FFCP PHASE1:Mm9::chr6:137200798..137200815,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19277|HGNC=|MCL_coexpression_id=3418|UniProt=E9Q612,E9Q4I1|association_with_transcript=-4bp_to_ENSMUST00000077115,ENSMUST00000167679,NM_001164401,NM_011216,uc009emu.2,uc009emv.2,uc009emw.2_5end|description=CAGE_peak_4_at_Ptpro_5end|id=chr6:137200798..137200815,+|ontology_enrichment_celltype=CL:0000117!2.93e-19!23;CL:0000337!2.93e-19!23;CL:0000540!2.09e-17!33;CL:0000047!2.09e-17!33;CL:0000031!2.09e-17!33;CL:0000404!2.09e-17!33;CL:0000221!1.26e-13!44;CL:0000133!1.26e-13!44;CL:0002319!1.62e-13!43;CL:0000393!1.25e-12!39;CL:0000211!1.25e-12!39;CL:0000055!1.05e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,7.91e-28,23;CL:0000337,7.91e-28,23;CL:0000540,3.96e-18,33;CL:0000047,3.96e-18,33;CL:0000031,3.96e-18,33;CL:0000404,3.96e-18,33;CL:0000393,4.83e-14,39;CL:0000211,4.83e-14,39;CL:0002319,5.56e-12,43;CL:0000221,1.58e-11,44;CL:0000133,1.58e-11,44;CL:0002609,7.10e-09,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.86e-27!75;UBERON:0001016!1.86e-27!75;UBERON:0001017!1.99e-27!73;UBERON:0005743!1.99e-27!73;UBERON:0004121!1.07e-23!102;UBERON:0000924!1.07e-23!102;UBERON:0006601!1.07e-23!102;UBERON:0001049!6.21e-23!52;UBERON:0005068!6.21e-23!52;UBERON:0006241!6.21e-23!52;UBERON:0007135!6.21e-23!52;UBERON:0000955!5.17e-22!50;UBERON:0006238!5.17e-22!50;UBERON:0000033!6.70e-22!63;UBERON:0002346!8.55e-22!71;UBERON:0003075!8.55e-22!71;UBERON:0007284!8.55e-22!71;UBERON:0003056!1.52e-21!49;UBERON:0002616!4.01e-21!49;UBERON:0002020!8.48e-21!34;UBERON:0003080!1.29e-20!40;UBERON:0002780!6.40e-20!39;UBERON:0001890!6.40e-20!39;UBERON:0006240!6.40e-20!39;UBERON:0002791!4.17e-17!29;UBERON:0003528!4.17e-17!29;UBERON:0001893!4.17e-17!29;UBERON:0000956!4.29e-11!21;UBERON:0001869!4.29e-11!21;UBERON:0000203!4.29e-11!21;UBERON:0007811!7.39e-11!86;UBERON:0000153!4.12e-10!94;UBERON:0002619!3.38e-08!17;UBERON:0002420!1.95e-07!8;UBERON:0007245!1.95e-07!8;UBERON:0010009!1.95e-07!8;UBERON:0010011!1.95e-07!8;UBERON:0000454!1.95e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.61e-30,54;UBERON:0002020,4.57e-28,34;UBERON:0001049,3.65e-26,52;UBERON:0005068,3.65e-26,52;UBERON:0006241,3.65e-26,52;UBERON:0007135,3.65e-26,52;UBERON:0001017,4.87e-26,73;UBERON:0001016,6.20e-25,75;UBERON:0003080,6.24e-25,40;UBERON:0002780,6.13e-24,39;UBERON:0001890,6.13e-24,39;UBERON:0006240,6.13e-24,39;UBERON:0002346,7.96e-24,64;UBERON:0003075,7.96e-24,64;UBERON:0007284,7.96e-24,64;UBERON:0000955,5.38e-23,47;UBERON:0006238,5.38e-23,47;UBERON:0003528,1.19e-22,29;UBERON:0002791,1.19e-22,29;UBERON:0001893,1.19e-22,29;UBERON:0003056,1.45e-22,49;UBERON:0002616,8.40e-22,46;UBERON:0004121,1.41e-19,95;UBERON:0000924,1.41e-19,95;UBERON:0006601,1.41e-19,95;UBERON:0010371,3.46e-19,73;UBERON:0000956,6.51e-14,21;UBERON:0001869,6.51e-14,21;UBERON:0000203,6.51e-14,21;UBERON:0010314,1.68e-12,92;UBERON:0002420,2.80e-10,8;UBERON:0007245,2.80e-10,8;UBERON:0010009,2.80e-10,8;UBERON:0010011,2.80e-10,8;UBERON:0000454,2.80e-10,8;UBERON:0002619,8.98e-10,17;UBERON:0000369,3.17e-07,5;UBERON:0002435,3.17e-07,5;UBERON:0000204,3.17e-07,5;UBERON:0010082,3.17e-07,5|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,10.7227724255587,12.6957835025288,11.4089652631112,0,0,0,0,0,0.599200221036809,0,9.12468588314