FFCP PHASE1:Mm9::chr10:75384307..75384370,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20587|HGNC=|MCL_coexpression_id=108|UniProt=Q9Z0H3,D6RDC4,F6Y234,Q3UDA4,Q6ZWP4|association_with_transcript=0bp_to_ENSMUST00000000925,ENSMUST00000121304,ENSMUST00000140388,ENSMUST00000169174,NM_001161853,NM_011418,uc007ftm.2,uc007ftn.2,uc011xgt.1_5end|description=CAGE_peak_1_at_Smarcb1_5end|id=chr10:75384307..75384370,-|ontology_enrichment_celltype=CL:0000221!6.56e-16!44;CL:0000133!6.56e-16!44;CL:0002319!7.19e-16!43;CL:0000055!1.39e-15!50;CL:0000393!6.03e-14!39;CL:0000211!6.03e-14!39;CL:0000540!2.50e-13!33;CL:0000047!2.50e-13!33;CL:0000031!2.50e-13!33;CL:0000404!2.50e-13!33;CL:0000117!4.66e-10!23;CL:0000337!4.66e-10!23;CL:0002321!3.97e-08!70;CL:0000220!3.97e-08!70|ontology_enrichment_celltype_v019_2=CL:0000221,6.56e-16,44;CL:0000133,6.56e-16,44;CL:0002319,7.19e-16,43;CL:0000393,6.03e-14,39;CL:0000211,6.03e-14,39;CL:0000540,2.50e-13,33;CL:0000047,2.50e-13,33;CL:0000031,2.50e-13,33;CL:0000404,2.50e-13,33;CL:0000117,4.66e-10,23;CL:0000337,4.66e-10,23;CL:0002321,3.97e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.44e-21!73;UBERON:0005743!6.44e-21!73;UBERON:0000073!1.07e-19!75;UBERON:0001016!1.07e-19!75;UBERON:0004121!3.36e-17!102;UBERON:0000924!3.36e-17!102;UBERON:0006601!3.36e-17!102;UBERON:0002346!1.82e-15!71;UBERON:0003075!1.82e-15!71;UBERON:0007284!1.82e-15!71;UBERON:0001049!4.89e-13!52;UBERON:0005068!4.89e-13!52;UBERON:0006241!4.89e-13!52;UBERON:0007135!4.89e-13!52;UBERON:0003056!9.13e-13!49;UBERON:0000033!1.10e-11!63;UBERON:0003080!2.18e-11!40;UBERON:0002780!2.36e-11!39;UBERON:0001890!2.36e-11!39;UBERON:0006240!2.36e-11!39;UBERON:0000955!2.40e-11!50;UBERON:0006238!2.40e-11!50;UBERON:0002616!2.83e-11!49;UBERON:0002020!3.44e-11!34;UBERON:0000153!2.15e-09!94;UBERON:0002791!3.09e-09!29;UBERON:0003528!3.09e-09!29;UBERON:0001893!3.09e-09!29;UBERON:0007811!3.31e-08!86;UBERON:0000956!6.12e-07!21;UBERON:0001869!6.12e-07!21;UBERON:0000203!6.12e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.44e-21,73;UBERON:0001016,1.07e-19,75;UBERON:0004121,3.79e-17,95;UBERON:0000924,3.79e-17,95;UBERON:0006601,3.79e-17,95;UBERON:0002346,9.41e-16,64;UBERON:0003075,9.41e-16,64;UBERON:0007284,9.41e-16,64;UBERON:0000073,2.99e-13,54;UBERON:0010371,3.93e-13,73;UBERON:0001049,4.89e-13,52;UBERON:0005068,4.89e-13,52;UBERON:0006241,4.89e-13,52;UBERON:0007135,4.89e-13,52;UBERON:0003056,9.13e-13,49;UBERON:0000955,2.01e-11,47;UBERON:0006238,2.01e-11,47;UBERON:0003080,2.18e-11,40;UBERON:0002616,2.34e-11,46;UBERON:0002780,2.36e-11,39;UBERON:0001890,2.36e-11,39;UBERON:0006240,2.36e-11,39;UBERON:0002020,3.44e-11,34;UBERON:0010314,3.50e-10,92;UBERON:0003528,3.09e-09,29;UBERON:0002791,3.09e-09,29;UBERON:0001893,3.09e-09,29;UBERON:0000956,6.12e-07,21;UBERON:0001869,6.12e-07,21;UBERON:0000203,6.12e-07,21|phase1_expression=82.6368051060737,31.4077866875425,22.7499619694768,20.8700305801713,23.5420993074783,48.1813510387124,49.2922671656559,54.6191658157868,14.5012383816217,15.6823232635736,43.1469279928273,45.2308141503557,33.7265437964475,43.8850420143367,52.298232605059,43.9371330235922,46.8706458345858,62.4615087409311,53.2004002390266,63.6584477697045,51.7913637020015,83.4043990087437,60.598351080233,52.9574919446176,49.3229954294416,27.563134277521,43.9377236082256,45.0334876313508,49.2160656392008,49.6499355627064,65.8539616646255,112.400429202355,86.7241350494244,110.937176710807,64.9916144440368,70.6497242773593,66.1508714290076,42.2716947044277,40.6294379152376,36.1231383341921,38.8232782100469,28.6879103682547,33.9857247121808,115.447382083604,99.6535