FFCP PHASE1:Mm9::chr9:89804372..89804444,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19417|HGNC=|MCL_coexpression_id=20|UniProt=Q9QZR7,P27671,B2RS27|association_with_transcript=-168bp_to_ENSMUST00000034909,ENSMUST00000034912,NM_001039655,NM_011245,uc009qzr.1,uc009qzs.1,uc009qzt.1_5end|description=CAGE_peak_2_at_Rasgrf1_5end|id=chr9:89804372..89804444,+|ontology_enrichment_celltype=CL:0000117!1.42e-12!23;CL:0000337!1.42e-12!23;CL:0000540!1.09e-08!33;CL:0000047!1.09e-08!33;CL:0000031!1.09e-08!33;CL:0000404!1.09e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,5.59e-10,23;CL:0000337,5.59e-10,23;CL:0002610,1.08e-08,3;CL:0002614,6.97e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.68e-24!52;UBERON:0005068!1.68e-24!52;UBERON:0006241!1.68e-24!52;UBERON:0007135!1.68e-24!52;UBERON:0000955!2.34e-23!50;UBERON:0006238!2.34e-23!50;UBERON:0002020!1.80e-22!34;UBERON:0002616!2.37e-22!49;UBERON:0000033!4.63e-22!63;UBERON:0001017!6.42e-22!73;UBERON:0005743!6.42e-22!73;UBERON:0000073!7.30e-22!75;UBERON:0001016!7.30e-22!75;UBERON:0002346!3.92e-20!71;UBERON:0003075!3.92e-20!71;UBERON:0007284!3.92e-20!71;UBERON:0002791!4.56e-18!29;UBERON:0003528!4.56e-18!29;UBERON:0001893!4.56e-18!29;UBERON:0004121!2.00e-17!102;UBERON:0000924!2.00e-17!102;UBERON:0006601!2.00e-17!102;UBERON:0003080!1.24e-16!40;UBERON:0003056!1.02e-15!49;UBERON:0002780!1.33e-15!39;UBERON:0001890!1.33e-15!39;UBERON:0006240!1.33e-15!39;UBERON:0007811!2.36e-12!86;UBERON:0000956!3.49e-11!21;UBERON:0001869!3.49e-11!21;UBERON:0000203!3.49e-11!21;UBERON:0002021!6.04e-11!10;UBERON:0000411!6.04e-11!10;UBERON:0001950!6.04e-11!10;UBERON:0002619!2.83e-10!17;UBERON:0000153!3.55e-10!94;UBERON:0004111!5.40e-09!122;UBERON:0003076!1.25e-08!12;UBERON:0003057!1.25e-08!12;UBERON:0002420!1.88e-08!8;UBERON:0007245!1.88e-08!8;UBERON:0010009!1.88e-08!8;UBERON:0010011!1.88e-08!8;UBERON:0000454!1.88e-08!8;UBERON:0002298!4.53e-08!6;UBERON:0000025!8.52e-08!114;UBERON:0002240!8.32e-07!6;UBERON:0005174!8.32e-07!6;UBERON:0001137!8.32e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.08e-40,54;UBERON:0001049,2.04e-36,52;UBERON:0005068,2.04e-36,52;UBERON:0006241,2.04e-36,52;UBERON:0007135,2.04e-36,52;UBERON:0001017,1.22e-32,73;UBERON:0001016,1.44e-31,75;UBERON:0002346,2.74e-30,64;UBERON:0003075,2.74e-30,64;UBERON:0007284,2.74e-30,64;UBERON:0000955,2.98e-28,47;UBERON:0006238,2.98e-28,47;UBERON:0002020,6.83e-27,34;UBERON:0002616,1.70e-26,46;UBERON:0010371,1.13e-25,73;UBERON:0004121,6.58e-25,95;UBERON:0000924,6.58e-25,95;UBERON:0006601,6.58e-25,95;UBERON:0003080,5.60e-21,40;UBERON:0002021,8.60e-21,10;UBERON:0000411,8.60e-21,10;UBERON:0001950,8.60e-21,10;UBERON:0010314,2.67e-20,92;UBERON:0002780,3.44e-19,39;UBERON:0001890,3.44e-19,39;UBERON:0006240,3.44e-19,39;UBERON:0003528,4.61e-19,29;UBERON:0002791,4.61e-19,29;UBERON:0001893,4.61e-19,29;UBERON:0003056,7.16e-18,49;UBERON:0003076,4.61e-17,12;UBERON:0003057,4.61e-17,12;UBERON:0002619,4.36e-14,17;UBERON:0000025,7.82e-14,114;UBERON:0000956,3.14e-13,21;UBERON:0001869,3.14e-13,21;UBERON:0000203,3.14e-13,21;UBERON:0004111,1.87e-12,122;UBERON:0002240,2.53e-12,6;UBERON:0005174,2.53e-12,6;UBERON:0001137,2