603,9.04539786822327,11.567872874326,3.42781181284564,5.74258206474195,10.779190330916,13.2266750005166,16.5459381589804,3.30347642998166,4.97980618532232,5.22262213071228,11.3422207447967,10.8870295886867,8.33461392890816,2.23346399201105,10.1297269805702,7.63991238884051,3.53554302568401,4.41352210477219,4.84638559145781,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0.346970653532272,0,0.461230994512117,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,3.2953940669061,4.11750542536764,7.413606774659,2.9550134432687,2.55715457330331,3.32460871295296,4.70499662896497,0.712875546952214,0,0,0.631325567659422,0,0.459804208866946,0,0.90422890701429,0.95251098811859,2.17793324484245,1.78033276663485,1.81092359517311,0,0,0.351902248327898,0.219195732427575,0,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,0,0,0.540186184383045,0,0,0,0,0,0,0,0,0,0,0,0,2.3131894342054,4.93942139420565,0,0,0,0,0.257734922644187,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0.456994050438915,6.76246414038483,2.64746726198909,2.13347735884388,2.38461787627083,2.27651533647326,1.18088118383682,2.04098346193787,0.863780147452604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,0.80275294993896,2.46144541843627,0,0,0.94652465824877,0,1.29254038639679,0,0.222798674082394,0.566153061577665,0.404810701674894,0.292255857911312,0.395287777946524,24.7417413644791,0,0.534196811001766,0.162886959353576,0,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,5.10659408630682,0,0.388076051348264,0.214337035031592,2.12808280370728,0.713475270408282,1.31639216481697,1.522324745573,0,0,0,0,0.161464426695906,0.482503399425247,0.238744688006273,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0,0,0,0,0,0,0,0.299033092087958,0.496375471371293,2.13896307178452,1.03327858782185,0.675824501963113,0.234714477291508,0.13020438484395,0.104859344425711,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,1.12950368523413,3.22227665555024,0.572895513439397,1.54667864109319,1.37016503954128,3.0215755895588,1.35004500046361,3.15224842256954,1.35942722695261,1.03552062350364,0.103787347584177,0.798049746802062,0.682934423016537,1.70174701947806,1.04806581313991,0.367687016900028,1.77797382241292,1.44224540067226,1.92551525755089,1.76888048234658,0.760437899670719,2.45214243801899,1.21733959710847,1.34452820050225,1.43588672389033,0,1.73826488917283,1.35036454324594,0.824171801606613,1.32479028120958,2.40008476669791,1.59728225543404,1.66905332963125,0.872078499793971,1.31753132581463,1.26921911837515,1.46342378298218,0.789209134313529,1.35804113845862,1.12228454331548,1.54225523561426,1.57607171800902,0.409231043169689,0.77468420592983,2.89359916471712,1.74867404556562,2.10538447600868,0.859484216193193,0.765153328275374,0.220591419119515,0.231867835620421|short_description=p4@Ptpro}} | ||
|EntrezGene=19277 | |||
|HGNC= | |||
|MCL_coexpression_id=3418 | |||
|UniProt=E9Q612,E9Q4I1 | |||
|association_with_transcript=-4bp_to_ENSMUST00000077115,ENSMUST00000167679,NM_001164401,NM_011216,uc009emu.2,uc009emv.2,uc009emw.2_5end | |||
|description=CAGE_peak_4_at_Ptpro_5end | |||
