FFCP PHASE1:Mm9::chr10:114622071..114622085,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=216343|HGNC=|MCL_coexpression_id=503|UniProt=Q8CGV2|association_with_transcript=0bp_to_ENSMUST00000006949,NM_173391,uc007haw.2_5end|description=CAGE_peak_1_at_Tph2_5end|id=chr10:114622071..114622085,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002610,1.35e-16,3;CL:0000120,5.67e-16,3;CL:0000117,7.38e-14,23;CL:0000337,7.38e-14,23;CL:0000540,2.22e-09,33;CL:0000047,2.22e-09,33;CL:0000031,2.22e-09,33;CL:0000404,2.22e-09,33;CL:0002614,2.62e-08,3;CL:0000393,8.64e-08,39;CL:0000211,8.64e-08,39;CL:0002319,5.64e-07,43;CL:0000221,8.54e-07,44;CL:0000133,8.54e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002298!2.82e-08!6|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.35e-16,3;UBERON:0002275,1.35e-16,3;UBERON:0002950,7.23e-13,4;UBERON:0001891,7.23e-13,4;UBERON:0009616,7.23e-13,4;UBERON:0010286,7.23e-13,4;UBERON:0001017,2.38e-12,73;UBERON:0001016,5.74e-12,75;UBERON:0001896,8.05e-12,2;UBERON:0002298,8.05e-12,2;UBERON:0005290,8.05e-12,2;UBERON:0010096,8.05e-12,2;UBERON:0000073,1.72e-10,54;UBERON:0004121,5.08e-09,95;UBERON:0000924,5.08e-09,95;UBERON:0006601,5.08e-09,95;UBERON:0002038,2.62e-08,3;UBERON:0009663,2.62e-08,3;UBERON:0009661,2.62e-08,3;UBERON:0000125,2.62e-08,3;UBERON:0002308,2.62e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04103896362567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.45096213891115,7.93486468908049,3.1691570175309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,58.361416929676,1.0214987046815,75.1135947623031,0,0,0,119.490323572591,0,36.213184723104,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0.304465478312141,0,0.301445281105245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.8083372415597,3.20250421973039,0,0,0,45.5055817585437,11.1946471516753,0,0.124406970610093,0,0,0,0.229902104433473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.6651626876683,49.4633317419097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0,1.19707462020309,0.341467211508268,0,0,0.551530525350042,1.11123363900808,0.206035057238894,0.64183841918363,0.758091635291392,0.760437899670719,0.943131706930381,0.561849044819294,0.512201219238954,0.34461281373368,0,0.115884325944855,0.77163688185482,0.824171801606613,0.294397840268795,0.685738504770831,0.354951612318675,0.238436189947321,0.290692833264657,0.282328141245992,0.169229215783353,0.365855945745545,0.263069711437843,0.679020569229309,0,0.118635018124174,0.394017929502254,0,0.309873682371932,0.385813221962283,0.499621155875892,0.233931608445408,0.214871054048298,0,0,0|short_description=p1@Tph2}} | ||
|EntrezGene=216343 | |||
|HGNC= | |||
|MCL_coexpression_id=503 | |||
|UniProt=Q8CGV2 | |||
|association_with_transcript=0bp_to_ENSMUST00000006949,NM_173391,uc007haw.2_5end | |||
|description=CAGE_peak_1_at_Tph2_5end | |||
|id=chr10:114622071..114622085,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.35e-16,3;CL:0000120,5.67e-16,3;CL:0000117,7.38e-14,23;CL:0000337,7.38e-14,23;CL:0000540,2.22e-09,33;CL:0000047,2.22e-09,33;CL:0000031,2.22e-09,33;CL:0000404,2.22e-09,33;CL:0002614,2.62e-08,3;CL:0000393,8.64e-08,39;CL:0000211,8.64e-08,39;CL:0002319,5.64e-07,43;CL:0000221,8.54e-07,44;CL:0000133,8.54e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!2.82e-08!