MCL coexpression mm9:16: Difference between revisions
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811004167185115,0,0,0,0.0609639314262262,0.104536955558926,0.214994395403007,0.265599679938124,1.21806793395418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811004167185115,0,0,0,0.0609639314262262,0.104536955558926,0.214994395403007,0.265599679938124,1.21806793395418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|gostat_on_MCL_coexpression=GO:0007601;visual perception;1.19587012026873e-58;77945,11304,107477,19881,238021,18587,11994,14685,20215,12790,19892,12961,214111,243923,19674,12788,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0050953;sensory perception of light stimulus;1.19587012026873e-58;77945,11304,107477,19881,238021,18587,11994,14685,20215,12790,19892,12961,214111,243923,19674,12788,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0007600;sensory perception;1.45833040805141e-17;77945,11304,107477,19881,238021,18587,11994,14685,21834,20215,12790,19892,12961,171209,214111,243923,19674,12788,16531,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0009582;detection of abiotic stimulus;6.46563244478158e-16;14686,107477,171209,243923,19674,18587,12057,14539,22157,57811,11994,212541,14685,114230!GO:0009583;detection of light stimulus;6.47085964298162e-16;14686,107477,243923,19674,18587,12057,14539,22157,57811,212541,14685,114230!GO:0050877;neurological system process;1.49707646786002e-15;77945,11304,107477,19881,238021,18587,11994,14685,21834,20215,12790,19892,12961,171209,214111,243923,19674,12788,225644,16531,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,13405,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0009581;detection of external stimulus;1.50061355730719e-15;14686,107477,171209,243923,19674,18587,12057,14539,22157,57811,11994,212541,14685,114230!GO:0050906;detection of stimulus during sensory perception;7.96091460373873e-15;14686,107477,171209,243923,19674,12057,14539,22157,57811,11994,212541,14685,19023,114230!GO:0051606;detection of stimulus;7.96091460373873e-15;14686,107477,171209,243923,19674,18587,12057,14539,22157,57811,11994,212541,14685,19023,114230!GO:0009584;detection of visible light;7.96091460373873e-15;14686,107477,243923,19674,12057,14539,22157,57811,212541,14685,114230!GO:0050962;detection of light stimulus during sensory perception;7.96091460373873e-15;14686,107477,243923,19674,12057,14539,22157,57811,212541,14685,114230!GO:0050908;detection of light stimulus during visual perception;7.96091460373873e-15;14686,107477,243923,19674,12057,14539,22157,57811,212541,14685,114230!GO:0003008;system process;1.72025771067236e-14;77945,11304,107477,69994,19881,238021,18587,11994,14685,21834,20215,12790,19892,12961,171209,214111,243923,19674,12788,225644,16531,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,13405,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0007602;phototransduction;2.00731877634854e-13;14686,107477,19674,12057,14539,22157,57811,14685,212541,114230!GO:0009416;response to light stimulus;1.16278272368923e-11;14686,107477,243923,19674,18587,12057,14539,22157,15312,57811,212541,14685,114230!GO:0009314;response to radiation;2.78750028410285e-10;14686,107477,243923,19674,18587,12057,14539,22157,15312,57811,212541,14685,114230!GO:0042995;cell projection;2.21266259138547e-09;77945,19126,17756,14457,69994,218756,14539,230872,243725,11994,212541,12790,22283,57776,73660,12057,12788,16531,170735,27276,15165!GO:0001750;photoreceptor outer segment;2.21266259138547e-09;12790,170735,27276,212541,12057,14539,12788!GO:0009628;response to abiotic stimulus;3.64088548715402e-09;14686,107477,171209,243923,19674,18587,12057,14539,22157,15312,57811,11994,212541,14685,114230!GO:0031513;nonmotile primary cilium;5.92363810106539e-09;12790,170735,27276,212541,12057,14539,12788!GO:0032501;multicellular organismal process;1.10355293100646e-07;77945,21463,11304,14457,231532,19881,21834,18185,19892,330938,23958,243923,19674,16531,18102,67839,21944,19661,19133,108072,271209,14919,225998,13405,78600,12957,14686,18292,68713,114889,170788,319734,110855,20028,114230,22248,17756,107477,12970,238021,69994,18587,12967,17776,11994,14685,12790,20215,12961,12166,171209,214111,107829,225644,12788,54652,18588,225600,14539,212541,19023,22283,18012,12057,245650,170735,22157,12966,57811!GO:0007423;sensory organ development;1.32860788188997e-07;77945,12961,22283,18012,23958,12970,16531,225998,170788,12967,11994,12966,18185,12957!GO:0042461;photoreceptor cell development;3.57925295283417e-07;77945,19892,225998,170788,23958,18185!GO:0005929;cilium;5.98256335703453e-07;230872,12790,170735,77945,27276,212541,12057,14539,12788!GO:0009881;photoreceptor activity;1.34554813795855e-06;22157,57811,212541,12057,14539!GO:0046530;photoreceptor