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MCL coexpression mm9:2525: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!1.22e-25!22;UBERON:0007499!1.22e-25!22;UBERON:0006925!1.22e-25!22;UBERON:0009497!1.22e-25!22;UBERON:0000015!1.22e-25!22;UBERON:0002423!1.22e-25!22;UBERON:0006235!1.22e-25!22;UBERON:0008835!1.22e-25!22;UBERON:0003894!1.22e-25!22;UBERON:0004161!1.22e-25!22;UBERON:0008836!1.22e-25!22;UBERON:0009854!3.07e-24!23;UBERON:0009856!3.07e-24!23;UBERON:0002365!8.91e-22!25;UBERON:0002330!8.91e-22!25;UBERON:0005256!9.56e-13!45;UBERON:0005172!3.75e-12!49;UBERON:0005173!3.75e-12!49;UBERON:0002417!3.75e-12!49;UBERON:0000916!3.75e-12!49;UBERON:0003914!1.01e-08!47;UBERON:0009569!5.15e-08!66;UBERON:0002368!6.41e-08!60;UBERON:0003104!1.09e-07!61;UBERON:0009142!1.09e-07!61;UBERON:0002530!7.72e-07!65
}}
}}

Revision as of 18:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126506152..126506165,-p@chr10:126506152..126506165
-
Mm9::chr10:126788809..126788820,-p2@Inhbe
Mm9::chr10:126788855..126788881,-p1@Inhbe


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver1.22e-2522
epithelial sac1.22e-2522
digestive gland1.22e-2522
epithelium of foregut-midgut junction1.22e-2522
anatomical boundary1.22e-2522
hepatobiliary system1.22e-2522
foregut-midgut junction1.22e-2522
hepatic diverticulum1.22e-2522
liver primordium1.22e-2522
septum transversum1.22e-2522
liver bud1.22e-2522
digestive tract diverticulum3.07e-2423
sac3.07e-2423
exocrine gland8.91e-2225
exocrine system8.91e-2225
trunk mesenchyme9.56e-1345
abdomen element3.75e-1249
abdominal segment element3.75e-1249
abdominal segment of trunk3.75e-1249
abdomen3.75e-1249
epithelial tube1.01e-0847
subdivision of trunk5.15e-0866
endocrine gland6.41e-0860
mesenchyme1.09e-0761
entire embryonic mesenchyme1.09e-0761
gland7.72e-0765


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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