.53e-12,6;UBERON:0002950,2.62e-10,4;UBERON:0001891,2.62e-10,4;UBERON:0009616,2.62e-10,4;UBERON:0010286,2.62e-10,4;UBERON:0001948,4.32e-10,5;UBERON:0002315,4.32e-10,5;UBERON:0004684,1.08e-08,3;UBERON:0002275,1.08e-08,3;UBERON:0002038,6.97e-08,3;UBERON:0009663,6.97e-08,3;UBERON:0009661,6.97e-08,3;UBERON:0000125,6.97e-08,3;UBERON:0002308,6.97e-08,3;UBERON:0011216,1.66e-07,194;UBERON:0000483,2.86e-07,174;UBERON:0007023,3.78e-07,51;UBERON:0000119,4.18e-07,176;UBERON:0002420,4.57e-07,8;UBERON:0007245,4.57e-07,8;UBERON:0010009,4.57e-07,8;UBERON:0010011,4.57e-07,8;UBERON:0000454,4.57e-07,8;UBERON:0004733,9.74e-07,6;UBERON:0004732,9.74e-07,6;UBERON:0002028,9.74e-07,6;UBERON:0007277,9.74e-07,6|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29616883407888,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633831403506179,0,0,0,0,0,0,0,0,0.135005938331691,0.210324961351382,3.99911378165325,3.75476519617743,0.244981598429908,0.191690942036473,0,25.3266526298594,26.1759043074635,23.8090126547177,0.527545150920775,0.548925861614458,0.52091337055676,18.7052609330925,10.1297269805702,15.5854212732346,4.12480019663135,3.13217697758026,1.1183966749518,0,0.151143120213571,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,1.48442139064825,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,11.4184510834503,10.4723353406728,0,0,0,0,34.0024751448948,15.0975198930147,1.00523481690292,11.8200537730748,15.8543583544805,26.3890816590641,18.0087802005211,0,0.248813941220186,1.0108910337347,0.210441855886474,0,0,0,0,0.0680364991513279,0,0.187403449119458,1.55222022443409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0,19.5569652164638,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0.234690248288502,0.167506257441816,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,22.4770825982909,22.8562788854796,0,0,0,0,0,0,0,0,0,0.292255857911312,0,12.2102100240287,0.141940085208269,0,0,0,0,0.242780636154981,0,0,0,0,0.258428293168221,0,0,0,0,0,4.08527526904546,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0,0,0,20.9530591271876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258319646955462,0.168956125490778,0,0,0,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0,0.501572104035363,6.21227026878773,5.52390283808612,5.72895513439397,5.32744865265431,10.9613203163303,9.06472676867641,9.45031500324528,11.2580300806055,11.7817026335893,13.4617681055473,0,0,0,0,0,0.919217542250071,0.666740183404846,0.412070114477788,0,0.505394423527595,0,0,0.280924522409647,0.256100609619477,0.287177344778066,0.476293691283074,0,0.38581844092741,0.824171801606613,0.147198920134397,0.342869252385415,0.177475806159338,0,0,0.188218760830661,0.423073039458382,0,0.263069711437843,0.135804113845862,0.561142271657738,0,0.0985044823755635,0.409231043169689,0,0,0.499621155875892,0.233931608445408,0,0,0,0|short_description=p2@Rasgrf1}} | ||
|EntrezGene=19417 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=Q9QZR7,P27671,B2RS27 | |||
|association_with_transcript=-168bp_to_ENSMUST00000034909,ENSMUST00000034912,NM_001039655,NM_011245,uc009qzr.1,uc009qzs.1,uc009qzt.1_5end | |||
|description=CAGE_peak_2_at_Rasgrf1_5end | |||