cell differentiation;1.34554813795855e-06;77945,19892,225998,170788,23958,18185!GO:0030553;cGMP binding;2.01516165824335e-05;12790,78600,18588,12788!GO:0019002;GMP binding;2.01516165824335e-05;12790,78600,18588,12788!GO:0005244;voltage-gated ion channel activity;2.01516165824335e-05;12790,240595,211480,12788,16531,54652,319734,16498,15165,16500!GO:0022832;voltage-gated channel activity;2.01516165824335e-05;12790,240595,211480,12788,16531,54652,319734,16498,15165,16500!GO:0001654;eye development;2.20946432194178e-05;77945,18012,23958,12970,170788,225998,12967,12966,18185!GO:0008092;cytoskeletal protein binding;2.32336498287964e-05;245880,218194,17756,212073,14457,330938,544791,238021,13822,17758,230872,269587,80890,13405,17776!GO:0030551;cyclic nucleotide binding;2.50790671704682e-05;12790,15165,78600,18588,12788!GO:0015075;ion transmembrane transporter activity;2.65492647801349e-05;218756,211480,16498,16500,17364,242607,12790,57776,14408,171209,240595,214111,12788,16531,319734,54652,15165!GO:0007468;regulation of rhodopsin gene expression;2.65492647801349e-05;19892,23958,18185!GO:0005216;ion channel activity;3.1020707654144e-05;12790,57776,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500,17364!GO:0022836;gated channel activity;3.35872964396102e-05;12790,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500!GO:0022838;substrate specific channel activity;4.19553681438898e-05;12790,57776,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500,17364!GO:0006811;ion transport;4.47564728840922e-05;218756,211480,16498,16500,17364,12790,108115,57776,14408,171209,240595,19674,214111,12788,16531,319734,54652,15165!GO:0000902;cell morphogenesis;4.75459557092975e-05;77945,17756,14457,12970,238021,13822,230872,22402,225998,11994,18185,19892,57776,23958,269587,170788,54652!GO:0032989;cellular structure morphogenesis;4.75459557092975e-05;77945,17756,14457,12970,238021,13822,230872,22402,225998,11994,18185,19892,57776,23958,269587,170788,54652!GO:0018298;protein-chromophore linkage;6.3789822338551e-05;57811,212541,12057,14539!GO:0008081;phosphoric diester hydrolase activity;6.3789822338551e-05;269615,225600,110855,269437,18587,78600,18588!GO:0004114;3',5'-cyclic-nucleotide phosphodiesterase activity;6.3789822338551e-05;225600,110855,18587,78600,18588!GO:0022803;passive transmembrane transporter activity;6.3789822338551e-05;12790,57776,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500,17364!GO:0015267;channel activity;6.3789822338551e-05;12790,57776,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500,17364!GO:0005261;cation channel activity;7.86407926905127e-05;12790,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500!GO:0005212;structural constituent of eye lens;9.05762455982969e-05;12961,12967,12970,12966,12957!GO:0004112;cyclic-nucleotide phosphodiesterase activity;9.05762455982969e-05;225600,110855,18587,78600,18588!GO:0042462;eye photoreceptor cell development;0.000160008722635578;77945,225998,170788,18185!GO:0001754;eye photoreceptor cell differentiation;0.000281046490415369;77945,225998,170788,18185!GO:0022843;voltage-gated cation channel activity;0.000307191092252146;12790,211480,12788,16531,54652,15165,16500!GO:0046873;metal ion transmembrane transporter activity;0.000340611836142172;12790,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500!GO:0009605;response to external stimulus;0.000371827708429243;14686,107477,171209,243923,19674,18587,12057,14539,16531,22157,57811,11994,212541,14685,114230!GO:0030001;metal ion transport;0.000406606780754375;12790,240595,171209,214111,19674,218756,211480,12788,16531,319734,16498,15165,16500!GO:0005267;potassium channel activity;0.000411406611791519;12790,240595,211480,12788,16531,16498,15165,16500!GO:0022891;substrate-specific transmembrane transporter activity;0.000411406611791519;218756,211480,16498,16500,17364,242607,12790,57776,14408,171209,240595,214111,12788,16531,319734,54652,15165!GO:0047555;3',5'-cyclic-GMP phosphodiesterase activity;0.000545332215096622;225600,110855,18587!GO:0044463;cell projection part;0.000829257606246241;16531,230872,77945,17756,57776,243725!GO:0022857;transmembrane transporter activity;0.00150867841595954;11304,218756,211480,16498,16500,17364,242607,12790,57776,14408,171209,240595,214111,12788,16531,319734,54652,15165!GO:0045872;positive regulation of rhodopsin gene expression;0.00157360075004815;23958,18185!GO:0002046;opsin binding;0.00157360075004815;20215,170735!GO:0030507;spectrin binding;0.00157360075004815;269587,13822!GO:0007010;cytoskeleton organization and biogenesis;0.00157360075004815;17756,14457,544791,238021,13822,269587,17758,234847,268482,51885,243725,11994,107589,22248!GO:0003779;actin binding;0.00175464222809262;245880,218194,212073,14457,330938,544791,238021,13822,269587,13405!GO:0006813;potassium