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MCL coexpression mm9:108

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:128185807..128185839,+p@chr10:128185807..128185839
+
Mm9::chr10:16144923..16144933,-p@chr10:16144923..16144933
-
Mm9::chr10:61246669..61246707,-p1@H2afy2
Mm9::chr10:61246709..61246722,-p2@H2afy2
Mm9::chr10:75384307..75384370,-p1@Smarcb1
Mm9::chr10:79612403..79612430,+p1@Midn
Mm9::chr10:79613193..79613227,+p3@Midn
Mm9::chr10:79613230..79613258,+p6@Midn
Mm9::chr10:79642176..79642209,+p3@Efna2
Mm9::chr10:79642238..79642276,+p2@Efna2
Mm9::chr10:82323234..82323295,+p2@Txnrd1
Mm9::chr11:102635386..102635436,+p3@Adam11
Mm9::chr11:120094272..120094294,+p2@Bahcc1
Mm9::chr11:60727277..60727318,-p1@Gm16515
Mm9::chr11:61307675..61307763,-p1@Mapk7
Mm9::chr11:69229647..69229669,-p@chr11:69229647..69229669
-
Mm9::chr11:69614276..69614297,+p@chr11:69614276..69614297
+
Mm9::chr11:69651505..69651540,-p3@Nlgn2
Mm9::chr11:97560869..97560886,-p6@Pcgf2
Mm9::chr11:97560948..97561012,-p1@Pcgf2
Mm9::chr13:56804721..56804792,+p2@Smad5
Mm9::chr14:70553492..70553540,-p1@2610301G19Rik
Mm9::chr14:76814736..76814781,+p4@Tsc22d1
Mm9::chr14:76814784..76814803,+p7@Tsc22d1
Mm9::chr15:75447105..75447159,+p1@Zfp41
Mm9::chr15:76755836..76755867,-p1@Zfp647
Mm9::chr15:79376971..79376996,-p1@Ddx17
Mm9::chr15:99532709..99532743,+p1@Smarcd1
Mm9::chr16:94592057..94592160,-p1@Pigp
Mm9::chr17:35031460..35031518,+p1@Zbtb12
Mm9::chr17:35031524..35031539,+p4@Zbtb12
Mm9::chr17:35972387..35972425,-p@chr17:35972387..35972425
-
Mm9::chr17:35975164..35975188,-p1@Tubb5
Mm9::chr17:37139472..37139514,+p1@Zfp57
Mm9::chr17:37140628..37140631,+p2@Zfp57
Mm9::chr17:56615885..56615903,-p3@Ptprs
Mm9::chr17:56615909..56615916,-p8@Ptprs
Mm9::chr18:34811357..34811395,-p1@Cdc23
Mm9::chr18:37906625..37906677,+p1@Pcdhga10
Mm9::chr18:37911255..37911306,+p1@Pcdhgb7
Mm9::chr19:46574657..46574687,+p@chr19:46574657..46574687
+
Mm9::chr19:46574691..46574720,+p@chr19:46574691..46574720
+
Mm9::chr19:7491617..7491719,+p2@2700081O15Rik
Mm9::chr19:7492076..7492140,+p1@2700081O15Rik
Mm9::chr1:120286000..120286042,+p1@Clasp1
Mm9::chr1:173934221..173934235,-p@chr1:173934221..173934235
-
Mm9::chr1:173934269..173934280,-p@chr1:173934269..173934280
-
Mm9::chr1:192803074..192803111,-p1@Vash2
Mm9::chr1:192803140..192803151,-p4@Vash2
Mm9::chr1:88483700..88483731,+p1@Cops7b
Mm9::chr2:152222298..152222320,-p@chr2:152222298..152222320
-
Mm9::chr2:152223783..152223812,-p4@Sox12
Mm9::chr2:152223852..152223872,-p7@Sox12
Mm9::chr2:152223881..152223933,-p3@Sox12
Mm9::chr2:160556994..160557036,+p1@Plcg1
