
electrically responsive cell | 3.04e-14 | 39 |
electrically active cell | 3.04e-14 | 39 |
embryonic cell | 3.60e-09 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.