|id=chr9:89804372..89804444,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.42e-12!23;CL:0000337!1.42e-12!23;CL:0000540!1.09e-08!33;CL:0000047!1.09e-08!33;CL:0000031!1.09e-08!33;CL:0000404!1.09e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.59e-10,23;CL:0000337,5.59e-10,23;CL:0002610,1.08e-08,3;CL:0002614,6.97e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.68e-24!52;UBERON:0005068!1.68e-24!52;UBERON:0006241!1.68e-24!52;UBERON:0007135!1.68e-24!52;UBERON:0000955!2.34e-23!50;UBERON:0006238!2.34e-23!50;UBERON:0002020!1.80e-22!34;UBERON:0002616!2.37e-22!49;UBERON:0000033!4.63e-22!63;UBERON:0001017!6.42e-22!73;UBERON:0005743!6.42e-22!73;UBERON:0000073!7.30e-22!75;UBERON:0001016!7.30e-22!75;UBERON:0002346!3.92e-20!71;UBERON:0003075!3.92e-20!71;UBERON:0007284!3.92e-20!71;UBERON:0002791!4.56e-18!29;UBERON:0003528!4.56e-18!29;UBERON:0001893!4.56e-18!29;UBERON:0004121!2.00e-17!102;UBERON:0000924!2.00e-17!102;UBERON:0006601!2.00e-17!102;UBERON:0003080!1.24e-16!40;UBERON:0003056!1.02e-15!49;UBERON:0002780!1.33e-15!39;UBERON:0001890!1.33e-15!39;UBERON:0006240!1.33e-15!39;UBERON:0007811!2.36e-12!86;UBERON:0000956!3.49e-11!21;UBERON:0001869!3.49e-11!21;UBERON:0000203!3.49e-11!21;UBERON:0002021!6.04e-11!10;UBERON:0000411!6.04e-11!10;UBERON:0001950!6.04e-11!10;UBERON:0002619!2.83e-10!17;UBERON:0000153!3.55e-10!94;UBERON:0004111!5.40e-09!122;UBERON:0003076!1.25e-08!12;UBERON:0003057!1.25e-08!12;UBERON:0002420!1.88e-08!8;UBERON:0007245!1.88e-08!8;UBERON:0010009!1.88e-08!8;UBERON:0010011!1.88e-08!8;UBERON:0000454!1.88e-08!8;UBERON:0002298!4.53e-08!6;UBERON:0000025!8.52e-08!114;UBERON:0002240!8.32e-07!6;UBERON:0005174!8.32e-07!6;UBERON:0001137!8.32e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.08e-40,54;UBERON:0001049,2.04e-36,52;UBERON:0005068,2.04e-36,52;UBERON:0006241,2.04e-36,52;UBERON:0007135,2.04e-36,52;UBERON:0001017,1.22e-32,73;UBERON:0001016,1.44e-31,75;UBERON:0002346,2.74e-30,64;UBERON:0003075,2.74e-30,64;UBERON:0007284,2.74e-30,64;UBERON:0000955,2.98e-28,47;UBERON:0006238,2.98e-28,47;UBERON:0002020,6.83e-27,34;UBERON:0002616,1.70e-26,46;UBERON:0010371,1.13e-25,73;UBERON:0004121,6.58e-25,95;UBERON:0000924,6.58e-25,95;UBERON:0006601,6.58e-25,95;UBERON:0003080,5.60e-21,40;UBERON:0002021,8.60e-21,10;UBERON:0000411,8.60e-21,10;UBERON:0001950,8.60e-21,10;UBERON:0010314,2.67e-20,92;UBERON:0002780,3.44e-19,39;UBERON:0001890,3.44e-19,39;UBERON:0006240,3.44e-19,39;UBERON:0003528,4.61e-19,29;UBERON:0002791,4.61e-19,29;UBERON:0001893,4.61e-19,29;UBERON:0003056,7.16e-18,49;UBERON:0003076,4.61e-17,12;UBERON:0003057,4.61e-17,12;UBERON:0002619,4.36e-14,17;UBERON:0000025,7.82e-14,114;UBERON:0000956,3.14e-13,21;UBERON:0001869,3.14e-13,21;UBERON:0000203,3.14e-13,21;UBERON:0004111,1.87e-12,122;UBERON:0002240,2.53e-12,6;UBERON:0005174,2.53e-12,6;UBERON:0001137,2.53e-12,6;UBERON:0002950,2.62e-10,4;UBERON:0001891,2.62e-10,4;UBERON:0009616,2.62e-10,4;UBERON:0010286,2.62e-10,4;UBERON:0001948,4.32e-10,5;UBERON:0002315,4.32e-10,5;UBERON:0004684,1.08e-08,3;UBERON:0002275,1.08e-08,3;UBERON:0002038,6.97e-08,3;UBERON:0009663,6.97e-08,3;UBERON:0009661,6.97e-08,3;UBERON:0000125,6.97e-08,3;UBERON:0002308,6.97e-08,3;UBERON:0011216,1.66e-07,194;UBERON:0000483,2.86e-07,174;UBERON:0007023,3.78e-07,51;UBERON:0000119,4.18e-07,176;UBERON:0002420,4.57e-07,8;UBERON:0007245,4.57e-07,8;UBERON:0010009,4.57e-07,8;UBERON:0010011,4.57e-07,8;UBERON:0000454,4.57e-07,8;UBERON:0004733,9.74e-07,6;UBERON:0004732,9.74e-07,6;UBERON:0002028,9.74e-07,6;UBERON:0007277,9.74e-07,6 