ion transport;0.00175464222809262;12790,240595,211480,12788,16531,16498,15165,16500!GO:0008324;cation transmembrane transporter activity;0.00185433307777557;12790,240595,171209,214111,211480,12788,16531,54652,319734,16498,15165,16500,242607!GO:0006812;cation transport;0.0019570570567938;12790,240595,171209,214111,19674,218756,211480,12788,16531,319734,16498,15165,16500!GO:0005249;voltage-gated potassium channel activity;0.00217653768642809;16531,12790,15165,16500,211480,12788!GO:0005856;cytoskeleton;0.00269514547526946;245880,17756,14457,231532,544791,238021,13822,17758,230872,13405,243725,17776,107589,666060,269587,13191,268482,51885,22248!GO:0051219;phosphoprotein binding;0.00349155109342288;20215,170735,67742!GO:0019934;cGMP-mediated signaling;0.00407428525840868;14686,14685!GO:0007199;G-protein signaling, coupled to cGMP nucleotide second messenger;0.00407428525840868;14686,14685!GO:0031420;alkali metal ion binding;0.00425697891119049;240595,171209,218756,211480,16531,16498,15165,16500!GO:0046068;cGMP metabolic process;0.00518602343069411;114230,245650,14919!GO:0000904;cellular morphogenesis during differentiation;0.0055796680076706;77945,19892,14457,23958,54652,170788,225998,18185!GO:0042578;phosphoric ester hydrolase activity;0.0056062838121286;225600,18640,18587,269615,110855,269437,19245,19023,18588,78600!GO:0015672;monovalent inorganic cation transport;0.00564353638530054;12790,240595,171209,218756,211480,12788,16531,16498,15165,16500!GO:0009653;anatomical structure morphogenesis;0.00564353638530054;77945,17756,14457,231532,12970,238021,13822,230872,22402,225998,11994,21834,18185,19892,57776,12166,23958,269587,16531,170788,54652,21944!GO:0022892;substrate-specific transporter activity;0.00623052116394728;11304,218756,211480,16498,16500,17364,242607,12790,57776,14408,171209,240595,214111,12788,16531,319734,54652,15165!GO:0019898;extrinsic to membrane;0.00675255273539213;14686,269587,14699,14685,13822!GO:0045742;positive regulation of epidermal growth factor receptor signaling pathway;0.00720920201551632;78600,18588!GO:0007015;actin filament organization;0.00727011609199155;243725,14457,11994,238021!GO:0030955;potassium ion binding;0.00823271211956762;16531,16498,15165,240595,16500,211480!GO:0032502;developmental process;0.0084505704632083;77945,17756,67468,21463,22178,14457,231532,12970,238021,13822,12967,11994,17776,21834,18185,19892,12961,57776,12166,330938,23958,107829,16531,18102,67839,54652,21944,329581,230872,22402,225998,13405,12957,22283,18292,18012,68713,114889,269587,170788,12966,13190,114230!GO:0048856;anatomical structure development;0.00891101783142076;77945,17756,14457,231532,12970,238021,13822,12967,11994,21834,18185,19892,12961,57776,12166,23958,107829,16531,18102,54652,67839,21944,230872,225998,22402,13405,12957,18012,22283,269587,170788,12966!GO:0048592;eye morphogenesis;0.00916260164108404;77945,225998,170788,18185!GO:0045745;positive regulation of G-protein coupled receptor protein signaling pathway;0.0111266876384805;78600,18588!GO:0003707;steroid hormone receptor activity;0.0125721476545617;225998,23958,26380,21834!GO:0004879;ligand-dependent nuclear receptor activity;0.0133394467599763;225998,23958,26380,21834!GO:0005515;protein binding;0.0133394467599763;77945,56297,22178,14457,19881,22370,13822,227157,21834,18185,218194,212073,330938,23958,16531,13191,21944,19133,13017,245880,544791,17758,225998,80890,13405,243725,67742,16500,107589,12957,269587,239037,114230,239038,17756,229615,238021,69994,17776,11994,12790,20215,12961,12951,57776,71816,107829,225644,666060,269120,15460,18588,72925,230872,22402,11737,18012,22283,170735,68070,27276,15165!GO:0006583;melanin biosynthetic process from tyrosine;0.0156948678810952;22178,13190!GO:0042058;regulation of epidermal growth factor receptor signaling pathway;0.0156948678810952;78600,18588!GO:0005519;cytoskeletal regulatory protein binding;0.0214604795828888;17758,17756!GO:0044464;cell part;0.0214604795828888;11304,22178,227157,242607,18185,218194,212073,330938,23958,243923,26380,19896,268482,13191,21944,544791,218756,226646,80890,13405,243725,67374,66329,16500,107589,12957,14686,68713,114889,76123,269587,319734,110855,239037,94353,114230,22248,245867,12970,69994,211480,12967,17776,14685,24013,71816,12166,240595,107829,12788,666060,71853,225600,102632,72925,230872,11737,212541,269437,18012,12057,170735,27276,15165,57811,56297,77945,231532,14457,19881,13822,16498,59093,17364,21834,74309,56715,68556,19892,28169,16531,234847,67839,15312,18102,19133,13017,245880,108072,101437,67333,14919,17758,225998,235435,67742,18292,73660,170788,269615,20028,69743,234404,239038,67468,17756,19126,107477,229615,238021,18587,574418,12450,27400,71354,11994,12790,12961,