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MCL coexpression mm9:3425: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0.0363974770700186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502461474843227,0.440513861399464,0.592892418547857,0.193109477544623,0.386949193329338,0,0,0,0.099424903790252,0.109421078997306,0,0,0,0,0.126730149241647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0538027986792206,0.0380188235580625,0,0,0,0,0,0,0,0.297638084790606,0.6045351784605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0851089148667383,0.0980757838043811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0609639314262262,0.0806659819199616,0.0523528812100954,0.0388988969149198,0.0999233952154288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915514965999916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0390607415003592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000333!8.65e-21!10;CL:0000095!8.65e-21!10;CL:0000243!8.65e-21!10;CL:0000123!8.65e-21!10;CL:0000125!8.65e-21!10;CL:0000030!8.65e-21!10;CL:0000339!8.65e-21!10;CL:0000128!3.49e-18!6;CL:0000126!3.49e-18!6;CL:0000127!3.49e-18!6;CL:0002453!1.38e-13!8;CL:0002605!7.70e-10!2;CL:0002604!7.70e-10!2;CL:0000217!8.48e-10!2;CL:0000328!8.48e-10!2;CL:0002573!8.48e-10!2;CL:0002376!8.48e-10!2;CL:0000218!8.48e-10!2;CL:0000692!8.48e-10!2;CL:0002377!8.48e-10!2;CL:0002375!8.48e-10!2;CL:0000055!1.28e-08!49;CL:0002321!7.01e-08!70;CL:0000215!8.61e-07!3;CL:0000630!8.61e-07!3
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000970!8.85e-11!9;UBERON:0000019!8.85e-11!9;UBERON:0000047!8.85e-11!9;UBERON:0010312!8.85e-11!9;UBERON:0004088!8.85e-11!9;UBERON:0002104!8.85e-11!9;UBERON:0001456!8.85e-11!9;UBERON:0003072!8.85e-11!9;UBERON:0004128!8.85e-11!9;UBERON:0003071!8.85e-11!9;UBERON:0001444!8.66e-09!11;UBERON:0000020!4.85e-08!12;UBERON:0001032!4.85e-08!12;UBERON:0004456!4.85e-08!12;UBERON:0000033!2.09e-07!13;UBERON:0005085!2.09e-07!13
}}
}}

Revision as of 20:02, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:88990634..88990643,+p@chr3:88990634..88990643
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Mm9::chr3:88990668..88990679,+p@chr3:88990668..88990679
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Mm9::chr3:88990698..88990709,+p@chr3:88990698..88990709
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
migratory neural crest cell8.65e-2110
neuron associated cell8.65e-2110
glial cell (sensu Vertebrata)8.65e-2110
neuron associated cell (sensu Vertebrata)8.65e-2110
glial cell8.65e-2110
glioblast8.65e-2110
glioblast (sensu Vertebrata)8.65e-2110
oligodendrocyte3.49e-186
macroglial cell3.49e-186
astrocyte3.49e-186
oligodendrocyte precursor cell1.38e-138
astrocyte of the cerebral cortex7.70e-102
astrocyte of the hippocampus7.70e-102
insulating cell8.48e-102
myelin accumulating cell8.48e-102
Schwann cell8.48e-102
non-myelinating Schwann cell8.48e-102
myelinating Schwann cell;;Schwann cell8.48e-102
terminal Schwann cell8.48e-102
immature Schwann cell8.48e-102
Schwann cell precursor8.48e-102
non-terminally differentiated cell1.28e-0849
embryonic cell7.01e-0870
barrier cell8.61e-073
supportive cell8.61e-073

Uber Anatomy
Ontology termp-valuen
eye8.85e-119
camera-type eye8.85e-119
simple eye8.85e-119
immature eye8.85e-119
ocular region8.85e-119
visual system8.85e-119
face8.85e-119
optic cup8.85e-119
optic vesicle8.85e-119
eye primordium8.85e-119
subdivision of head8.66e-0911
sense organ4.85e-0812
sensory system4.85e-0812
entire sense organ system4.85e-0812
head2.09e-0713
ectodermal placode2.09e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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