FFCP PHASE1:Mm9::chr4:46615065..46615096,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=107684|HGNC=|UniProt=Q8C0P5|association_with_transcript=0bp_to_ENSMUST00000107756_5end|description=CAGE_peak_2_at_Coro2a_5end|id=chr4:46615065..46615096,-|ontology_enrichment_celltype=CL:0000117!7.44e-07!23;CL:0000337!7.44e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,7.17e-07,23;CL:0000337,7.17e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!7.46e-09!34;UBERON:0000064!6.14e-08!99;UBERON:0001049!1.85e-07!52;UBERON:0005068!1.85e-07!52;UBERON:0006241!1.85e-07!52;UBERON:0007135!1.85e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.67e-09,34;UBERON:0000073,5.46e-09,54;UBERON:0001049,3.43e-08,52;UBERON:0005068,3.43e-08,52;UBERON:0006241,3.43e-08,52;UBERON:0007135,3.43e-08,52;UBERON:0000160,1.84e-07,31;UBERON:0003528,3.57e-07,29;UBERON:0002791,3.57e-07,29;UBERON:0001893,3.57e-07,29;UBERON:0005409,7.72e-07,47|phase1_expression=4.00372117761985,1.74487703819681,2.27499619694768,4.83942738090928,5.50985302940982,2.01455126294268,2.56973904655078,0,0.563154888606667,0.234064526321993,0.68487187290202,0.0797721589953364,2.05440875917447,0.262261207256992,1.33243904726265,1.21485160433896,0.699561878128147,5.8360500591274,6.17014951225825,6.36584477697045,1.02051948181284,10.0283860712894,6.79119451761232,1.59992422793407,1.83527424853736,1.72269589234506,2.58457197695445,1.29282739611533,3.04037471130198,2.52030129759931,1.77384408524244,0,0,0,2.88851619751275,4.15586613396231,3.87921776898501,0.418531630736908,0.7813353445238,1.0470474879476,0.588231488031014,0.683045484958446,0.485510353031154,0,0,0,0,0,0,0,0,0,5.03347818173209,2.90144856804538,0.336093799142464,0,0,0,2.83243045203437,6.34789175126439,7.60597684207415,0,0,1.7997994345628,1.97773272513395,3.5524005747305,0.299600110518405,0.768436610643109,1.8664130215526,1.21505344498522,0.420649922702764,8.56952953211411,7.95126747425809,1.34739879136449,1.53352753629178,0.919218786610021,5.50579404996943,5.2351808614927,6.91229399653096,7.51751840062105,6.58711033937349,7.8137005583514,6.42120897703176,2.8138130501584,3.0559649555362,6.48182888042069,4.9830088279686,4.10078780815661,0,0.68014404096107,0.289864488701678,0,0,0,0,0,0.702222100658759,0,0,0,1.54927761754349,0,0,0,1.08245520505607,1.26679932737549,1.51657333504435,1.02765491747154,3.36619248741323,0.742210695324124,1.21439728736295,1.21786191324856,1.15307748628029,1.20578112442098,1.05829836422134,0.251333182659351,1.48316980640624,0.289198713839823,0.884610551949874,0.647067399789637,1.76673214768315,1.45462575940567,1.86391761218122,2.63502717310392,4.81727425670947,5.8755122697976,13.539109069169,11.9980546198682,8.25956475974921,6.74057877321702,4.57500602818627,6.03140890141749,5.04090528557602,7.41574826257959,7.48036960414416,5.353961681236,2.44414473240759,3.35898820647251,5.30717792710717,0.420883711772948,0.780722657776222,1.14951052216736,1.26043490863744,1.05493372485001,1.2246569847239,0.768682321709099,1.03071897015702,1.55222022443409,0.431135985865684,0.567318240503458,0.879755620819744,0.219195732427575,0.278047249225598,0.348252166522167,0.411564272815887,0.199034266818493,4.91549231119264,4.63226232806487,5.39910648851626,0.207125772535502,0.234526059981096,0.36012412292203,0,0,0,0,0,0,0,0,0,0.438599962275997,0,0.134206418760372,3.57492912559016,6.07137213037778,0.991256348951394,7.1401652999157,0.426576501070468,1.62565670302307,4.25262622362908,5.44545516483025,4.89231696458715,3.99473814836374,5.21981967698963,3.62337700392824,2.76468729680296,5.76973768919337,3.50935356814416,4.49409704327111,3.6743468478698,2.19055400579804,1.51734320762465,1.02823661348756,0,0.610953983535943,0.775809948670503,1.05203729835478,0.69560190836683,0.295220295959204,0,0.370191491765402,0.296452627087149,1.16791574001266,1.76903095601883,1.57403478669398,1.01430060694251,1.20588579876208,0.50925170356284,0.287696137450811,1.13494658742525,0.274561413188081,1.43768206527355,1.48856379