FFCP PHASE1:Mm9::chr5:117041820..117041839,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68955|HGNC=|MCL_coexpression_id=1137|UniProt=Q8BKA3|association_with_transcript=0bp_to_ENSMUST00000076124,NM_026886,uc008zfc.1,uc008zfd.1_5end|description=CAGE_peak_1_at_Srrm4_5end|id=chr5:117041820..117041839,-|ontology_enrichment_celltype=CL:0000540!1.34e-19!33;CL:0000047!1.34e-19!33;CL:0000031!1.34e-19!33;CL:0000404!1.34e-19!33;CL:0000221!1.28e-17!44;CL:0000133!1.28e-17!44;CL:0002319!1.68e-17!43;CL:0000117!2.51e-14!23;CL:0000337!2.51e-14!23;CL:0000393!8.25e-14!39;CL:0000211!8.25e-14!39;CL:0000055!2.63e-12!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.22e-22,33;CL:0000047,2.22e-22,33;CL:0000031,2.22e-22,33;CL:0000404,2.22e-22,33;CL:0000221,4.86e-17,44;CL:0000133,4.86e-17,44;CL:0002319,6.96e-17,43;CL:0000393,1.25e-16,39;CL:0000211,1.25e-16,39;CL:0000117,2.72e-16,23;CL:0000337,2.72e-16,23;CL:0000107,9.79e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.98e-37!102;UBERON:0000924!8.98e-37!102;UBERON:0006601!8.98e-37!102;UBERON:0001017!1.57e-36!73;UBERON:0005743!1.57e-36!73;UBERON:0000073!1.68e-36!75;UBERON:0001016!1.68e-36!75;UBERON:0002346!3.79e-34!71;UBERON:0003075!3.79e-34!71;UBERON:0007284!3.79e-34!71;UBERON:0000033!1.88e-30!63;UBERON:0003056!6.35e-26!49;UBERON:0001049!9.40e-26!52;UBERON:0005068!9.40e-26!52;UBERON:0006241!9.40e-26!52;UBERON:0007135!9.40e-26!52;UBERON:0000955!3.71e-25!50;UBERON:0006238!3.71e-25!50;UBERON:0002616!2.46e-24!49;UBERON:0003080!2.48e-20!40;UBERON:0002780!7.16e-20!39;UBERON:0001890!7.16e-20!39;UBERON:0006240!7.16e-20!39;UBERON:0002020!1.83e-18!34;UBERON:0007811!2.21e-16!86;UBERON:0002791!5.53e-16!29;UBERON:0003528!5.53e-16!29;UBERON:0001893!5.53e-16!29;UBERON:0000153!2.09e-13!94;UBERON:0000956!4.79e-12!21;UBERON:0001869!4.79e-12!21;UBERON:0000203!4.79e-12!21;UBERON:0002619!2.79e-09!17;UBERON:0002021!1.53e-07!10;UBERON:0000411!1.53e-07!10;UBERON:0001950!1.53e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.12e-39,73;UBERON:0001016,3.18e-38,75;UBERON:0004121,1.72e-37,95;UBERON:0000924,1.72e-37,95;UBERON:0006601,1.72e-37,95;UBERON:0002346,3.58e-37,64;UBERON:0003075,3.58e-37,64;UBERON:0007284,3.58e-37,64;UBERON:0010371,1.52e-31,73;UBERON:0000073,9.70e-30,54;UBERON:0003056,3.13e-29,49;UBERON:0001049,3.19e-28,52;UBERON:0005068,3.19e-28,52;UBERON:0006241,3.19e-28,52;UBERON:0007135,3.19e-28,52;UBERON:0000955,1.31e-25,47;UBERON:0006238,1.31e-25,47;UBERON:0002616,1.10e-24,46;UBERON:0010314,1.23e-24,92;UBERON:0003080,8.65e-23,40;UBERON:0002780,2.94e-22,39;UBERON:0001890,2.94e-22,39;UBERON:0006240,2.94e-22,39;UBERON:0002020,1.27e-20,34;UBERON:0003528,9.24e-18,29;UBERON:0002791,9.24e-18,29;UBERON:0001893,9.24e-18,29;UBERON:0000956,3.21e-13,21;UBERON:0001869,3.21e-13,21;UBERON:0000203,3.21e-13,21;UBERON:0002619,4.71e-10,17;UBERON:0002021,1.83e-08,10;UBERON:0000411,1.83e-08,10;UBERON:0001950,1.83e-08,10;UBERON:0000970,4.28e-07,9;UBERON:0000019,4.28e-07,9;UBERON:0000047,4.28e-07,9;UBERON:0010312,4.28e-07,9;UBERON:0004088,4.28e-07,9;UBERON:0002104,4.28e-07,9;UBERON