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29616883407888,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633831403506179,0,0,0,0,0,0,0,0,0.135005938331691,0.210324961351382,3.99911378165325,3.75476519617743,0.244981598429908,0.191690942036473,0,25.3266526298594,26.1759043074635,23.8090126547177,0.527545150920775,0.548925861614458,0.52091337055676,18.7052609330925,10.1297269805702,15.5854212732346,4.12480019663135,3.13217697758026,1.1183966749518,0,0.151143120213571,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,1.48442139064825,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,11.4184510834503,10.4723353406728,0,0,0,0,34.0024751448948,15.0975198930147,1.00523481690292,11.8200537730748,15.8543583544805,26.3890816590641,18.0087802005211,0,0.248813941220186,1.0108910337347,0.210441855886474,0,0,0,0,0.0680364991513279,0,0.187403449119458,1.55222022443409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0,19.5569652164638,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0.234690248288502,0.167506257441816,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,22.4770825982909,22.8562788854796,0,0,0,0,0,0,0,0,0,0.292255857911312,0,12.2102100240287,0.141940085208269,0,0,0,0,0.242780636154981,0,0,0,0,0.258428293168221,0,0,0,0,0,4.08527526904546,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0,0,0,20.9530591271876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258319646955462,0.168956125490778,0,0,0,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0,0.501572104035363,6.21227026878773,5.52390283808612,5.72895513439397,5.32744865265431,10.9613203163303,9.06472676867641,9.45031500324528,11.2580300806055,11.7817026335893,13.4617681055473,0,0,0,0,0,0.919217542250071,0.666740183404846,0.412070114477788,0,0.505394423527595,0,0,0.280924522409647,0.256100609619477,0.287177344778066,0.476293691283074,0,0.38581844092741,0.824171801606613,0.147198920134397,0.342869252385415,0.177475806159338,0,0,0.188218760830661,0.423073039458382,0,0.263069711437843,0.135804113845862,0.561142271657738,0,0.0985044823755635,0.409231043169689,0,0,0.499621155875892,0.233931608445408,0,0,0,0 | |||
|short_description=p2@Rasgrf1 | |||
}} |
Revision as of 18:57, 14 September 2013
Short description: | p2@Rasgrf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rasgrf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | -168bp_to_ENSMUST00000034909, ENSMUST00000034912, NM_001039655, NM_011245, uc009qzr.1, uc009qzs.1, uc009qzt.1_5end |
EntrezGene: | Rasgrf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.59e-10 | 23 |
neuroblast (sensu Vertebrata) | 5.59e-10 | 23 |
raphe nuclei neuron | 1.08e-08 | 3 |
neuron of the substantia nigra | 6.97e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.