067401,0.936113019343682,0.505157755894224,0.179397413521912,0,2.03228509183265,0.757965647081939,0.651859905768103,0.339490171550376,0.234690248288502,1.00503754465089,0.238043640886014,0.195133647857799,0.157635144106191,1.55025282754142,0.478364305972461,0.491589944147214,1.38147985492716,1.88043776155965,0,1.63171705145613,1.47529281905711,4.69092468718045,8.50918126935297,5.97779601620236,0,0.252470927204373,0.315508219416257,0.390438744296638,0.861693590931196,0.955875191810208,1.11399337041197,0.849229592366497,0,0.292255857911312,0.790575555893047,0.963963949265421,1.27746076687442,0.890328018336276,1.46598263418218,2.63952196756057,0,1.21390318077491,0.302323556964751,0.188605079755898,0.885905678642318,0.307435147943927,1.55056975900933,0.363533729477506,0.712994756769443,0.632073515871632,0,0,0,0.900305470156551,0.129358683782755,0.643011105094777,0,1.24858172321449,0.987294123612726,1.8267896946876,0.938686832254841,0.21183207086382,2.20528398054962,0.16488625294148,0.161464426695906,0.422190474497091,0.2387446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| ||
|EntrezGene=107684 | |||
|HGNC= | |||
|UniProt=Q8C0P5 | |||
|association_with_transcript=0bp_to_ENSMUST00000107756_5end | |||
|description=CAGE_peak_2_at_Coro2a_5end | |||
|id=chr4:46615065..46615096,- | |||
|ontology_enrichment_celltype=CL:0000117!7.44e-07!23;CL:0000337!7.44e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.17e-07,23;CL:0000337,7.17e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!7.46e-09!34;UBERON:0000064!6.14e-08!99;UBERON:0001049!1.85e-07!52;UBERON:0005068!1.85e-07!52;UBERON:0006241!1.85e-07!52;UBERON:0007135!1.85e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.67e-09,34;UBERON:0000073,5.46e-09,54;UBERON:0001049,3.43e-08,52;UBERON:0005068,3.43e-08,52;UBERON:0006241,3.43e-08,52;UBERON:0007135,3.43e-08,52;UBERON:0000160,1.84e-07,31;UBERON:0003528,3.57e-07,29;UBERON:0002791,3.57e-07,29;UBERON:0001893,3.57e-07,29;UBERON:0005409,7.72e-07,47 | |||
|phase1_expression=4.00372117761985,1.74487703819681,2.27499619694768,4.83942738090928,5.50985302940982,2.01455126294268,2.56973904655078,0,0.563154888606667,0.234064526321993,0.68487187290202,0.0797721589953364,2.05440875917447,0.262261207256992,1.33243904726265,1.21485160433896,0.699561878128147,5.8360500591274,6.17014951225825,6.36584477697045,1.02051948181284,10.0283860712894,6.79119451761232,1.59992422793407,1.83527424853736,1.72269589234506,2.58457197695445,1.29282739611533,3.04037471130198,2.52030129759931,1.77384408524244,0,0,0,2.88851619751275,4.15586613396231,3.87921776898501,0.418531630736908,0.7813353445238,1.0470474879476,0.588231488031014,0.683045484958446,0.485510353031154,0,0,0,0,0,0,0,0,0,5.03347818173209,2.90144856804538,0.336093799142464,0,0,0,2.83243045203437,6.34789175126439,7.60597684207415,0,0,1.7997994345628,1.97773272513395,3.5524005747305,0.299600110518405,0.768436610643109,1.8664130215526,1.21505344498522,0.420649922702764,8.56952953211411,7.95126747425809,1.34739879136449,1.53352753629178,0.919218786610021,5.50579404996943,5.2351808614927,6.91229399653096,7.51751840062105,6.58711033937349,7.8137005583514,6.42120897703176,2.8138130501584,3.0559649555362,6.48182888042069,4.9830088279686,4.10078780815661,0,0.68014404096107,0.289864488701678,0,0,0,0,0,0.702222100658759,0,0,0,1.54927761754349,0,0,0,1.08245520505607,1.26679932737549,1.51657333504435,1.02765491747154,3.36619248741323,0.742210695324124,1.21439728736295,1.21786191324856,1.15307748628029,1.20578112442098,1.05829836422134,0.251333182659351,1.48316980640624,0.289198713839823,0.884610551949874,0.647067399789637,1.76673214768315,1.45462575940567,1.86391761218122,2.63502717310392,4.81727425670947,5.8755122697976,13.539109069169,11.9980546198682,8.25956475974921,6.74057877321702,4.57500602818627,6.03140890141749,5.04090528557602,7.41574826257959,7.48036960414416,5.353961681236,2.44414473240759,3.35898820647251,5.30717792710717,0.420883711772948,0.780722657776222,1.14951052216736