:0001456,4.28e-07,9;UBERON:0003072,4.28e-07,9;UBERON:0004128,4.28e-07,9;UBERON:0003071,4.28e-07,9;UBERON:0002410,9.79e-07,9|phase1_expression=16.4953312517938,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,9.86502165752409,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,7.63088047331563,0.219686182734472,0,0.55994568650145,1.43752564364972,0,0,0,0,0,0,58.2671407275642,57.1310257613796,59.5801519295808,0,0,0,0,0,0.299600110518405,1.92109152660777,102.963785022318,120.965320745195,98.4320819124468,23.9946826899195,24.2955395046775,59.7755100168976,61.8203288067625,96.5179725940522,27.5289702498472,40.0938241587489,29.9532739849675,55.2603545589512,53.7032467946145,46.3612899795516,17.3093459380856,15.757353080887,20.4749652020926,27.9897156199984,34.4539467533829,42.6854730939938,1.66597625333005,0.982430281388212,0,0,0,0,0.649776417447669,0,1.26399978118577,0,0,0,5.63373679106722,0,0,0,0,0,0,0.91347103775248,0,1.63286352971307,5.20455980298408,6.08930956624282,4.38169444786511,4.37095657602605,6.70255630673517,1.25666591329675,0,0.144599356919912,0,0,0,0,0,118.576222789677,83.778682725382,0.255457055208591,0,0,0,21.8694333531041,16.9275223042892,44.6072950000669,36.8507558807626,35.2887331115856,25.7657175253855,29.5279098783319,0,0,0,16.8353484709179,13.9228873970093,18.6220704591113,33.3114940139896,42.9508730831788,76.8812440410005,102.875317388734,108.412895315606,67.5215797628831,0,0.378212160335639,0,0,0.278047249225598,0,0,0,0,0,0,0,0.234526059981096,0,0.473489471170421,0,0,0,0,0,0,0,0,0.146199987425332,0,0,38.6933505357994,71.7245148283613,0,1.05780226665418,3.62590025909898,8.59275685883622,7.08771037271513,4.43703754171354,3.33567065767305,1.71203063501303,0,3.12928013975621,2.26201687920243,1.39269530428806,1.75467678407208,0,0,0,0.379335801906163,1.94222471436539,0,0.610953983535943,0.193952487167626,0.280543279561274,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18475319016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| ||
|EntrezGene=68955 | |||
|HGNC= | |||
|MCL_coexpression_id=1137 | |||
|UniProt=Q8BKA3 | |||
|association_with_transcript=0bp_to_ENSMUST00000076124,NM_026886,uc008zfc.1,uc008zfd.1_5end | |||
|description=CAGE_peak_1_at_Srrm4_5end | |||
|id=chr5:117041820..117041839,- | |||
|ontology_enrichment_celltype=CL:0000540!1.34e-19!33;CL:0000047!1.34e-19!33;CL:0000031!1.34e-19!33;CL:0000404!1.34e-19!33;CL:0000221!1.28e-17!44;CL:0000133!1.28e-17!44;CL:0002319!1.68e-17!43;CL:0000117!2.51e-14!23;CL:0000337!2.51e-14!23;CL:0000393!8.25e-14!39;CL:0000211!8.25e-14!39;CL:0000055!2.63e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.22e-22,33;CL:0000047,2.22e-22,33;CL:0000031,2.22e-22,33;CL:0000404,2.22e-22,33;CL:0000221,4.86e-17,44;CL:0000133,4.86e-17,44;CL:0002319,6.96e-17,43;CL:0000393,1.25e-16,39;CL:0000211,1.25e-16,39;CL:0000117,2.72e-16,23;CL:0000337,2.72e-16,23;CL:0000107,9.79e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.98e-37!102;UBERON:0000924!8.98e-37!102;UBERON:0006601!8.98e-37!102;UBERON:0001017!1.57e-36!73;UBERON:0005743!