12951,216874,18784,108115,57776,171209,214111,225644,54652,15460,51885,57275,19245,14539,58175,22283,14408,15275,245650,67952,68070,51810,12966,14699,13190,14840!GO:0005623;cell;0.0214604795828888;11304,22178,227157,242607,18185,218194,212073,330938,23958,243923,26380,19896,268482,13191,21944,544791,218756,226646,80890,13405,243725,67374,66329,16500,107589,12957,14686,68713,114889,76123,269587,319734,110855,239037,94353,114230,22248,245867,12970,69994,211480,12967,17776,14685,24013,71816,12166,240595,107829,12788,666060,71853,225600,102632,72925,230872,11737,212541,269437,18012,12057,170735,27276,15165,57811,56297,77945,231532,14457,19881,13822,16498,59093,17364,21834,74309,56715,68556,19892,28169,16531,234847,67839,15312,18102,19133,13017,245880,108072,101437,67333,14919,17758,225998,235435,67742,18292,73660,170788,269615,20028,69743,234404,239038,67468,17756,19126,107477,229615,238021,18587,574418,12450,27400,71354,11994,12790,12961,12951,216874,18784,108115,57776,171209,214111,225644,54652,15460,51885,57275,19245,14539,58175,22283,14408,15275,245650,67952,68070,51810,12966,14699,13190,14840!GO:0060113;inner ear receptor cell differentiation;0.0234820865325012;16531,22283,11994!GO:0060004;reflex;0.0269100813747904;16531,11994!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0269100813747904;269587,13822!GO:0030036;actin cytoskeleton organization and biogenesis;0.03796224458844;269587,243725,14457,11994,238021,13822!GO:0005624;membrane fraction;0.03796224458844;14686,69994,14919,12788,54652,18102,27400,13405,269437,14685,13190!GO:0042490;mechanoreceptor differentiation;0.0384824075422069;16531,22283,11994!GO:0005834;heterotrimeric G-protein complex;0.0384824075422069;14686,14699,14685!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0384824075422069;269587,13822!GO:0042438;melanin biosynthetic process;0.0384824075422069;22178,13190!GO:0031114;regulation of microtubule depolymerization;0.0384824075422069;17758,17756!GO:0045494;photoreceptor cell maintenance;0.0384824075422069;22283,11304!GO:0007026;negative regulation of microtubule depolymerization;0.0384824075422069;17758,17756!GO:0032421;stereocilium bundle;0.0384824075422069;22283,11994!GO:0006582;melanin metabolic process;0.0384824075422069;22178,13190!GO:0007589;fluid secretion;0.0443466103557117;16531,107477!GO:0050974;detection of mechanical stimulus during sensory perception;0.0443466103557117;11994,171209!GO:0004383;guanylate cyclase activity;0.0443466103557117;245650,14919!GO:0006182;cGMP biosynthetic process;0.0443466103557117;245650,14919!GO:0007019;microtubule depolymerization;0.0443466103557117;17758,17756!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0443466103557117;17758,17756!GO:0043167;ion binding;0.0446086434544228;22178,229615,107477,22370,211480,16498,11994,17776,21834,20215,56715,18784,57776,71816,12166,23958,240595,171209,19674,26380,16531,234847,18102,54652,102115,15460,329581,72925,66246,218756,226646,225998,80890,13405,235435,16500,107589,19023,14408,73660,269615,319734,170788,15165,13190,69743!GO:0030029;actin filament-based process;0.0454432384382946;269587,243725,14457,11994,238021,13822!GO:0043005;neuron projection;0.0456638502641762;16531,17756,57776,243725,15165!GO:0009187;cyclic nucleotide metabolic process;0.047160706093281;114230,245650,14919! | |gostat_on_MCL_coexpression=GO:0007601;visual perception;1.19587012026873e-58;77945,11304,107477,19881,238021,18587,11994,14685,20215,12790,19892,12961,214111,243923,19674,12788,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0050953;sensory perception of light stimulus;1.19587012026873e-58;77945,11304,107477,19881,238021,18587,11994,14685,20215,12790,19892,12961,214111,243923,19674,12788,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0007600;sensory perception;1.45833040805141e-17;77945,11304,107477,19881,238021,18587,11994,14685,21834,20215,12790,19892,12961,171209,214111,243923,19674,12788,16531,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0009582;detection of abiotic stimulus;6.46563244478158e-16;14686,107477,171209,243923,19674,18587,12057,14539,22157,57811,11994,212541,14685,114230!GO:0009583;detection of light stimulus;6.47085964298162e-16;14686,107477,243923,19674,18587,12057,14539,22157,57811,212541,14685,114230!GO:0050877;neurological system process;1.49707646786002e-15;77945,11304,107477,19881,238021,18587,11994,14685,21834,20215,12790,19892,12961,171209,214111,243923,19674,12788,225644,16531,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,13405,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0009581;detection of external stimulus;1.50061355730719e-15;14686,107477,171209,243923,19674,18587,12057,14539,22157,57811,11994,212541,14685,114230!GO:0050906;detection of stimulus during sensory