|id=chr6:137200798..137200815,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.93e-19!23;CL:0000337!2.93e-19!23;CL:0000540!2.09e-17!33;CL:0000047!2.09e-17!33;CL:0000031!2.09e-17!33;CL:0000404!2.09e-17!33;CL:0000221!1.26e-13!44;CL:0000133!1.26e-13!44;CL:0002319!1.62e-13!43;CL:0000393!1.25e-12!39;CL:0000211!1.25e-12!39;CL:0000055!1.05e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.91e-28,23;CL:0000337,7.91e-28,23;CL:0000540,3.96e-18,33;CL:0000047,3.96e-18,33;CL:0000031,3.96e-18,33;CL:0000404,3.96e-18,33;CL:0000393,4.83e-14,39;CL:0000211,4.83e-14,39;CL:0002319,5.56e-12,43;CL:0000221,1.58e-11,44;CL:0000133,1.58e-11,44;CL:0002609,7.10e-09,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.86e-27!75;UBERON:0001016!1.86e-27!75;UBERON:0001017!1.99e-27!73;UBERON:0005743!1.99e-27!73;UBERON:0004121!1.07e-23!102;UBERON:0000924!1.07e-23!102;UBERON:0006601!1.07e-23!102;UBERON:0001049!6.21e-23!52;UBERON:0005068!6.21e-23!52;UBERON:0006241!6.21e-23!52;UBERON:0007135!6.21e-23!52;UBERON:0000955!5.17e-22!50;UBERON:0006238!5.17e-22!50;UBERON:0000033!6.70e-22!63;UBERON:0002346!8.55e-22!71;UBERON:0003075!8.55e-22!71;UBERON:0007284!8.55e-22!71;UBERON:0003056!1.52e-21!49;UBERON:0002616!4.01e-21!49;UBERON:0002020!8.48e-21!34;UBERON:0003080!1.29e-20!40;UBERON:0002780!6.40e-20!39;UBERON:0001890!6.40e-20!39;UBERON:0006240!6.40e-20!39;UBERON:0002791!4.17e-17!29;UBERON:0003528!4.17e-17!29;UBERON:0001893!4.17e-17!29;UBERON:0000956!4.29e-11!21;UBERON:0001869!4.29e-11!21;UBERON:0000203!4.29e-11!21;UBERON:0007811!7.39e-11!86;UBERON:0000153!4.12e-10!94;UBERON:0002619!3.38e-08!17;UBERON:0002420!1.95e-07!8;UBERON:0007245!1.95e-07!8;UBERON:0010009!1.95e-07!8;UBERON:0010011!1.95e-07!8;UBERON:0000454!1.95e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.61e-30,54;UBERON:0002020,4.57e-28,34;UBERON:0001049,3.65e-26,52;UBERON:0005068,3.65e-26,52;UBERON:0006241,3.65e-26,52;UBERON:0007135,3.65e-26,52;UBERON:0001017,4.87e-26,73;UBERON:0001016,6.20e-25,75;UBERON:0003080,6.24e-25,40;UBERON:0002780,6.13e-24,39;UBERON:0001890,6.13e-24,39;UBERON:0006240,6.13e-24,39;UBERON:0002346,7.96e-24,64;UBERON:0003075,7.96e-24,64;UBERON:0007284,7.96e-24,64;UBERON:0000955,5.38e-23,47;UBERON:0006238,5.38e-23,47;UBERON:0003528,1.19e-22,29;UBERON:0002791,1.19e-22,29;UBERON:0001893,1.19e-22,29;UBERON:0003056,1.45e-22,49;UBERON:0002616,8.40e-22,46;UBERON:0004121,1.41e-19,95;UBERON:0000924,1.41e-19,95;UBERON:0006601,1.41e-19,95;UBERON:0010371,3.46e-19,73;UBERON:0000956,6.51e-14,21;UBERON:0001869,6.51e-14,21;UBERON:0000203,6.51e-14,21;UBERON:0010314,1.68e-12,92;UBERON:0002420,2.80e-10,8;UBERON:0007245,2.80e-10,8;UBERON:0010009,2.80e-10,8;UBERON:0010011,2.80e-10,8;UBERON:0000454,2.80e-10,8;UBERON:0002619,8.98e-10,17;UBERON:0000369,3.17e-07,5;UBERON:0002435,3.17e-07,5;UBERON:0000204,3.17e-07,5;UBERON:0010082,3.17e-07,5 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,10.7227724255587,12.6957835025288,11.4089652631112,0,0,0,0,0,0.599200221036809,0,9.12468588314603,9.04539786822327,11.567872874326,3.42781181284564,5.74258206474195,10.779190330916,13.2266750005166,16.5459381589804,3.30347642998166,4.97980618532232,5.22262213071228,11.3422207447967,10.8870295886867,8.33461392890816,2.23346399201105,10.1297269805702,7.63991238884051,3.53554302568401,4.41352210477219,4.84638559145781,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0.346970653532272,0,0.461230994512117,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,3.2953940669061,4.11750542