,1.26043490863744,1.05493372485001,1.2246569847239,0.768682321709099,1.03071897015702,1.55222022443409,0.431135985865684,0.567318240503458,0.879755620819744,0.219195732427575,0.278047249225598,0.348252166522167,0.411564272815887,0.199034266818493,4.91549231119264,4.63226232806487,5.39910648851626,0.207125772535502,0.234526059981096,0.36012412292203,0,0,0,0,0,0,0,0,0,0.438599962275997,0,0.134206418760372,3.57492912559016,6.07137213037778,0.991256348951394,7.1401652999157,0.426576501070468,1.62565670302307,4.25262622362908,5.44545516483025,4.89231696458715,3.99473814836374,5.21981967698963,3.62337700392824,2.76468729680296,5.76973768919337,3.50935356814416,4.49409704327111,3.6743468478698,2.19055400579804,1.51734320762465,1.02823661348756,0,0.610953983535943,0.775809948670503,1.05203729835478,0.69560190836683,0.295220295959204,0,0.370191491765402,0.296452627087149,1.16791574001266,1.76903095601883,1.57403478669398,1.01430060694251,1.20588579876208,0.50925170356284,0.287696137450811,1.13494658742525,0.274561413188081,1.43768206527355,1.48856379067401,0.936113019343682,0.505157755894224,0.179397413521912,0,2.03228509183265,0.757965647081939,0.651859905768103,0.339490171550376,0.234690248288502,1.00503754465089,0.238043640886014,0.195133647857799,0.157635144106191,1.55025282754142,0.478364305972461,0.491589944147214,1.38147985492716,1.88043776155965,0,1.63171705145613,1.47529281905711,4.69092468718045,8.50918126935297,5.97779601620236,0,0.252470927204373,0.315508219416257,0.390438744296638,0.861693590931196,0.955875191810208,1.11399337041197,0.849229592366497,0,0.292255857911312,0.790575555893047,0.963963949265421,1.27746076687442,0.890328018336276,1.46598263418218,2.63952196756057,0,1.21390318077491,0.302323556964751,0.188605079755898,0.885905678642318,0.307435147943927,1.55056975900933,0.363533729477506,0.712994756769443,0.632073515871632,0,0,0,0.900305470156551,0.129358683782755,0.643011105094777,0,1.24858172321449,0.987294123612726,1.8267896946876,0.938686832254841,0.21183207086382,2.20528398054962,0.16488625294148,0.161464426695906,0.422190474497091,0.238744688006273,0.492422699235184,3.49777003955821,6.11903496634682,2.05045056957423,0.619160603889667,1.48155621895769,2.26042148405629,2.59719032669948,2.28778173206523,12.7483822495391,14.2750481370131,14.7873971970733,0.954670618015114,1.73984796469624,1.82987520414164,1.72808545314882,1.88179466413022,0.87345025498471,0.674321731924103,2.31429676030941,2.09404753587224,4.14767914533737,2.4853572523477,0.56369293868419,0.299033092087958,0.330916980914195,0.777804753376191,0.774958940866387,1.35164900392623,1.40828686374905,1.43224823328345,4.61381115473128,1.69108884578204,0.864090018773596,1.89606672376907,9.12263468805739,12.2226039026144,11.9527157139571,11.0996551313838,7.15252877212554,5.52899067791857,3.83992770653901,3.12995994839258,3.27689268616499,2.52065462842101,1.8516997340553,1.15454209968395,1.75315353272353,1.13365191807606,2.44184548711471,1.34570784914214,0.503653849092235,0.38637918806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| |||
|short_description=p2@Coro2a | |||
}} | |||
Revision as of 05:07, 14 September 2013
| Short description: | p2@Coro2a |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Coro2a_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENSMUST00000107756_5end |
| EntrezGene: | Coro2a |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 7.17e-07 | 23 |
| neuroblast (sensu Vertebrata) | 7.17e-07 | 23 |
| Ontology term | p-value | n |
|---|---|---|
| gray matter | 1.67e-09 | 34 |
| regional part of nervous system | 5.46e-09 | 54 |
| neural tube | 3.43e-08 | 52 |
| neural rod | 3.43e-08 | 52 |
| future spinal cord | 3.43e-08 | 52 |
| neural keel | 3.43e-08 | 52 |
| intestine | 1.84e-07 | 31 |
| brain grey matter | 3.57e-07 | 29 |
| regional part of telencephalon | 3.57e-07 | 29 |
| telencephalon | 3.57e-07 | 29 |
| gastrointestinal system | 7.72e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
