FFCP PHASE1:Mm9::chr6:72295138..72295200,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=28035|HGNC=|UniProt=Q3TIX9|association_with_transcript=0bp_to_ENSMUST00000070345,NM_138592,uc009cif.1_5end|description=CAGE_peak_1_at_Usp39_5end|id=chr6:72295138..72295200,-|ontology_enrichment_celltype=CL:0000988!7.51e-07!32;CL:0002032!7.51e-07!32;CL:0000037!7.51e-07!32;CL:0000566!7.51e-07!32;CL:0000837!7.51e-07!32|ontology_enrichment_celltype_v019_2=CL:0000988,7.51e-07,32;CL:0002032,7.51e-07,32;CL:0000037,7.51e-07,32;CL:0000837,7.51e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005057!2.73e-08!51;UBERON:0002405!7.09e-08!70;UBERON:0004177!2.04e-07!29;UBERON:0002390!3.13e-07!45;UBERON:0003061!3.13e-07!45|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.04e-07,29;UBERON:0005057,2.04e-07,29;UBERON:0002390,3.13e-07,45;UBERON:0003061,3.13e-07,45|phase1_expression=34.2718532804259,23.7303277194766,28.2099528421512,26.0119221723874,28.0501608769954,41.2983008903249,41.1158247448125,52.6823159641631,102.353401004262,125.458586108589,73.9661622734181,88.2280078488421,46.7377992712192,52.5396618538174,80.945672121206,89.6965434536929,128.719385575579,53.7862991935795,55.2571167431127,59.8389409035223,40.225476241456,48.2554022836303,51.1951586712313,26.5587421837055,30.0526158197993,20.0981187440257,29.7225777349762,33.1825698336269,22.9928337542212,24.6989527164732,35.0334206835381,69.8533740805594,92.2597181376855,0,51.1267366959756,57.6834219393968,47.1631212966073,70.7318455945374,58.600150839285,46.0700894696943,53.5290654108223,57.3758207365094,59.7177734228319,42.1754340218184,36.7998260326838,40.0131919712466,23.4717403304412,50.3638111238831,36.4679063339223,45.302166484308,43.6757635471131,41.6882436658418,50.6703470294364,53.6767985088395,47.053131879945,54.0244815675489,39.2550812716097,33.0030139057563,41.8795073979367,43.9062512795787,33.5930643858275,34.9009868031206,37.3503814366679,24.7472422252385,34.6103226898441,38.3659262070894,28.7616106097669,23.8215349299364,53.9185984004084,53.8673693943446,51.73994049244,30.8503063156108,39.977205912242,50.588700075776,58.6574282631607,42.284064184061,33.0347642998166,39.7107621444934,33.0254046500923,43.7862475264244,40.7120014030723,35.4221091978597,32.943593882163,34.3285192119325,33.004421519791,37.4178303551558,31.6065131374009,38.3982858400119,63.382823819875,58.9458168832927,35.6533321103064,36.9982267101996,46.238050692127,42.0968489477497,29.8897152025928,21.5052905806721,38.6222155362318,36.6425193542824,41.3059747318561,40.2807114941788,38.1685667594804,24.3820307087204,25.4805239706646,7.11066703153331,45.0301365303325,39.5241390141154,38.4198578211235,31.0580152835843,58.0020859369665,36.9620926271414,45.6266409394937,52.6725277480004,37.3597105554815,36.9270469353925,34.4534911907615,33.301646702364,86.2710437392965,28.6306726701425,114.999371753484,36.2357743882197,47.701767987445,50.4270263260631,50.325775528893,43.9171195517321,30.5792191947644,33.2094171771169,55.8338480197588,47.3923157484792,49.3032481043491,40.5932632787069,50.7825669128675,42.0942079578096,43.4560800480691,43.7273432034865,45.0900056694245,36.828766716381,36.1529741668623,43.5424397135326,53.0717792710717,30.3036272476523,63.6288966087621,56.7858197950678,57.0796951482957,38.8818430016145,37.760257028987,42.2