FFCP PHASE1:Mm9::chr1:107253217..107253228,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=320311|HGNC=|UniProt=Q8BG47|association_with_transcript=58bp_to_ENSMUST00000058688,ENSMUST00000172299,NM_001160368,NM_178779,uc011wpy.1,uc011wpz.1_5end|description=CAGE_peak_4_at_Rnf152_5end|id=chr1:107253217..107253228,-|ontology_enrichment_celltype=CL:0000540!5.65e-08!33;CL:0000047!5.65e-08!33;CL:0000031!5.65e-08!33;CL:0000404!5.65e-08!33;CL:0000117!2.62e-07!23;CL:0000337!2.62e-07!23|ontology_enrichment_celltype_v019_2=CL:0000540,2.14e-13,33;CL:0000047,2.14e-13,33;CL:0000031,2.14e-13,33;CL:0000404,2.14e-13,33;CL:0000117,1.35e-12,23;CL:0000337,1.35e-12,23;CL:0000393,1.29e-10,39;CL:0000211,1.29e-10,39;CL:0002319,3.31e-09,43;CL:0000221,6.78e-09,44;CL:0000133,6.78e-09,44;CL:0002612,3.41e-07,3;CL:0002321,5.66e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.38e-10,5;UBERON:0002315,2.38e-10,5;UBERON:0003076,1.94e-09,12;UBERON:0003057,1.94e-09,12;UBERON:0002240,1.61e-08,6;UBERON:0005174,1.61e-08,6;UBERON:0001137,1.61e-08,6;UBERON:0011216,1.72e-08,194;UBERON:0001017,5.35e-08,73;UBERON:0001016,1.25e-07,75;UBERON:0002257,3.41e-07,3|phase1_expression=0,0,0.909998478779072,1.51232105653415,1.00179145989269,0.671517087647559,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0.159992422793407,0.22940928106717,1.14846392823004,0,0.646413698057667,2.66032787238923,0.756090389279792,0.886922042621219,0,0,0,0.577703239502549,0,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.388859798148567,0,0,0,0,0,0,0,0.515672092277442,1.61853168687678,2.64495489636016,1.26766280701236,0,0,0,0,0,0.299600110518405,0,0.103689612308478,0,0.630974884054146,2.57085885963423,1.54607978666129,0.244981598429908,0.0958454710182364,0,1.10115880999389,0.383062014255563,1.22885226604995,1.71452174049252,1.28082701043374,1.56274011167028,0.837548997004143,2.25105044012672,0.30559649555362,3.53554302568401,3.27454865837937,2.79599168737951,0.075726193333184,0,0,0,0,0.539703191637817,1.94932925234301,2.68816132258401,0.280888840263504,0,0,0,0.14084341977668,0,0,0,0,0,0,1.1418387971906,0,0,0,0,0.230615497256059,0.150722640552623,0.23517741427141,0.376999773989026,0,3.03658649531814,0,0.323533699894818,0.220841518460394,0,1.86391761218122,2.34224637609238,2.30391377494801,1.02182822083437,0,0,0,0.898743836428936,0,0.376963056338593,0.521472960576829,0.255715457330331,1.0389402227978,0.648965052271031,0.101839363850316,0,0.505445516867349,0.420883711772948,0,0,0.360124259610698,0.150704817835715,0.204109497453984,0.640568601424249,0.468508622798644,2.06962696591213,0,0.189106080167819,0.175951124163949,0.43839146485515,0.556094498451196,0,0.411564272815887,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32833492815819,0.486412857275134,0.146199987425332,0.439100230582101,0.268412837520744,0,1.02904612379284,1.65209391491899,0.528901133327089,0,0.232236671860439,0,0.403367049246685,0.22237804384487,0.760902504450237,0.474529061544512,0.329397909448022,0.502670417600539,0.596869416123452,0.974820435595601,0.898819408654221,0,0.597423819763102,0.189667900953082,0.114248512609729,0,0.203651327845314,0.581857461502877,0.701358198903186,1.39120381673366,1.62371162777562,0.784993639206874,0.863780147452604,0.889357881261447,0,0,0,0.202860121388503,0.241177159752417,0,0.287696137450811,0.324270453550071,0,1.43768206527355,1.48856379067401,0.936113019343682,1.76805214562978,0.538192240565737,1.92977408545347,0.184753190166605,0,0.814824882210129,0.169745085775188,0,0.335012514883631,0,0.780534591431195,1.41871629695572,1.7717175171902,1.2756381492599,0.163863314715738,0.345369963731791,0.144649058581512,0,0,0,0.827810238914197,1.28440471990234,0.586058432961016,0,0.504941854408746,0,1.17131623288992,1.29254038639679,0.477937595905104,0.668396022247182,0,0.809621403349789,2.63030272120181,1.18586333383957,0,1.27746076687442,0.534196811001766,0.162886959353576,0,0,0,0,0.188605079755898,0,0,0,0,0.356497378384721,0,0,0,0,0.18006109403131,0,0,0.354680467284547,0.178368817602071,0,0,0,0,0,0.49465875882444,0.322928853391811,0.