perception;7.96091460373873e-15;14686,107477,171209,243923,19674,12057,14539,22157,57811,11994,212541,14685,19023,114230!GO:0051606;detection of stimulus;7.96091460373873e-15;14686,107477,171209,243923,19674,18587,12057,14539,22157,57811,11994,212541,14685,19023,114230!GO:0009584;detection of visible light;7.96091460373873e-15;14686,107477,243923,19674,12057,14539,22157,57811,212541,14685,114230!GO:0050962;detection of light stimulus during sensory perception;7.96091460373873e-15;14686,107477,243923,19674,12057,14539,22157,57811,212541,14685,114230!GO:0050908;detection of light stimulus during visual perception;7.96091460373873e-15;14686,107477,243923,19674,12057,14539,22157,57811,212541,14685,114230!GO:0003008;system process;1.72025771067236e-14;77945,11304,107477,69994,19881,238021,18587,11994,14685,21834,20215,12790,19892,12961,171209,214111,243923,19674,12788,225644,16531,54652,19661,19133,18588,108072,225600,271209,14919,14539,225998,13405,212541,19023,78600,14686,22283,12057,114889,245650,170735,22157,170788,319734,110855,20028,57811,114230,22248!GO:0007602;phototransduction;2.00731877634854e-13;14686,107477,19674,12057,14539,22157,57811,14685,212541,114230!GO:0009416;response to light stimulus;1.16278272368923e-11;14686,107477,243923,19674,18587,12057,14539,22157,15312,57811,212541,14685,114230!GO:0009314;response to radiation;2.78750028410285e-10;14686,107477,243923,19674,18587,12057,14539,22157,15312,57811,212541,14685,114230!GO:0042995;cell projection;2.21266259138547e-09;77945,19126,17756,14457,69994,218756,14539,230872,243725,11994,212541,12790,22283,57776,73660,12057,12788,16531,170735,27276,15165!GO:0001750;photoreceptor outer segment;2.21266259138547e-09;12790,170735,27276,212541,12057,14539,12788!GO:0009628;response to abiotic stimulus;3.64088548715402e-09;14686,107477,171209,243923,19674,18587,12057,14539,22157,15312,57811,11994,212541,14685,114230!GO:0031513;nonmotile primary cilium;5.92363810106539e-09;12790,170735,27276,212541,12057,14539,12788!GO:0032501;multicellular organismal process;1.10355293100646e-07;77945,21463,11304,14457,231532,19881,21834,18185,19892,330938,23958,243923,19674,16531,18102,67839,21944,19661,19133,108072,271209,14919,225998,13405,78600,12957,14686,18292,68713,114889,170788,319734,110855,20028,114230,22248,17756,107477,12970,238021,69994,18587,12967,17776,11994,14685,12790,20215,12961,12166,171209,214111,107829,225644,12788,54652,18588,225600,14539,212541,19023,22283,18012,12057,245650,170735,22157,12966,57811!GO:0007423;sensory organ development;1.32860788188997e-07;77945,12961,22283,18012,23958,12970,16531,225998,170788,12967,11994,12966,18185,12957!GO:0042461;photoreceptor cell development;3.57925295283417e-07;77945,19892,225998,170788,23958,18185!GO:0005929;cilium;5.98256335703453e-07;230872,12790,170735,77945,27276,212541,12057,14539,12788!GO:0009881;photoreceptor activity;1.34554813795855e-06;22157,57811,212541,12057,14539!GO:0046530;photoreceptor cell differentiation;1.34554813795855e-06;77945,19892,225998,170788,23958,18185!GO:0030553;cGMP binding;2.01516165824335e-05;12790,78600,18588,12788!GO:0019002;GMP binding;2.01516165824335e-05;12790,78600,18588,12788!GO:0005244;voltage-gated ion channel activity;2.01516165824335e-05;12790,240595,211480,12788,16531,54652,319734,16498,15165,16500!GO:0022832;voltage-gated channel activity;2.01516165824335e-05;12790,240595,211480,12788,16531,54652,319734,16498,15165,16500!GO:0001654;eye development;2.20946432194178e-05;77945,18012,23958,12970,170788,225998,12967,12966,18185!GO:0008092;cytoskeletal protein binding;2.32336498287964e-05;245880,218194,17756,212073,14457,330938,544791,238021,13822,17758,230872,269587,80890,13405,17776!GO:0030551;cyclic nucleotide binding;2.50790671704682e-05;12790,15165,78600,18588,12788!GO:0015075;ion transmembrane transporter activity;2.65492647801349e-05;218756,211480,16498,16500,17364,242607,12790,57776,14408,171209,240595,214111,12788,16531,319734,54652,15165!GO:0007468;regulation of rhodopsin gene expression;2.65492647801349e-05;19892,23958,18185!GO:0005216;ion channel activity;3.1020707654144e-05;12790,57776,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500,17364!GO:0022836;gated channel activity;3.35872964396102e-05;12790,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500!GO:0022838;substrate specific channel activity;4.19553681438898e-05;12790,57776,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500,17364!GO:0006811;ion transport;4.47564728840922e-05;218756,211480,16498,16500,17364,12790,108115,57776,14408,171209,240595,19674,214111,12788,16531,319734,54652,15165!GO:0000902;cell morphogenesis;4.75459557092975e-05;77945,17756,14457,12970,238021,13822,230872,22402,225998,11994,18185,19892,57776,23958,269587,170788,54652!GO:0032989;cellular