1.57e-36!73;UBERON:0000073!1.68e-36!75;UBERON:0001016!1.68e-36!75;UBERON:0002346!3.79e-34!71;UBERON:0003075!3.79e-34!71;UBERON:0007284!3.79e-34!71;UBERON:0000033!1.88e-30!63;UBERON:0003056!6.35e-26!49;UBERON:0001049!9.40e-26!52;UBERON:0005068!9.40e-26!52;UBERON:0006241!9.40e-26!52;UBERON:0007135!9.40e-26!52;UBERON:0000955!3.71e-25!50;UBERON:0006238!3.71e-25!50;UBERON:0002616!2.46e-24!49;UBERON:0003080!2.48e-20!40;UBERON:0002780!7.16e-20!39;UBERON:0001890!7.16e-20!39;UBERON:0006240!7.16e-20!39;UBERON:0002020!1.83e-18!34;UBERON:0007811!2.21e-16!86;UBERON:0002791!5.53e-16!29;UBERON:0003528!5.53e-16!29;UBERON:0001893!5.53e-16!29;UBERON:0000153!2.09e-13!94;UBERON:0000956!4.79e-12!21;UBERON:0001869!4.79e-12!21;UBERON:0000203!4.79e-12!21;UBERON:0002619!2.79e-09!17;UBERON:0002021!1.53e-07!10;UBERON:0000411!1.53e-07!10;UBERON:0001950!1.53e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.12e-39,73;UBERON:0001016,3.18e-38,75;UBERON:0004121,1.72e-37,95;UBERON:0000924,1.72e-37,95;UBERON:0006601,1.72e-37,95;UBERON:0002346,3.58e-37,64;UBERON:0003075,3.58e-37,64;UBERON:0007284,3.58e-37,64;UBERON:0010371,1.52e-31,73;UBERON:0000073,9.70e-30,54;UBERON:0003056,3.13e-29,49;UBERON:0001049,3.19e-28,52;UBERON:0005068,3.19e-28,52;UBERON:0006241,3.19e-28,52;UBERON:0007135,3.19e-28,52;UBERON:0000955,1.31e-25,47;UBERON:0006238,1.31e-25,47;UBERON:0002616,1.10e-24,46;UBERON:0010314,1.23e-24,92;UBERON:0003080,8.65e-23,40;UBERON:0002780,2.94e-22,39;UBERON:0001890,2.94e-22,39;UBERON:0006240,2.94e-22,39;UBERON:0002020,1.27e-20,34;UBERON:0003528,9.24e-18,29;UBERON:0002791,9.24e-18,29;UBERON:0001893,9.24e-18,29;UBERON:0000956,3.21e-13,21;UBERON:0001869,3.21e-13,21;UBERON:0000203,3.21e-13,21;UBERON:0002619,4.71e-10,17;UBERON:0002021,1.83e-08,10;UBERON:0000411,1.83e-08,10;UBERON:0001950,1.83e-08,10;UBERON:0000970,4.28e-07,9;UBERON:0000019,4.28e-07,9;UBERON:0000047,4.28e-07,9;UBERON:0010312,4.28e-07,9;UBERON:0004088,4.28e-07,9;UBERON:0002104,4.28e-07,9;UBERON:0001456,4.28e-07,9;UBERON:0003072,4.28e-07,9;UBERON:0004128,4.28e-07,9;UBERON:0003071,4.28e-07,9;UBERON:0002410,9.79e-07,9 | |||
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|short_description=p1@Srrm4 | |||
}} |
Revision as of 06:09, 14 September 2013
Short description: | p1@Srrm4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Srrm4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1137 |
Association with transcript: | 0bp_to_ENSMUST00000076124, NM_026886, uc008zfc.1, uc008zfd.1_5end |
EntrezGene: | Srrm4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.22e-22 | 33 |
neuronal stem cell | 2.22e-22 | 33 |
neuroblast | 2.22e-22 | 33 |
electrically signaling cell | 2.22e-22 | 33 |
ectodermal cell | 4.86e-17 | 44 |
neurectodermal cell | 4.86e-17 | 44 |
neural cell | 6.96e-17 | 43 |
electrically responsive cell | 1.25e-16 | 39 |
electrically active cell | 1.25e-16 | 39 |
CNS neuron (sensu Vertebrata) | 2.72e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.72e-16 | 23 |
autonomic neuron | 9.79e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.