482503399425247,0,0.492422699235184,1.45740418314925,0.370850604021019,0.170870880797853,1.857481811669,0.370389054739423,0.188368457004691,0,0,0.169978429993855,0.139951452323658,0.414599921413271,0,0,0.203319467126849,0.216010681643603,0.836353184057875,0.655087691238533,1.07891477107857,1.32245529160537,2.09404753587224,7.12882353104861,0,0,0.299033092087958,0.165458490457098,0,0.129159823477731,0,0.234714477291508,0.13020438484395,0,0,0,0,0,0.102710957164827,0,0,0,0,0.147689527174577,0,0,0,0,0,0.233753804363138,0,0,0.0897138566094757,0,0.19318959403219,0,0.183151624267265,0.857473516316263,0.501572104035363,0.564751842617067,1.38097570952153,0.572895513439397,0.171853182343688,0,0,0,0.45032120322422,0,0.51776031175182,0.415149390336707,0,0.341467211508268,0.486213434136588,0.628839487883947,0.551530525350042,0,0.618105171716683,0.64183841918363,0,0.25347929989024,0,0.37456602987953,0.320125762024346,0.287177344778066,0.952587382566147,0.695305955669133,0,0,0.147198920134397,0.342869252385415,0.354951612318675,0,0.726732083161643,0.470546902076653,0.846146078916765,0.548783918618318,0.263069711437843,0.814824683075171,0,0.237270036248348,0.591026894253381,0,0.619747364743864,0.578719832943424,0.749431733813838,0.935726433781634,0.214871054048298,1.14772999241306,0.441182838239031,0.927471342481686|short_description=p4@Rnf152}} | ||
|EntrezGene=320311 | |||
|HGNC= | |||
|UniProt=Q8BG47 | |||
|association_with_transcript=58bp_to_ENSMUST00000058688,ENSMUST00000172299,NM_001160368,NM_178779,uc011wpy.1,uc011wpz.1_5end | |||
|description=CAGE_peak_4_at_Rnf152_5end | |||
|id=chr1:107253217..107253228,- | |||
|ontology_enrichment_celltype=CL:0000540!5.65e-08!33;CL:0000047!5.65e-08!33;CL:0000031!5.65e-08!33;CL:0000404!5.65e-08!33;CL:0000117!2.62e-07!23;CL:0000337!2.62e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.14e-13,33;CL:0000047,2.14e-13,33;CL:0000031,2.14e-13,33;CL:0000404,2.14e-13,33;CL:0000117,1.35e-12,23;CL:0000337,1.35e-12,23;CL:0000393,1.29e-10,39;CL:0000211,1.29e-10,39;CL:0002319,3.31e-09,43;CL:0000221,6.78e-09,44;CL:0000133,6.78e-09,44;CL:0002612,3.41e-07,3;CL:0002321,5.66e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.38e-10,5;UBERON:0002315,2.38e-10,5;UBERON:0003076,1.94e-09,12;UBERON:0003057,1.94e-09,12;UBERON:0002240,1.61e-08,6;UBERON:0005174,1.61e-08,6;UBERON:0001137,1.61e-08,6;UBERON:0011216,1.72e-08,194;UBERON:0001017,5.35e-08,73;UBERON:0001016,1.25e-07,75;UBERON:0002257,3.41e-07,3 | |||
|phase1_expression=0,0,0.909998478779072,1.51232105653415,1.00179145989269,0.671517087647559,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0.159992422793407,0.22940928106717,1.14846392823004,0,0.646413698057667,2.66032787238923,0.756090389279792,0.886922042621219,0,0,0,0.577703239502549,0,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.388859798148567,0,0,0,0,0,0,0,0.515672092277442,1.61853168687678,2.64495489636016,1.26766280701236,0,0,0,0,0,0.299600110518405,0,0.103689612308478,0,0.630974884054146,2.57085885963423,1.54607978666129,0.244981598429908,0.0958454710182364,0,1.10115880999389,0.383062014255563,1.22885226604995,1.71452174049252,1.28082701043374,1.56274011167028,0.837548997004143,2.25105044012672,0.30559649555362,3.53554302568401,3.27454865837937,2.79599168737951,0.075726193333184,0,0,0,0,0.539703191637817,1.94932925234301,2.68816132258401,0.280888840263504,0,0,0,0.14084341977668,0,0,0,0,0,0,1.1418387971906,0,0,0,0,0.230615497256059,0.150722640552623,0.23517741427141,0.376999773989026,0,3.03658649531814,0,0.323533699894818,0.220841518460394,0,1.86391761218122,2.34224637609238,2.30391377494801,1.02182822083437,0,0,0,0.898743836428936,0,0.376963056338593,0.521472960576829,0.255715457330331,1.0389402227978,0.648965052271031,0.101839363850316,0,0.505445516867349,0.420883711772948,0,0,0.360124259610698,0.150704817835715,0.204109497453984,0.640568601424249,0.468508622798644,2.06962696591213,0,0.189106080167819,0.175951124163949,0.43839146485515,0.556094498451196,0,0.411564272815887,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32833492815819