structure morphogenesis;4.75459557092975e-05;77945,17756,14457,12970,238021,13822,230872,22402,225998,11994,18185,19892,57776,23958,269587,170788,54652!GO:0018298;protein-chromophore linkage;6.3789822338551e-05;57811,212541,12057,14539!GO:0008081;phosphoric diester hydrolase activity;6.3789822338551e-05;269615,225600,110855,269437,18587,78600,18588!GO:0004114;3',5'-cyclic-nucleotide phosphodiesterase activity;6.3789822338551e-05;225600,110855,18587,78600,18588!GO:0022803;passive transmembrane transporter activity;6.3789822338551e-05;12790,57776,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500,17364!GO:0015267;channel activity;6.3789822338551e-05;12790,57776,14408,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500,17364!GO:0005261;cation channel activity;7.86407926905127e-05;12790,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500!GO:0005212;structural constituent of eye lens;9.05762455982969e-05;12961,12967,12970,12966,12957!GO:0004112;cyclic-nucleotide phosphodiesterase activity;9.05762455982969e-05;225600,110855,18587,78600,18588!GO:0042462;eye photoreceptor cell development;0.000160008722635578;77945,225998,170788,18185!GO:0001754;eye photoreceptor cell differentiation;0.000281046490415369;77945,225998,170788,18185!GO:0022843;voltage-gated cation channel activity;0.000307191092252146;12790,211480,12788,16531,54652,15165,16500!GO:0046873;metal ion transmembrane transporter activity;0.000340611836142172;12790,240595,171209,211480,12788,16531,54652,319734,16498,15165,16500!GO:0009605;response to external stimulus;0.000371827708429243;14686,107477,171209,243923,19674,18587,12057,14539,16531,22157,57811,11994,212541,14685,114230!GO:0030001;metal ion transport;0.000406606780754375;12790,240595,171209,214111,19674,218756,211480,12788,16531,319734,16498,15165,16500!GO:0005267;potassium channel activity;0.000411406611791519;12790,240595,211480,12788,16531,16498,15165,16500!GO:0022891;substrate-specific transmembrane transporter activity;0.000411406611791519;218756,211480,16498,16500,17364,242607,12790,57776,14408,171209,240595,214111,12788,16531,319734,54652,15165!GO:0047555;3',5'-cyclic-GMP phosphodiesterase activity;0.000545332215096622;225600,110855,18587!GO:0044463;cell projection part;0.000829257606246241;16531,230872,77945,17756,57776,243725!GO:0022857;transmembrane transporter activity;0.00150867841595954;11304,218756,211480,16498,16500,17364,242607,12790,57776,14408,171209,240595,214111,12788,16531,319734,54652,15165!GO:0045872;positive regulation of rhodopsin gene expression;0.00157360075004815;23958,18185!GO:0002046;opsin binding;0.00157360075004815;20215,170735!GO:0030507;spectrin binding;0.00157360075004815;269587,13822!GO:0007010;cytoskeleton organization and biogenesis;0.00157360075004815;17756,14457,544791,238021,13822,269587,17758,234847,268482,51885,243725,11994,107589,22248!GO:0003779;actin binding;0.00175464222809262;245880,218194,212073,14457,330938,544791,238021,13822,269587,13405!GO:0006813;potassium ion transport;0.00175464222809262;12790,240595,211480,12788,16531,16498,15165,16500!GO:0008324;cation transmembrane transporter activity;0.00185433307777557;12790,240595,171209,214111,211480,12788,16531,54652,319734,16498,15165,16500,242607!GO:0006812;cation transport;0.0019570570567938;12790,240595,171209,214111,19674,218756,211480,12788,16531,319734,16498,15165,16500!GO:0005249;voltage-gated potassium channel activity;0.00217653768642809;16531,12790,15165,16500,211480,12788!GO:0005856;cytoskeleton;0.00269514547526946;245880,17756,14457,231532,544791,238021,13822,17758,230872,13405,243725,17776,107589,666060,269587,13191,268482,51885,22248!GO:0051219;phosphoprotein binding;0.00349155109342288;20215,170735,67742!GO:0019934;cGMP-mediated signaling;0.00407428525840868;14686,14685!GO:0007199;G-protein signaling, coupled to cGMP nucleotide second messenger;0.00407428525840868;14686,14685!GO:0031420;alkali metal ion binding;0.00425697891119049;240595,171209,218756,211480,16531,16498,15165,16500!GO:0046068;cGMP metabolic process;0.00518602343069411;114230,245650,14919!GO:0000904;cellular morphogenesis during differentiation;0.0055796680076706;77945,19892,14457,23958,54652,170788,225998,18185!GO:0042578;phosphoric ester hydrolase activity;0.0056062838121286;225600,18640,18587,269615,110855,269437,19245,19023,18588,78600!GO:0015672;monovalent inorganic cation transport;0.00564353638530054;12790,240595,171209,218756,211480,12788,16531,16498,15165,16500!GO:0009653;anatomical structure morphogenesis;0.00564353638530054;77945,17756,14457,231532,12970,238021,13822,230872,22402,225998,11994,21834,18185,19892,57776,12166,23958,269587,16531,170788,54652,21944!GO:0022892;substrate-specific transporter