233887828,105.539382492967,185.426748610485,127.980766795322,123.463634696773,91.5764824639875,105.689748327149,163.877923376068,47.3146949082817,36.9934692425786,32.601098516819,79.4931657351076,94.5560351797897,60.8493068887382,209.195220528824,223.234193252798,207.896700350027,143.331237065243,177.858959222228,88.6401221522178,106.797567157233,92.362414942993,171.371263216527,267.800158809124,171.398929145914,193.733521505976,220.6308844576,116.259950652348,109.771664852952,200.639929114095,160.637009426564,211.420320920305,78.182275509566,71.8879713419607,76.342447028353,212.732582108803,165.592634920361,203.677127887693,78.7296057183894,76.5357149643085,79.3022905961644,122.270862971572,99.2330615169747,143.900372177132,47.4803232199064,60.6839627657488,34.7837386442013,36.9982267101996,21.759082678648,47.4938808641279,33.1385972898311,35.3941240806895,42.4142148797891,141.457167739788,154.83245874331,150.522658741405,80.4215926924846,114.210564898743,127.402619853323,135.102673599133,55.638197539882,62.8332466378245,65.2126534069071,29.8019926066747,41.6889992671946,61.4550455728375,114.673800992416,102.300400712879,81.4072705313886,76.1149334790744,49.6224344112674,69.9962913706292,71.9337356107028,46.7055922851315,58.3842964286917,65.6773410786481,49.2476586166678,50.4270263260631,44.7340226923493,76.1230072230023,60.5300982690885,46.4931840479636,54.156436276676,47.3923157484792,48.7949671960568,79.389038884556,81.4351073017155,156.565322732629,77.0041738451785,72.3674744244835,71.8946634176078,81.4451140600143,71.796751514473,49.513974302817,51.302719962036,50.5060454127538,125.045745687158,153.344703657126,121.181813359,101.122932767765,82.800419467166,102.106635067025,99.4175297578723,62.8649190895808,145.077259243803,120.271466986733,125.101249280568,103.241189973388,90.6434032475449,77.311980967921,73.0526584248199,101.70651034425,45.6438571753603,47.3520149091076,58.2535173760965,80.1576739712392,77.6281258537428,68.6036454166467,77.8890180075342,68.8674811115913,68.4945981219959,59.0636219666036,55.5325940897212,38.4157976387988,55.6212292707564,47.4443971188585,35.9945514383599,35.2341969695051,41.7145219052996,29.1227928710007,73.8117719460087,125.13200865321,35.3548097792664,53.947915599363,124.347050062041,110.776892477429,84.4081871659711,77.8498405046102,63.1553644519432,68.8616766527464,53.1472548929853,48.4214926888592,55.7964163536598,41.5819026566005,49.5208781282565,54.8279839279075,49.2794753714303,37.8368419183298,130.681183756673,106.136868214438,98.05573003558,97.5489860379055,88.4423341484373,68.3122885731703,64.4380313296182,37.0501471428801,45.3726323461573,43.4358017004738,26.0878311836691,80.9198762723056,82.7513369426585,74.8790834241563,71.6096228501415,74.7649195232492,60.8555785757593,48.3329510917362,28.3736646856312,60.1289494881898,41.6927798929328,50.6111688829165,62.7195722960267,49.2528811996868,45.7463404480876,30.8763853672555,53.9479315286486,126.011788827372,105.764269710875,104.223482665966,97.1617627914399,92.2959478504405,76.1739650835244,66.930841215225,74.8766934504407,62.2315777913058,75.9004698809639,54.5664838003408,59.0582637981363,48.8913818005509,63.3323392544944,53.3027570142335,36.8823204764277,31.1808523324348,71.6055631345552,58.840266669286,80.328123234571,21.9649706667804,111.689909673355,113.617674590322,114.605247593849,117.333679794703,118.083297263669,116.061377623421,110.513321557246,107.257899853451,94.4737789292191,80.00900778903,83.3188300172537,112.181330310371,71.1816012375128,63.5134973444262,23.8941249011933,121.390318077491,92.8133319881786