775276940004,40.1043381115639,32.596624713116,86.8739011519354,59.7575213330309,42.5801720476756,50.4150184583422,41.1509928853885,33.432207986128,28.6037169607041,35.6271337605103,68.1146791693838,56.6165395652373,46.8869774002728,50.745814271198,48.3123683561058,38.7133432141182,43.5610313476787,33.0563909335638,37.0241070929708,35.5776935468124,28.9735273511589,28.957804907058,32.4182904329557,28.2368038216044,27.0769823883158,22.8071980383518,28.7610651031276,27.6465222646366,42.6888595585178,46.5128847954366,30.3985280345094,48.1300031327651,56.3080981413018,48.7697010906921,44.3304066948001,30.050845168878,30.6881700505921,32.9090333174727,28.4717436926707,33.7632857184222,27.3955377592294,26.0632978373908,29.8295053292254,33.2563181202062,32.2045694313294,30.6677560811725,65.8147616307193,47.2988842204277,41.7018621990398,39.9156602576816,37.4328300233518,35.3484532247206,32.946235841738,41.6260617302478,32.655735391006,32.0832626196681,41.799820419288,104.445036178275,99.2622925321675,97.3652946626417,103.458661908136,91.6473207059184,66.9665990185134,59.265404314867,45.884269177335,55.1868440508044,33.0666875012915,39.8190814005299,32.4519180039143,42.938409251009,49.5136861320478,48.2443521363367,58.3820080926471,57.6053891782274,60.6229712364336,46.5101535024016,44.5911471748154,34.3387827755722,34.992415210244,40.0023978108488,36.8866237208487,35.8772797231015,40.6609660076592,39.8187854759243,37.990696010497,40.9356835785678,43.729472342389,28.2830955585729,39.8329061145419,34.7680300343963,42.5459063467649,36.6872579033596,60.3280598986166,43.9299413335609,53.0053808619311,55.4423016901227,43.5155263420254,48.7496347823206,45.228130838726,35.9507194101817,53.0302019194112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| ||
|EntrezGene=28035 | |||
|HGNC= | |||
|UniProt=Q3TIX9 | |||
|association_with_transcript=0bp_to_ENSMUST00000070345,NM_138592,uc009cif.1_5end | |||
|description=CAGE_peak_1_at_Usp39_5end | |||
|id=chr6:72295138..72295200,- | |||
|ontology_enrichment_celltype=CL:0000988!7.51e-07!32;CL:0002032!7.51e-07!32;CL:0000037!7.51e-07!32;CL:0000566!7.51e-07!32;CL:0000837!7.51e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,7.51e-07,32;CL:0002032,7.51e-07,32;CL:0000037,7.51e-07,32;CL:0000837,7.51e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!2.73e-08!51;UBERON:0002405!7.09e-08!70;UBERON:0004177!2.04e-07!29;UBERON:0002390!3.13e-07!45;UBERON:0003061!3.13e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.04e-07,29;UBERON:0005057,2.04e-07,29;UBERON:0002390,3.13e-07,45;UBERON:0003061,3.13e-07,45 | |||
|phase1_expression=34.2718532804259,23.7303277194766,28.2099528421512,26.0119221723874,28.0501608769954,41.2983008903249,41.1158247448125,52.6823159641631,102.353401004262,125.458586108589,73.9661622734181,88.2280078488421,46.7377992712192,52.5396618538174,80.945672121206,89.6965434536929,128.719385575579,53.7862991935795,55.2571167431127,59.8389409035223,40.225476241456,48.2554022836303,51.1951586712313,26.5587421837055,30.0526158197993,20.0981187440257,29.7225777349762,33.1825698336269,22.9928337542212,24.6989527164732,35.0334206835381,69.8533740805594,92.2597181376855,0,51.1267366959756,57.6834219393968,47.1631212966073,70.7318455945374,58.600150839285,46.0700894696943,53.5290654108223,57.3758207365094,59.7177734228319