activity;0.00623052116394728;11304,218756,211480,16498,16500,17364,242607,12790,57776,14408,171209,240595,214111,12788,16531,319734,54652,15165!GO:0019898;extrinsic to membrane;0.00675255273539213;14686,269587,14699,14685,13822!GO:0045742;positive regulation of epidermal growth factor receptor signaling pathway;0.00720920201551632;78600,18588!GO:0007015;actin filament organization;0.00727011609199155;243725,14457,11994,238021!GO:0030955;potassium ion binding;0.00823271211956762;16531,16498,15165,240595,16500,211480!GO:0032502;developmental process;0.0084505704632083;77945,17756,67468,21463,22178,14457,231532,12970,238021,13822,12967,11994,17776,21834,18185,19892,12961,57776,12166,330938,23958,107829,16531,18102,67839,54652,21944,329581,230872,22402,225998,13405,12957,22283,18292,18012,68713,114889,269587,170788,12966,13190,114230!GO:0048856;anatomical structure development;0.00891101783142076;77945,17756,14457,231532,12970,238021,13822,12967,11994,21834,18185,19892,12961,57776,12166,23958,107829,16531,18102,54652,67839,21944,230872,225998,22402,13405,12957,18012,22283,269587,170788,12966!GO:0048592;eye morphogenesis;0.00916260164108404;77945,225998,170788,18185!GO:0045745;positive regulation of G-protein coupled receptor protein signaling pathway;0.0111266876384805;78600,18588!GO:0003707;steroid hormone receptor activity;0.0125721476545617;225998,23958,26380,21834!GO:0004879;ligand-dependent nuclear receptor activity;0.0133394467599763;225998,23958,26380,21834!GO:0005515;protein binding;0.0133394467599763;77945,56297,22178,14457,19881,22370,13822,227157,21834,18185,218194,212073,330938,23958,16531,13191,21944,19133,13017,245880,544791,17758,225998,80890,13405,243725,67742,16500,107589,12957,269587,239037,114230,239038,17756,229615,238021,69994,17776,11994,12790,20215,12961,12951,57776,71816,107829,225644,666060,269120,15460,18588,72925,230872,22402,11737,18012,22283,170735,68070,27276,15165!GO:0006583;melanin biosynthetic process from tyrosine;0.0156948678810952;22178,13190!GO:0042058;regulation of epidermal growth factor receptor signaling pathway;0.0156948678810952;78600,18588!GO:0005519;cytoskeletal regulatory protein binding;0.0214604795828888;17758,17756!GO:0044464;cell part;0.0214604795828888;11304,22178,227157,242607,18185,218194,212073,330938,23958,243923,26380,19896,268482,13191,21944,544791,218756,226646,80890,13405,243725,67374,66329,16500,107589,12957,14686,68713,114889,76123,269587,319734,110855,239037,94353,114230,22248,245867,12970,69994,211480,12967,17776,14685,24013,71816,12166,240595,107829,12788,666060,71853,225600,102632,72925,230872,11737,212541,269437,18012,12057,170735,27276,15165,57811,56297,77945,231532,14457,19881,13822,16498,59093,17364,21834,74309,56715,68556,19892,28169,16531,234847,67839,15312,18102,19133,13017,245880,108072,101437,67333,14919,17758,225998,235435,67742,18292,73660,170788,269615,20028,69743,234404,239038,67468,17756,19126,107477,229615,238021,18587,574418,12450,27400,71354,11994,12790,12961,12951,216874,18784,108115,57776,171209,214111,225644,54652,15460,51885,57275,19245,14539,58175,22283,14408,15275,245650,67952,68070,51810,12966,14699,13190,14840!GO:0005623;cell;0.0214604795828888;11304,22178,227157,242607,18185,218194,212073,330938,23958,243923,26380,19896,268482,13191,21944,544791,218756,226646,80890,13405,243725,67374,66329,16500,107589,12957,14686,68713,114889,76123,269587,319734,110855,239037,94353,114230,22248,245867,12970,69994,211480,12967,17776,14685,24013,71816,12166,240595,107829,12788,666060,71853,225600,102632,72925,230872,11737,212541,269437,18012,12057,170735,27276,15165,57811,56297,77945,231532,14457,19881,13822,16498,59093,17364,21834,74309,56715,68556,19892,28169,16531,234847,67839,15312,18102,19133,13017,245880,108072,101437,67333,14919,17758,225998,235435,67742,18292,73660,170788,269615,20028,69743,234404,239038,67468,17756,19126,107477,229615,238021,18587,574418,12450,27400,71354,11994,12790,12961,12951,216874,18784,108115,57776,171209,214111,225644,54652,15460,51885,57275,19245,14539,58175,22283,14408,15275,245650,67952,68070,51810,12966,14699,13190,14840!GO:0060113;inner ear receptor cell differentiation;0.0234820865325012;16531,22283,11994!GO:0060004;reflex;0.0269100813747904;16531,11994!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0269100813747904;269587,13822!GO:0030036;actin cytoskeleton organization and biogenesis;0.03796224458844;269587,243725,14457,11994,238021,13822!GO:0005624;membrane fraction;0.03796224458844;14686,69994,14919,12788,54652,18102,27400,13405,269437,14685,13190!GO:0042490;mechanoreceptor differentiation;0.0384824075422069;16531,22283,11994!GO:0005834;heterotrimeric G-protein complex;0.0384824075422069;14686,14699,14685!