536764,7.413606774659,2.9550134432687,2.55715457330331,3.32460871295296,4.70499662896497,0.712875546952214,0,0,0.631325567659422,0,0.459804208866946,0,0.90422890701429,0.95251098811859,2.17793324484245,1.78033276663485,1.81092359517311,0,0,0.351902248327898,0.219195732427575,0,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,0,0,0.540186184383045,0,0,0,0,0,0,0,0,0,0,0,0,2.3131894342054,4.93942139420565,0,0,0,0,0.257734922644187,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0.456994050438915,6.76246414038483,2.64746726198909,2.13347735884388,2.38461787627083,2.27651533647326,1.18088118383682,2.04098346193787,0.863780147452604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,0.80275294993896,2.46144541843627,0,0,0.94652465824877,0,1.29254038639679,0,0.222798674082394,0.566153061577665,0.404810701674894,0.292255857911312,0.395287777946524,24.7417413644791,0,0.534196811001766,0.162886959353576,0,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,5.10659408630682,0,0.388076051348264,0.214337035031592,2.12808280370728,0.713475270408282,1.31639216481697,1.522324745573,0,0,0,0,0.161464426695906,0.482503399425247,0.238744688006273,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0,0,0,0,0,0,0,0.299033092087958,0.496375471371293,2.13896307178452,1.03327858782185,0.675824501963113,0.234714477291508,0.13020438484395,0.104859344425711,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,1.12950368523413,3.22227665555024,0.572895513439397,1.54667864109319,1.37016503954128,3.0215755895588,1.35004500046361,3.15224842256954,1.35942722695261,1.03552062350364,0.103787347584177,0.798049746802062,0.682934423016537,1.70174701947806,1.04806581313991,0.367687016900028,1.77797382241292,1.44224540067226,1.92551525755089,1.76888048234658,0.760437899670719,2.45214243801899,1.21733959710847,1.34452820050225,1.43588672389033,0,1.73826488917283,1.35036454324594,0.824171801606613,1.32479028120958,2.40008476669791,1.59728225543404,1.66905332963125,0.872078499793971,1.31753132581463,1.26921911837515,1.46342378298218,0.789209134313529,1.35804113845862,1.12228454331548,1.54225523561426,1.57607171800902,0.409231043169689,0.77468420592983,2.89359916471712,1.74867404556562,2.10538447600868,0.859484216193193,0.765153328275374,0.220591419119515,0.231867835620421 | |||
|short_description=p4@Ptpro | |||
}} |
Revision as of 09:13, 14 September 2013
Short description: | p4@Ptpro |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ptpro_5end |
Coexpression cluster: | MCL_coexpression_mm9:3418 |
Association with transcript: | -4bp_to_ENSMUST00000077115, ENSMUST00000167679, NM_001164401, NM_011216, uc009emu.2, uc009emv.2, uc009emw.2_5end |
EntrezGene: | Ptpro |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.91e-28 | 23 |
neuroblast (sensu Vertebrata) | 7.91e-28 | 23 |
neuron | 3.96e-18 | 33 |
neuronal stem cell | 3.96e-18 | 33 |
neuroblast | 3.96e-18 | 33 |
electrically signaling cell | 3.96e-18 | 33 |
electrically responsive cell | 4.83e-14 | 39 |
electrically active cell | 4.83e-14 | 39 |
neural cell | 5.56e-12 | 43 |
ectodermal cell | 1.58e-11 | 44 |
neurectodermal cell | 1.58e-11 | 44 |
neuron of cerebral cortex | 7.10e-09 | 6 |
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Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.