,42.1754340218184,36.7998260326838,40.0131919712466,23.4717403304412,50.3638111238831,36.4679063339223,45.302166484308,43.6757635471131,41.6882436658418,50.6703470294364,53.6767985088395,47.053131879945,54.0244815675489,39.2550812716097,33.0030139057563,41.8795073979367,43.9062512795787,33.5930643858275,34.9009868031206,37.3503814366679,24.7472422252385,34.6103226898441,38.3659262070894,28.7616106097669,23.8215349299364,53.9185984004084,53.8673693943446,51.73994049244,30.8503063156108,39.977205912242,50.588700075776,58.6574282631607,42.284064184061,33.0347642998166,39.7107621444934,33.0254046500923,43.7862475264244,40.7120014030723,35.4221091978597,32.943593882163,34.3285192119325,33.004421519791,37.4178303551558,31.6065131374009,38.3982858400119,63.382823819875,58.9458168832927,35.6533321103064,36.9982267101996,46.238050692127,42.0968489477497,29.8897152025928,21.5052905806721,38.6222155362318,36.6425193542824,41.3059747318561,40.2807114941788,38.1685667594804,24.3820307087204,25.4805239706646,7.11066703153331,45.0301365303325,39.5241390141154,38.4198578211235,31.0580152835843,58.0020859369665,36.9620926271414,45.6266409394937,52.6725277480004,37.3597105554815,36.9270469353925,34.4534911907615,33.301646702364,86.2710437392965,28.6306726701425,114.999371753484,36.2357743882197,47.701767987445,50.4270263260631,50.325775528893,43.9171195517321,30.5792191947644,33.2094171771169,55.8338480197588,47.3923157484792,49.3032481043491,40.5932632787069,50.7825669128675,42.0942079578096,43.4560800480691,43.7273432034865,45.0900056694245,36.828766716381,36.1529741668623,43.5424397135326,53.0717792710717,30.3036272476523,63.6288966087621,56.7858197950678,57.0796951482957,38.8818430016145,37.760257028987,42.2775276940004,40.1043381115639,32.596624713116,86.8739011519354,59.7575213330309,42.5801720476756,50.4150184583422,41.1509928853885,33.432207986128,28.6037169607041,35.6271337605103,68.1146791693838,56.6165395652373,46.8869774002728,50.745814271198,48.3123683561058,38.7133432141182,43.5610313476787,33.0563909335638,37.0241070929708,35.5776935468124,28.9735273511589,28.957804907058,32.4182904329557,28.2368038216044,27.0769823883158,22.8071980383518,28.7610651031276,27.6465222646366,42.6888595585178,46.5128847954366,30.3985280345094,48.1300031327651,56.3080981413018,48.7697010906921,44.3304066948001,30.050845168878,30.6881700505921,32.9090333174727,28.4717436926707,33.7632857184222,27.3955377592294,26.0632978373908,29.8295053292254,33.2563181202062,32.2045694313294,30.6677560811725,65.8147616307193,47.2988842204277,41.7018621990398,39.9156602576816,37.4328300233518,35.3484532247206,32.946235841738,41.6260617302478,32.655735391006,32.0832626196681,41.799820419288,104.445036178275,99.2622925321675,97.3652946626417,103.458661908136,91.6473207059184,66.9665990185134,59.265404314867,45.884269177335,55.1868440508044,33.0666875012915,39.8190814005299,32.4519180039143,42.938409251009,49.5136861320478,48.2443521363367,58.3820080926471,57.6053891782274,60.6229712364336,46.5101535024016,44.5911471748154,34.3387827755722,34.992415210244,40.0023978108488,36.8866237208487,35.8772797231015,40.6609660076592,39.8187854759243,37.990696010497,40.9356835785678,43.729472342389,28.2830955585729,39.8329061145419,34.7680300343963,42.5459063467649,36.6872579033596,60.3280598986166,43.9299