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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!1.10e-17!118;UBERON:0000925!1.10e-17!118;UBERON:0006595!1.10e-17!118;UBERON:0001007!1.69e-16!116;UBERON:0001555!1.69e-16!116;UBERON:0007026!1.69e-16!116;UBERON:0004921!6.47e-16!114;UBERON:0002100!2.16e-14!90;UBERON:0009569!8.05e-14!66;UBERON:0005177!5.68e-13!79;UBERON:0005409!5.71e-11!47;UBERON:0005172!1.82e-09!49;UBERON:0005173!1.82e-09!49;UBERON:0002417!1.82e-09!49;UBERON:0000916!1.82e-09!49;UBERON:0000466!2.30e-09!79;UBERON:0003914!5.07e-09!47;UBERON:0001041!6.80e-09!80;UBERON:0009854!7.81e-08!23;UBERON:0009856!7.81e-08!23;UBERON:0005256!1.36e-07!45;UBERON:0002107!2.62e-07!22;UBERON:0007499!2.62e-07!22;UBERON:0006925!2.62e-07!22;UBERON:0009497!2.62e-07!22;UBERON:0000015!2.62e-07!22;UBERON:0002423!2.62e-07!22;UBERON:0006235!2.62e-07!22;UBERON:0008835!2.62e-07!22;UBERON:0003894!2.62e-07!22;UBERON:0004161!2.62e-07!22;UBERON:0008836!2.62e-07!22;UBERON:0002048!3.87e-07!14;UBERON:0000117!3.87e-07!14;UBERON:0000171!3.87e-07!14;UBERON:0000170!3.87e-07!14;UBERON:0005597!3.87e-07!14;UBERON:0000118!3.87e-07!14;UBERON:0004872!5.39e-07!33
}}
}}

Revision as of 16:28, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:167893754..167893803,-p@chr2:167893754..167893803
-
Mm9::chr9:102910260..102910282,+p@chr9:102910260..102910282
+
Mm9::chr9:102910285..102910306,+p@chr9:102910285..102910306
+
Mm9::chr9:102910310..102910317,+p3@Slco2a1
Mm9::chr9:102910809..102910827,+p1@Slco2a1
Mm9::chr9:102933797..102933802,+p@chr9:102933797..102933802
+
Mm9::chr9:102952568..102952590,+p@chr9:102952568..102952590
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure1.10e-17118
endoderm1.10e-17118
presumptive endoderm1.10e-17118
digestive system1.69e-16116
digestive tract1.69e-16116
primitive gut1.69e-16116
subdivision of digestive tract6.47e-16114
trunk2.16e-1490
subdivision of trunk8.05e-1466
trunk region element5.68e-1379
gastrointestinal system5.71e-1147
abdomen element1.82e-0949
abdominal segment element1.82e-0949
abdominal segment of trunk1.82e-0949
abdomen1.82e-0949
immaterial anatomical entity2.30e-0979
epithelial tube5.07e-0947
foregut6.80e-0980
digestive tract diverticulum7.81e-0823
sac7.81e-0823
trunk mesenchyme1.36e-0745
liver2.62e-0722
epithelial sac2.62e-0722
digestive gland2.62e-0722
epithelium of foregut-midgut junction2.62e-0722
anatomical boundary2.62e-0722
hepatobiliary system2.62e-0722
foregut-midgut junction2.62e-0722
hepatic diverticulum2.62e-0722
liver primordium2.62e-0722
septum transversum2.62e-0722
liver bud2.62e-0722
lung3.87e-0714
respiratory tube3.87e-0714
respiration organ3.87e-0714
pair of lungs3.87e-0714
lung primordium3.87e-0714
lung bud3.87e-0714
splanchnic layer of lateral plate mesoderm5.39e-0733


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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