Mm9::chr2:164860270..164860320,-p1@Ncoa5
Mm9::chr2:165213716..165213732,-p2@Zfp334
Mm9::chr2:17970414..17970449,-p1@2810030E01Rik
Mm9::chr2:26170979..26170986,+p7@Gpsm1
Mm9::chr2:27331142..27331218,-p1@Brd3
Mm9::chr2:28695794..28695878,-p1@Gtf3c4
Mm9::chr2:4803250..4803298,+p3@Sephs1
Mm9::chr2:78709277..78709299,+p6@Ube2e3
Mm9::chr3:104855866..104855905,-p2@Cttnbp2nl
Mm9::chr3:38784234..38784253,+p@chr3:38784234..38784253
+
Mm9::chr3:88335826..88335917,+p1@Mex3a
Mm9::chr3:88336236..88336318,+p2@Mex3a
Mm9::chr3:88336634..88336687,+p@chr3:88336634..88336687
+
Mm9::chr3:88341286..88341299,+p@chr3:88341286..88341299
+
Mm9::chr3:94914935..94915009,+p1@Vps72
Mm9::chr3:97101729..97101756,-p3@ENSMUST00000110986
p3@uc008qou.1
Mm9::chr3:97101775..97101839,-p1@ENSMUST00000110986
p1@uc008qou.1
Mm9::chr3:97101844..97101861,-p2@ENSMUST00000110986
p2@uc008qou.1
Mm9::chr4:120597555..120597637,-p1@Dem1
Mm9::chr4:129419519..129419556,-p1@Khdrbs1
Mm9::chr4:147504884..147504939,+p2@Mad2l2
Mm9::chr4:14791238..14791297,+p2@Tmem55a
Mm9::chr4:148892304..148892318,+p4@Ctnnbip1
Mm9::chr4:41082602..41082671,+p4@Ube2r2
Mm9::chr5:108494537..108494559,-p@chr5:108494537..108494559
-
Mm9::chr5:108890433..108890444,+p4@Pcgf3
Mm9::chr5:137748749..137748804,-p2@Srrt
Mm9::chr5:137974398..137974426,-p2@Gnb2
Mm9::chr5:141124972..141125006,-p1@Ttyh3
Mm9::chr5:143579262..143579320,-p1@Tnrc18
Mm9::chr5:21151796..21151850,+p1@Armc10
Mm9::chr5:24107676..24107722,-p4@Smarcd3
Mm9::chr5:34892244..34892280,+p2@Sh3bp2
Mm9::chr5:39075982..39076052,-p1@Zfp518b
Mm9::chr5:91360115..91360138,+p2@Mthfd2l
Mm9::chr6:87931623..87931639,-p1@H1fx
Mm9::chr7:112936020..112936037,-p2@Dchs1
Mm9::chr7:112936058..112936069,-p3@Dchs1
Mm9::chr7:112936081..112936153,-p1@Dchs1
Mm9::chr7:128178095..128178232,+p1@Mettl9
Mm9::chr7:137836100..137836140,+p4@Tacc2
Mm9::chr7:27980665..27980693,-p3@Gm5161
p4@Snrpa
Mm9::chr7:52124941..52124944,-p9@Ptov1
Mm9::chr7:52124957..52124988,-p2@Ptov1
Mm9::chr7:6124135..6124158,+p2@Zfp444
Mm9::chr7:87171256..87171280,+p4@Zfp710
Mm9::chr7:88005795..88005858,+p1@Zscan2
Mm9::chr7:89079517..89079536,-p2@Hdgfrp3
Mm9::chr7:90015837..90015867,+p1@Mex3b
Mm9::chr8:86521512..86521553,+p3@Samd1
Mm9::chr8:92872242..92872285,-p1@Tox3
Mm9::chr9:106789390..106789425,-p1@Rbm15b
Mm9::chr9:21420674..21420725,+p1@Smarca4
Mm9::chr9:21420744..21420755,+p3@Smarca4
Mm9::chr9:21420812..21420815,+p6@Smarca4
Mm9::chr9:44134615..44134659,+p2@Dpagt1
Mm9::chr9:64988982..64989005,+p1@Igdcc3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


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