,60.1650204421315,73.8254732201932,52.8788454463555,46.0002361839434,59.9830653637884,60.9610517037873,41.4008152895919,33.7339547439996,22.6898195146011,68.0879211507576,132.885087395107,153.936833701478,127.744872878829,93.4583031294782,106.307815290834,101.855843752713,87.9903702941192,72.0442143755591,62.7022929756908,37.7103560673985,47.8170133530292,60.7106244376605,65.0776459974802,75.6820660979885,75.9972365819634,50.4261847369642,63.7863038916153,60.1465500408441,84.412228996958,71.299893037339,70.6381713767591,57.4115756428306,70.0061210011959,53.3732270180706,54.1612120492556,49.6137905957881,45.8241896647254,122.738365509481,91.9003991413356,84.3521711818268,74.2263450851364,71.4045583450001,69.994595773722,58.9319139321645,55.4922597006143,49.5129197974649,38.5230374113894,65.9520738260503,93.2983247314428,116.648235772254,109.087116661011,104.877776663918,98.5014211611237,82.032709813382,79.0340616002777,70.9897761762062,63.2950396564136,50.4052510951265,61.3061574018666,129.946863000995,119.1447103112,88.3461596249006,88.9762677467383,78.4791351385996,65.9873017864629,62.6203595220207,61.1856686685775,62.9468222970299,61.8064514888832,53.7967501683433,56.668774726154,52.594605981706,45.5728071066575,63.7099686183566,60.2877116415677,60.2705772747042,50.8088632304661,55.7416952090011,69.5976172215607,64.953618860957,31.0974704501925,79.0652579663893,87.4617949363636,87.6530135562277,76.1309597782536,96.5966352876606,98.2012066606611,100.578352534539,91.4152042545168,81.5656336171568,96.8211782975903,148.208332350204,124.894785374523,122.586728931468,84.358030822698,112.562268331227,90.2671626489569,80.2310687363831,70.2579545184629,84.4017521226474,73.0294941997375,73.0020383683891,70.9235043611647,64.1444326168695,71.003894017,68.175901650313,64.2996483232149,71.6165134339207,63.6600427530227,66.7579159301357,63.0011378175221,72.3454122533226,73.4749837499657,62.9471541460927,66.2779659843418,61.7357535524569,71.1608852368999,79.3907402267833,74.7117980483474,68.4452733783143,67.8982148705863,72.248726037622,72.5978035107903,75.2985119432228,64.7635996157338,68.4818468983052,116.161918741145,78.8349520461026,58.6597977551854,53.752021311345,56.471403294596,52.1702630145948|short_description=p1@Smarcb1}} | ||
|EntrezGene=20587 | |||
|HGNC= | |||
|MCL_coexpression_id=108 | |||
|UniProt=Q9Z0H3,D6RDC4,F6Y234,Q3UDA4,Q6ZWP4 | |||
|association_with_transcript=0bp_to_ENSMUST00000000925,ENSMUST00000121304,ENSMUST00000140388,ENSMUST00000169174,NM_001161853,NM_011418,uc007ftm.2,uc007ftn.2,uc011xgt.1_5end | |||
|description=CAGE_peak_1_at_Smarcb1_5end | |||
|id=chr10:75384307..75384370,- | |||
|ontology_enrichment_celltype=CL:0000221!6.56e-16!44;CL:0000133!6.56e-16!44;CL:0002319!7.19e-16!43;CL:0000055!1.39e-15!50;CL:0000393!6.03e-14!39;CL:0000211!6.03e-14!39;CL:0000540!2.50e-13!33;CL:0000047!2.50e-13!33;CL:0000031!2.50e-13!33;CL:0000404!2.50e-13!33;CL:0000117!4.66e-10!23;CL:0000337!4.66e-10!23;CL:0002321!3.97e-08!70;CL:0000220!3.97e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.56e-16,44;CL:0000133,6.56e-16,44;CL:0002319,7.19e-16,43;CL:0000393,6.03e-14,39;CL:0000211,6.03e-14,39;CL:0000540,2.50e-13,33;CL:0000047,2.50e-13,33;CL:0000031,2.50e-13,33;CL:0000404,2.50e-13,33;CL:0000117,4.66e-10,23;CL:0000337,4.66e-10,23;CL:0002321,3.97e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.44e-21!73;UBERON:0005743!6.44e-21!73;UBERON:0000073!1.07e-19!75;UBERON:0001016!1.07e-19!75;UBERON:0004121!3.36e-17!102;UBERON:0000924!3.36e-17!102;UBERON:0006601!3.36e-17!102;UBERON:0002346!1.82e-15!71;UBERON:0003075!1.82e-15!71;UBERON:0007284!1.82e-15!71;UBERON:0001049!4.89e-13!52;UBERON:0005068!4.89e-13!52;UBERON:0006241!4.89e-13!52;UBERON:0007135!4.89e-13!52;UBERON:0003056!9.13e-13!49;UBERON:0000033!1.10e-11!63;UBERON:0003080!2.18e-11!40;UBERON:0002780!2.36e-11!39;UBERON:0001890!2.36e-11!39;UBERON:0006240!2.36e-11!39;UBERON:0000955!2.40e-11!50;UBERON:0006238!2.40e-11!50;UBERON:0002616!2.83e-11!49;UBERON:0002020!3.44e-11!34;UBERON:0000153!2.15e-09!94;UBERON:0002791!3.09e-09!29;UBERON:0003528!3.09e-09!29;UBERON:0001893!3.09e-09!29;UBERON:0007811!3.31e-08!86;UBERON:0000956!6.12e-07!21;UBERON:0001869!6.12e-07!21;UBERON:0000203!6.12e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.44e-21,73;UBERON:0001016,1.07e-19,75;UBERON:0004121,3.79e-17,95;UBERON:0000924,3.79e-17,95;UBERON:0006601,3.79e-17,95;UBERON:0002346,9.41e-16,64;UBERON:0003075,9.41e-16,64;UBERON:0007284,9.41e-16,64;UBERON:0000073,2.99e-13,54;UBERON:0010371,3.93e-13,73;UBERON:0001049,4.89e-13,52;UBERON:0005068,4.89e-13,52;UBERON:0006241,4.89e-13,52;UBERON:0007135,4.89e-13,52;UBERON:0003056,9.13e-13,49;UBERON:0000955,2.01e-11,47;UBERON:0006238,2.01e-11,47;UBERON:0003080,2.18e-11,40;UBERON:0002616,2.34e-11,46;UBERON:0002780,2.36e-11,39;UBERON:0001890,2.36e-11,39;UBERON:0006240,2.36e-11,39;UBERON:0002020,3.44e-11,34;UBERON:0010314,3.50e-10,92;UBERON:0003528,3.09e-09,29;UBERON:0002791,3.09e-09,29;UBERON:0001893,3.09e-09,29;UBERON:0000956,6.12e-07,21;UBERON:0001869,6.12e-07,21;UBERON:0000203,6.12e-07,21 | |||
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| |||
|short_description=p1@Smarcb1 | |||
}} |
Revision as of 17:23, 12 September 2013
Short description: | p1@Smarcb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Smarcb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | 0bp_to_ENSMUST00000000925, ENSMUST00000121304, ENSMUST00000140388, ENSMUST00000169174, NM_001161853, NM_011418, uc007ftm.2, uc007ftn.2, uc011xgt.1_5end |
EntrezGene: | Smarcb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.56e-16 | 44 |
neurectodermal cell | 6.56e-16 | 44 |
neural cell | 7.19e-16 | 43 |
electrically responsive cell | 6.03e-14 | 39 |
electrically active cell | 6.03e-14 | 39 |
neuron | 2.50e-13 | 33 |
neuronal stem cell | 2.50e-13 | 33 |
neuroblast | 2.50e-13 | 33 |
electrically signaling cell | 2.50e-13 | 33 |
CNS neuron (sensu Vertebrata) | 4.66e-10 | 23 |
neuroblast (sensu Vertebrata) | 4.66e-10 | 23 |
embryonic cell | 3.97e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.44e-21 | 73 |
nervous system | 1.07e-19 | 75 |
ectoderm-derived structure | 3.79e-17 | 95 |
ectoderm | 3.79e-17 | 95 |
presumptive ectoderm | 3.79e-17 | 95 |
neurectoderm | 9.41e-16 | 64 |
neural plate | 9.41e-16 | 64 |
presumptive neural plate | 9.41e-16 | 64 |
regional part of nervous system | 2.99e-13 | 54 |
ecto-epithelium | 3.93e-13 | 73 |
neural tube | 4.89e-13 | 52 |
neural rod | 4.89e-13 | 52 |
future spinal cord | 4.89e-13 | 52 |
neural keel | 4.89e-13 | 52 |
pre-chordal neural plate | 9.13e-13 | 49 |
brain | 2.01e-11 | 47 |
future brain | 2.01e-11 | 47 |
anterior neural tube | 2.18e-11 | 40 |
regional part of brain | 2.34e-11 | 46 |
regional part of forebrain | 2.36e-11 | 39 |
forebrain | 2.36e-11 | 39 |
future forebrain | 2.36e-11 | 39 |
gray matter | 3.44e-11 | 34 |
structure with developmental contribution from neural crest | 3.50e-10 | 92 |
brain grey matter | 3.09e-09 | 29 |
regional part of telencephalon | 3.09e-09 | 29 |
telencephalon | 3.09e-09 | 29 |
cerebral cortex | 6.12e-07 | 21 |
cerebral hemisphere | 6.12e-07 | 21 |
pallium | 6.12e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.