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.35e-16,3;UBERON:0002275,1.35e-16,3;UBERON:0002950,7.23e-13,4;UBERON:0001891,7.23e-13,4;UBERON:0009616,7.23e-13,4;UBERON:0010286,7.23e-13,4;UBERON:0001017,2.38e-12,73;UBERON:0001016,5.74e-12,75;UBERON:0001896,8.05e-12,2;UBERON:0002298,8.05e-12,2;UBERON:0005290,8.05e-12,2;UBERON:0010096,8.05e-12,2;UBERON:0000073,1.72e-10,54;UBERON:0004121,5.08e-09,95;UBERON:0000924,5.08e-09,95;UBERON:0006601,5.08e-09,95;UBERON:0002038,2.62e-08,3;UBERON:0009663,2.62e-08,3;UBERON:0009661,2.62e-08,3;UBERON:0000125,2.62e-08,3;UBERON:0002308,2.62e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04103896362567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.45096213891115,7.93486468908049,3.1691570175309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,58.361416929676,1.0214987046815,75.1135947623031,0,0,0,119.490323572591,0,36.213184723104,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0.304465478312141,0,0.301445281105245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.8083372415597,3.20250421973039,0,0,0,45.5055817585437,11.1946471516753,0,0.124406970610093,0,0,0,0.229902104433473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.6651626876683,49.4633317419097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0,1.19707462020309,0.341467211508268,0,0,0.551530525350042,1.11123363900808,0.206035057238894,0.64183841918363,0.758091635291392,0.760437899670719,0.943131706930381,0.561849044819294,0.512201219238954,0.34461281373368,0,0.115884325944855,0.77163688185482,0.824171801606613,0.294397840268795,0.685738504770831,0.354951612318675,0.238436189947321,0.290692833264657,0.282328141245992,0.169229215783353,0.365855945745545,0.263069711437843,0.679020569229309,0,0.118635018124174,0.394017929502254,0,0.309873682371932,0.385813221962283,0.499621155875892,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p1@Tph2 | |||
}} |
Revision as of 15:45, 12 September 2013
Short description: | p1@Tph2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tph2_5end |
Coexpression cluster: | MCL_coexpression_mm9:503 |
Association with transcript: | 0bp_to_ENSMUST00000006949, NM_173391, uc007haw.2_5end |
EntrezGene: | Tph2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.35e-16 | 3 |
granule cell | 5.67e-16 | 3 |
CNS neuron (sensu Vertebrata) | 7.38e-14 | 23 |
neuroblast (sensu Vertebrata) | 7.38e-14 | 23 |
neuron | 2.22e-09 | 33 |
neuronal stem cell | 2.22e-09 | 33 |
neuroblast | 2.22e-09 | 33 |
electrically signaling cell | 2.22e-09 | 33 |
neuron of the substantia nigra | 2.62e-08 | 3 |
electrically responsive cell | 8.64e-08 | 39 |
electrically active cell | 8.64e-08 | 39 |
neural cell | 5.64e-07 | 43 |
ectodermal cell | 8.54e-07 | 44 |
neurectodermal cell | 8.54e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 1.35e-16 | 3 |
reticular formation | 1.35e-16 | 3 |
regional part of midbrain | 7.23e-13 | 4 |
midbrain | 7.23e-13 | 4 |
presumptive midbrain | 7.23e-13 | 4 |
midbrain neural tube | 7.23e-13 | 4 |
central nervous system | 2.38e-12 | 73 |
nervous system | 5.74e-12 | 75 |
medulla oblongata | 8.05e-12 | 2 |
brainstem | 8.05e-12 | 2 |
myelencephalon | 8.05e-12 | 2 |
future myelencephalon | 8.05e-12 | 2 |
regional part of nervous system | 1.72e-10 | 54 |
ectoderm-derived structure | 5.08e-09 | 95 |
ectoderm | 5.08e-09 | 95 |
presumptive ectoderm | 5.08e-09 | 95 |
substantia nigra | 2.62e-08 | 3 |
telencephalic nucleus | 2.62e-08 | 3 |
midbrain nucleus | 2.62e-08 | 3 |
neural nucleus | 2.62e-08 | 3 |
nucleus of brain | 2.62e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.