FFCP PHASE1:Mm9::chr13:109239930..109239942,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=238871|HGNC=|MCL_coexpression_id=2|UniProt=|association_with_transcript=-199bp_to_ENSMUST00000133929_5end|description=CAGE_peak_50_at_Pde4d_5end|id=chr13:109239930..109239942,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002021!4.22e-20!10;UBERON:0000411!4.22e-20!10;UBERON:0001950!4.22e-20!10;UBERON:0002619!9.34e-11!17;UBERON:0000956!4.83e-10!21;UBERON:0001869!4.83e-10!21;UBERON:0000203!4.83e-10!21;UBERON:0002791!8.38e-08!29;UBERON:0003528!8.38e-08!29;UBERON:0001893!8.38e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0002021,5.90e-59,10;UBERON:0000411,5.90e-59,10;UBERON:0001950,5.90e-59,10;UBERON:0002619,2.75e-34,17;UBERON:0000956,3.31e-33,21;UBERON:0001869,3.31e-33,21;UBERON:0000203,3.31e-33,21;UBERON:0003528,1.02e-23,29;UBERON:0002791,1.02e-23,29;UBERON:0001893,1.02e-23,29;UBERON:0002020,4.77e-20,34;UBERON:0002780,2.59e-17,39;UBERON:0001890,2.59e-17,39;UBERON:0006240,2.59e-17,39;UBERON:0003080,7.55e-17,40;UBERON:0002616,1.77e-14,46;UBERON:0000955,3.83e-14,47;UBERON:0006238,3.83e-14,47;UBERON:0003056,1.64e-13,49;UBERON:0001049,1.18e-12,52;UBERON:0005068,1.18e-12,52;UBERON:0006241,1.18e-12,52;UBERON:0007135,1.18e-12,52;UBERON:0000073,3.91e-12,54;UBERON:0010314,4.84e-11,92;UBERON:0002346,5.07e-10,64;UBERON:0003075,5.07e-10,64;UBERON:0007284,5.07e-10,64;UBERON:0010371,1.31e-08,73;UBERON:0001017,1.31e-08,73;UBERON:0000025,1.41e-08,114;UBERON:0001016,2.42e-08,75;UBERON:0004111,6.75e-08,122;UBERON:0001851,4.21e-07,1;UBERON:0005889,4.21e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0.457500602818626,0,1.21677024134594,1.79000820131231,0.20778804455956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0,0.268273401399619,0.700592054203017,0,0.164167464079095,0.56748166682099,1.16959989940266,1.09775057645525,2.01309628140558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0.0701358198903186,0,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8244312647074,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.134864346384821,0.330613822901344,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0.483168241652012,0.576060012515731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,4.60325236507177,2.86447756719698,4.46818274093588,1.37016503954128,3.0215755895588,4.05013500139084,2.70192721934532,4.07828168085784,3.10656187051092,0,0,0,0,0,0,0,0,0,0,0,0,0.187283014939765,0,0,0,0,0,0,0,0.685738504770831,0,0,0.145346416632329,0,0,0,0,0,0.561142271657738,0,0.197008964751127,0,0.154936841185966,0.192906610981141,0,0,0,0,0,0|short_description=p50@Pde4d}} | ||
|EntrezGene=238871 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt= | |||
|association_with_transcript=-199bp_to_ENSMUST00000133929_5end | |||
|description=CAGE_peak_50_at_Pde4d_5end | |||
|id=chr13:109239930..109239942,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002021!4.22e-20!10;UBERON:0000411!4.22e-20!10;UBERON:0001950!4.22e-20!10;UBERON:0002619!9.34e-11!17;UBERON:0000956!4.83e-10!21;UBERON:0001869!4.83e-10!21;UBERON:0000203!4.83e-10!21;UBERON:0002791!8.38e-08!29;UBERON:0003528!8.38e-08!29;UBERON:0001893!8.38e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,5.90e-59,10;UBERON:0000411,5.90e-59,10;UBERON:0001950,5.90e-59,10;UBERON:0002619,2.75e-34,17;UBERON:0000956,3.31e-33,21;UBERON:0001869,3.31e-33,21;UBERON:0000203,3.31e-33,21;UBERON:0003