,0.486412857275134,0.146199987425332,0.439100230582101,0.268412837520744,0,1.02904612379284,1.65209391491899,0.528901133327089,0,0.232236671860439,0,0.403367049246685,0.22237804384487,0.760902504450237,0.474529061544512,0.329397909448022,0.502670417600539,0.596869416123452,0.974820435595601,0.898819408654221,0,0.597423819763102,0.189667900953082,0.114248512609729,0,0.203651327845314,0.581857461502877,0.701358198903186,1.39120381673366,1.62371162777562,0.784993639206874,0.863780147452604,0.889357881261447,0,0,0,0.202860121388503,0.241177159752417,0,0.287696137450811,0.324270453550071,0,1.43768206527355,1.48856379067401,0.936113019343682,1.76805214562978,0.538192240565737,1.92977408545347,0.184753190166605,0,0.814824882210129,0.169745085775188,0,0.335012514883631,0,0.780534591431195,1.41871629695572,1.7717175171902,1.2756381492599,0.163863314715738,0.345369963731791,0.144649058581512,0,0,0,0.827810238914197,1.28440471990234,0.586058432961016,0,0.504941854408746,0,1.17131623288992,1.29254038639679,0.477937595905104,0.668396022247182,0,0.809621403349789,2.63030272120181,1.18586333383957,0,1.27746076687442,0.534196811001766,0.162886959353576,0,0,0,0,0.188605079755898,0,0,0,0,0.356497378384721,0,0,0,0,0.18006109403131,0,0,0.354680467284547,0.178368817602071,0,0,0,0,0,0.49465875882444,0.322928853391811,0.482503399425247,0,0.492422699235184,1.45740418314925,0.370850604021019,0.170870880797853,1.857481811669,0.370389054739423,0.188368457004691,0,0,0.169978429993855,0.139951452323658,0.414599921413271,0,0,0.203319467126849,0.216010681643603,0.836353184057875,0.655087691238533,1.07891477107857,1.32245529160537,2.09404753587224,7.12882353104861,0,0,0.299033092087958,0.165458490457098,0,0.129159823477731,0,0.234714477291508,0.13020438484395,0,0,0,0,0,0.102710957164827,0,0,0,0,0.147689527174577,0,0,0,0,0,0.233753804363138,0,0,0.0897138566094757,0,0.19318959403219,0,0.183151624267265,0.857473516316263,0.501572104035363,0.564751842617067,1.38097570952153,0.572895513439397,0.171853182343688,0,0,0,0.45032120322422,0,0.51776031175182,0.415149390336707,0,0.341467211508268,0.486213434136588,0.628839487883947,0.551530525350042,0,0.618105171716683,0.64183841918363,0,0.25347929989024,0,0.37456602987953,0.320125762024346,0.287177344778066,0.952587382566147,0.695305955669133,0,0,0.147198920134397,0.342869252385415,0.354951612318675,0,0.726732083161643,0.470546902076653,0.846146078916765,0.548783918618318,0.263069711437843,0.814824683075171,0,0.237270036248348,0.591026894253381,0,0.619747364743864,0.578719832943424,0.749431733813838,0.935726433781634,0.214871054048298,1.14772999241306,0.441182838239031,0.927471342481686 | |||
|short_description=p4@Rnf152 | |||
}} |
Revision as of 18:31, 13 September 2013
Short description: | p4@Rnf152 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rnf152_5end |
Coexpression cluster: | NA |
Association with transcript: | 58bp_to_ENSMUST00000058688, ENSMUST00000172299, NM_001160368, NM_178779, uc011wpy.1, uc011wpz.1_5end |
EntrezGene: | Rnf152 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.14e-13 | 33 |
neuronal stem cell | 2.14e-13 | 33 |
neuroblast | 2.14e-13 | 33 |
electrically signaling cell | 2.14e-13 | 33 |
CNS neuron (sensu Vertebrata) | 1.35e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.35e-12 | 23 |
electrically responsive cell | 1.29e-10 | 39 |
electrically active cell | 1.29e-10 | 39 |
neural cell | 3.31e-09 | 43 |
ectodermal cell | 6.78e-09 | 44 |
neurectodermal cell | 6.78e-09 | 44 |
neuron of the ventral spinal cord | 3.41e-07 | 3 |
embryonic cell | 5.66e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 2.38e-10 | 5 |
gray matter of spinal cord | 2.38e-10 | 5 |
posterior neural tube | 1.94e-09 | 12 |
chordal neural plate | 1.94e-09 | 12 |
spinal cord | 1.61e-08 | 6 |
dorsal region element | 1.61e-08 | 6 |
dorsum | 1.61e-08 | 6 |
organ system subdivision | 1.72e-08 | 194 |
central nervous system | 5.35e-08 | 73 |
nervous system | 1.25e-07 | 75 |
ventral horn of spinal cord | 3.41e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.