413335609,53.0053808619311,55.4423016901227,43.5155263420254,48.7496347823206,45.228130838726,35.9507194101817,53.0302019194112,42.0848435392289,45.8533822417967,41.1291285019913,38.7496432618573,32.9421366784422,38.9299832855047,36.1284569309853,21.2392221343941,50.2555916840812,42.0229744181004,29.2337873621642,39.2751517531428,29.2063390546731,30.7529668870183,26.9014959813354,27.8067955140083,33.8159330991323,28.4630243152497,23.721174947083,22.46901397975,52.21771726908,63.256396369767,40.0810255509078,35.1133662611702,30.322698992352,30.9352158731987,33.1866794534913,51.6277757740163,63.1259571174184,36.1666572810138,35.2856581294767,32.7772786192688,41.5556052754994,41.7803204010978,54.9872014145955,28.5651219897254,40.0518652342701,95.3459514852018,39.6262786489387,72.0406711468178,105.109599008618,98.2831497314171,80.7586951419025,48.4438525482488,48.4232025039857,55.8327894169872,24.821436068393,64.374374693761,44.323643833653,38.4499013325612,40.3540411307925,34.0645599444037,34.7950013672837,30.8297389855503,32.9812486899877,29.6818288838206,21.1255366449555,104.283193656575,39.6218847016544,39.7100377097034,34.2234091485524,36.8105496911534,32.777488345211,34.8550998777889,39.191519838029,48.235298435827,63.7782078980656,67.3990214643405,60.9901462812384,52.3031055448624,54.9503620831826,69.2477986471647,63.7335036576234,59.0083623700357,54.6889295315858,57.4512260709105,48.8677617749034,54.0306259183949,50.6147449386939,54.8687868564806,50.9922760693746,44.4132228289962,31.062062555284,72.5894067533192,72.3093684272374,56.4092310983304,32.455851797408,41.4778270747112,35.5314151078494,41.8018339204178,34.6084751784401,41.2268845110459,38.6673198666029,45.8316410751517,28.1839219043648,54.1215190618807,46.0790277407717,37.1262375127493,41.4295506966283,47.1268105343573,44.0096264989047,74.3117408702705,55.0654325293423,58.7323603794222,54.4559046232979,64.5608540894186,39.342510808303,38.4486839096794,42.85529190569,39.4730627797933,30.3236654116557,44.358877480792,34.707246815038,33.0554521368685,30.4119473923129,29.5218310431852,23.8146845641537,31.7523053088904,29.7080199514106,28.0218412546248,35.9165365127929,36.344140752854,34.9627338133895,28.3739066037312,30.086708242892,28.8915797875065,33.0843116856455,30.3660434968802,34.1990624869196,28.9262762491686,37.5965322010685,31.5569148210303,29.3543357479179,25.7815557196904,31.4521787607511,33.9515635326809,45.9651463405821,38.8326470019378,38.0321765665488,31.3712864592903,35.074035640003,34.084571836202 | |||
|short_description=p1@Usp39 | |||
}} | |||
Revision as of 10:36, 14 September 2013
| Short description: | p1@Usp39 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Usp39_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENSMUST00000070345, NM_138592, uc009cif.1_5end |
| EntrezGene: | Usp39 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic cell | 7.51e-07 | 32 |
| hematopoietic oligopotent progenitor cell | 7.51e-07 | 32 |
| hematopoietic stem cell | 7.51e-07 | 32 |
| hematopoietic multipotent progenitor cell | 7.51e-07 | 32 |
| Ontology term | p-value | n |
|---|---|---|
| hemopoietic organ | 2.04e-07 | 29 |
| immune organ | 2.04e-07 | 29 |
| hematopoietic system | 3.13e-07 | 45 |
| blood island | 3.13e-07 | 45 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