528,1.02e-23,29;UBERON:0002791,1.02e-23,29;UBERON:0001893,1.02e-23,29;UBERON:0002020,4.77e-20,34;UBERON:0002780,2.59e-17,39;UBERON:0001890,2.59e-17,39;UBERON:0006240,2.59e-17,39;UBERON:0003080,7.55e-17,40;UBERON:0002616,1.77e-14,46;UBERON:0000955,3.83e-14,47;UBERON:0006238,3.83e-14,47;UBERON:0003056,1.64e-13,49;UBERON:0001049,1.18e-12,52;UBERON:0005068,1.18e-12,52;UBERON:0006241,1.18e-12,52;UBERON:0007135,1.18e-12,52;UBERON:0000073,3.91e-12,54;UBERON:0010314,4.84e-11,92;UBERON:0002346,5.07e-10,64;UBERON:0003075,5.07e-10,64;UBERON:0007284,5.07e-10,64;UBERON:0010371,1.31e-08,73;UBERON:0001017,1.31e-08,73;UBERON:0000025,1.41e-08,114;UBERON:0001016,2.42e-08,75;UBERON:0004111,6.75e-08,122;UBERON:0001851,4.21e-07,1;UBERON:0005889,4.21e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0.457500602818626,0,1.21677024134594,1.79000820131231,0.20778804455956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0,0.268273401399619,0.700592054203017,0,0.164167464079095,0.56748166682099,1.16959989940266,1.09775057645525,2.01309628140558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0.0701358198903186,0,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8244312647074,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.134864346384821,0.330613822901344,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0.483168241652012,0.576060012515731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,4.60325236507177,2.86447756719698,4.46818274093588,1.37016503954128,3.0215755895588,4.05013500139084,2.70192721934532,4.07828168085784,3.10656187051092,0,0,0,0,0,0,0,0,0,0,0,0,0.187283014939765,0,0,0,0,0,0,0,0.685738504770831,0,0,0.145346416632329,0,0,0,0,0,0.561142271657738,0,0.197008964751127,0,0.154936841185966,0.192906610981141,0,0,0,0,0,0 | |||
|short_description=p50@Pde4d | |||
}} |
Revision as of 23:49, 12 September 2013
Short description: | p50@Pde4d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_50_at_Pde4d_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -199bp_to_ENSMUST00000133929_5end |
EntrezGene: | Pde4d |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 5.90e-59 | 10 |
visual cortex | 5.90e-59 | 10 |
neocortex | 5.90e-59 | 10 |
regional part of cerebral cortex | 2.75e-34 | 17 |
cerebral cortex | 3.31e-33 | 21 |
cerebral hemisphere | 3.31e-33 | 21 |
pallium | 3.31e-33 | 21 |
brain grey matter | 1.02e-23 | 29 |
regional part of telencephalon | 1.02e-23 | 29 |
telencephalon | 1.02e-23 | 29 |
gray matter | 4.77e-20 | 34 |
regional part of forebrain | 2.59e-17 | 39 |
forebrain | 2.59e-17 | 39 |
future forebrain | 2.59e-17 | 39 |
anterior neural tube | 7.55e-17 | 40 |
regional part of brain | 1.77e-14 | 46 |
brain | 3.83e-14 | 47 |
future brain | 3.83e-14 | 47 |
pre-chordal neural plate | 1.64e-13 | 49 |
neural tube | 1.18e-12 | 52 |
neural rod | 1.18e-12 | 52 |
future spinal cord | 1.18e-12 | 52 |
neural keel | 1.18e-12 | 52 |
regional part of nervous system | 3.91e-12 | 54 |
structure with developmental contribution from neural crest | 4.84e-11 | 92 |
neurectoderm | 5.07e-10 | 64 |
neural plate | 5.07e-10 | 64 |
presumptive neural plate | 5.07e-10 | 64 |
ecto-epithelium | 1.31e-08 | 73 |
central nervous system | 1.31e-08 | 73 |
tube | 1.41e-08 | 114 |
nervous system | 2.42e-08 | 75 |
anatomical conduit | 6.75e-08 | 122 |
cortex | 4.21e-07 | 1 |
zygote cortex | 4.21e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.