FFCP PHASE1:Mm9::chr5:42155277..42155281,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12020|HGNC=|UniProt=P97503|association_with_transcript=177bp_to_ENSMUST00000165723,NM_007524,uc008xhc.1_5end|description=CAGE_peak_2_at_Nkx3-2_5end|id=chr5:42155277..42155281,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002679,2.44e-08,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000007!6.00e-09!8;UBERON:0003296!6.00e-09!8;UBERON:0010133!6.00e-09!8;UBERON:0002102!1.71e-07!8;UBERON:0004710!1.71e-07!8;UBERON:0005419!1.71e-07!8;UBERON:0005417!1.71e-07!8;UBERON:0005729!1.71e-07!8;UBERON:0001894!5.21e-07!10;UBERON:0006222!5.21e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002102,1.40e-26,7;UBERON:0004710,1.40e-26,7;UBERON:0005419,1.40e-26,7;UBERON:0005417,1.40e-26,7;UBERON:0005729,1.40e-26,7;UBERON:0010708,2.80e-23,8;UBERON:0000026,1.48e-15,12;UBERON:0004708,1.48e-15,12;UBERON:0002101,1.48e-15,12;UBERON:0004357,1.48e-15,12;UBERON:0004347,1.48e-15,12;UBERON:0005732,1.48e-15,12;UBERON:0005733,1.48e-15,12;UBERON:0010707,2.30e-14,13;UBERON:0003102,1.72e-08,22|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,1.07783996466421,1.70195472151037,1.75951124163949,3.5071317188412,2.22437799380478,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06644125267617,1.85789337488351,0.257734922644187,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21390318077491,0,0.377210159511796,0,0,0.258428293168221,0,0,0,0,0,0,0.36012218806262,0.388076051348264,0.428674070063185,0.177340233642274,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0,0,3.714963623338,1.11116716421827,0,0,0,0,0,0,0,0.632671987162271,0.203319467126849,0.108005340821801,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03787347584177,1.59609949360412,0.341467211508268,0,0,0,0,0,0,0.252697211763798,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561142271657738,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@Nkx3-2}} | ||
|EntrezGene=12020 | |||
|HGNC= | |||
|UniProt=P97503 | |||
|association_with_transcript=177bp_to_ENSMUST00000165723,NM_007524,uc008xhc.1_5end | |||
|description=CAGE_peak_2_at_Nkx3-2_5end | |||
|id=chr5:42155277..42155281,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002679,2.44e-08,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000007!6.00e-09!8;UBERON:0003296!6.00e-09!8;UBERON:0010133!6.00e-09!8;UBERON:0002102!1.71e-07!8;UBERON:0004710!1.71e-07!8;UBERON:0005419!1.71e-07!8;UBERON:0005417!1.71e-07!8;UBERON:0005729!1.71e-07!8;UBERON:0001894!5.21e-07!10;UBERON:0006222!5.21e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002102,1.40e-26,7;UBERON:0004710,1.40e-26,7;UBERON:0005419,1.40e-26,7;UBERON:0005417,1.40e-26,7;UBERON:0005729,1.40e-26,7;UBERON:0010708,2.80e-23,8;UBERON:0000026,1.48e-15,12;UBERON:0004708,1.48e-15,12;UBERON:0002101,1.48e-15,12;UBERON:0004357,1.48e-15,12;UBERON:0004347,1.48e-15,12;UBERON:0005732,1.48e-15,12;UBERON:0005733,1.48e-15,12;UBERON:0010707,2.30e-14,13;UBERON:0003102,1.72e-08,22 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,1.07783996466421,1.70195472151037,1.75951124163949,3.5071317188412,2.22437799380478,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06644125267617,1.85789337488351,0.257734922644187,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21390318077491,0,0.377210159511796,0,0,0.258428293168221,0,0,0,0,0,0,0.36012218806262,0.388076051348264,0.428674070063185,0.177340233642274,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0,0,3.714963623338,1.11116716421827,0,0,0,0,0,0,0,0.632671987162271,0.203319467126849,0.108005340821801,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03787347584177,1.59609949360412,0.341467211508268,0,0,0,0,0,0,0.252697211763798,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561142271657738,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@Nkx3-2 | |||
}} |
Revision as of 07:39, 14 September 2013
Short description: | p2@Nkx3-2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nkx3-2_5end |
Coexpression cluster: | NA |
Association with transcript: | 177bp_to_ENSMUST00000165723, NM_007524, uc008xhc.1_5end |
EntrezGene: | Nkx3-2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural helper lymphocyte | 2.44e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
forelimb | 1.40e-26 | 7 |
pectoral appendage | 1.40e-26 | 7 |
pectoral appendage bud | 1.40e-26 | 7 |
forelimb bud | 1.40e-26 | 7 |
forelimb/pectoral fin field | 1.40e-26 | 7 |
pectoral complex | 2.80e-23 | 8 |
appendage | 1.48e-15 | 12 |
paired limb/fin | 1.48e-15 | 12 |
limb | 1.48e-15 | 12 |
paired limb/fin bud | 1.48e-15 | 12 |
limb bud | 1.48e-15 | 12 |
limb/fin field | 1.48e-15 | 12 |
limb field | 1.48e-15 | 12 |
appendage girdle complex | 2.30e-14 | 13 |
surface structure | 1.72e-08 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.