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0384824075422069;269587,13822!GO:0042438;melanin biosynthetic process;0.0384824075422069;22178,13190!GO:0031114;regulation of microtubule depolymerization;0.0384824075422069;17758,17756!GO:0045494;photoreceptor cell maintenance;0.0384824075422069;22283,11304!GO:0007026;negative regulation of microtubule depolymerization;0.0384824075422069;17758,17756!GO:0032421;stereocilium bundle;0.0384824075422069;22283,11994!GO:0006582;melanin metabolic process;0.0384824075422069;22178,13190!GO:0007589;fluid secretion;0.0443466103557117;16531,107477!GO:0050974;detection of mechanical stimulus during sensory perception;0.0443466103557117;11994,171209!GO:0004383;guanylate cyclase activity;0.0443466103557117;245650,14919!GO:0006182;cGMP biosynthetic process;0.0443466103557117;245650,14919!GO:0007019;microtubule depolymerization;0.0443466103557117;17758,17756!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0443466103557117;17758,17756!GO:0043167;ion binding;0.0446086434544228;22178,229615,107477,22370,211480,16498,11994,17776,21834,20215,56715,18784,57776,71816,12166,23958,240595,171209,19674,26380,16531,234847,18102,54652,102115,15460,329581,72925,66246,218756,226646,225998,80890,13405,235435,16500,107589,19023,14408,73660,269615,319734,170788,15165,13190,69743!GO:0030029;actin filament-based process;0.0454432384382946;269587,243725,14457,11994,238021,13822!GO:0043005;neuron projection;0.0456638502641762;16531,17756,57776,243725,15165!GO:0009187;cyclic nucleotide metabolic process;0.047160706093281;114230,245650,14919! | ||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0000970!5.24e-58!9;UBERON:0000019!5.24e-58!9;UBERON:0000047!5.24e-58!9;UBERON:0010312!5.24e-58!9;UBERON:0004088!5.24e-58!9;UBERON:0002104!5.24e-58!9;UBERON:0001456!5.24e-58!9;UBERON:0003072!5.24e-58!9;UBERON:0004128!5.24e-58!9;UBERON:0003071!5.24e-58!9;UBERON:0001444!1.34e-47!11;UBERON:0000020!1.08e-43!12;UBERON:0001032!1.08e-43!12;UBERON:0004456!1.08e-43!12;UBERON:0000033!2.18e-40!13;UBERON:0005085!2.18e-40!13;UBERON:0007811!5.99e-15!36;UBERON:0000153!1.38e-12!43;UBERON:0003056!4.27e-11!49;UBERON:0002346!1.41e-08!64;UBERON:0003075!1.41e-08!64;UBERON:0007284!1.41e-08!64;UBERON:0010371!1.48e-07!73 | |||
}} | }} |
Revision as of 17:08, 11 October 2012
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0007601 | visual perception | 1.19587012026873e-58 |
GO:0050953 | sensory perception of light stimulus | 1.19587012026873e-58 |
GO:0007600 | sensory perception | 1.45833040805141e-17 |
GO:0009582 | detection of abiotic stimulus | 6.46563244478158e-16 |
GO:0009583 | detection of light stimulus | 6.47085964298162e-16 |
GO:0050877 | neurological system process | 1.49707646786002e-15 |
GO:0009581 | detection of external stimulus | 1.50061355730719e-15 |
GO:0050906 | detection of stimulus during sensory perception | 7.96091460373873e-15 |
GO:0051606 | detection of stimulus | 7.96091460373873e-15 |
GO:0009584 | detection of visible light | 7.96091460373873e-15 |
GO:0050962 | detection of light stimulus during sensory perception | 7.96091460373873e-15 |
GO:0050908 | detection of light stimulus during visual perception | 7.96091460373873e-15 |
GO:0003008 | system process | 1.72025771067236e-14 |
GO:0007602 | phototransduction | 2.00731877634854e-13 |
GO:0009416 | response to light stimulus | 1.16278272368923e-11 |
GO:0009314 | response to radiation | 2.78750028410285e-10 |
GO:0042995 | cell projection | 2.21266259138547e-09 |
GO:0001750 | photoreceptor outer segment | 2.21266259138547e-09 |
GO:0009628 | response to abiotic stimulus | 3.64088548715402e-09 |
GO:0031513 | nonmotile primary cilium | 5.92363810106539e-09 |
GO:0032501 | multicellular organismal process | 1.10355293100646e-07 |
GO:0007423 | sensory organ development | 1.32860788188997e-07 |
GO:0042461 | photoreceptor cell development | 3.57925295283417e-07 |
GO:0005929 | cilium | 5.98256335703453e-07 |
GO:0009881 | photoreceptor activity | 1.34554813795855e-06 |
GO:0046530 | photoreceptor cell differentiation | 1.34554813795855e-06 |
GO:0030553 | cGMP binding | 2.01516165824335e-05 |
GO:0019002 | GMP binding | 2.01516165824335e-05 |
GO:0005244 | voltage-gated ion channel activity | 2.01516165824335e-05 |
GO:0022832 | voltage-gated channel activity | 2.01516165824335e-05 |
GO:0001654 | eye development | 2.20946432194178e-05 |
GO:0008092 | cytoskeletal protein binding | 2.32336498287964e-05 |
GO:0030551 | cyclic nucleotide binding | 2.50790671704682e-05 |
GO:0015075 | ion transmembrane transporter activity | 2.65492647801349e-05 |
GO:0007468 | regulation of rhodopsin gene expression | 2.65492647801349e-05 |
GO:0005216 | ion channel activity | 3.1020707654144e-05 |
GO:0022836 | gated channel activity | 3.35872964396102e-05 |
GO:0022838 | substrate specific channel activity | 4.19553681438898e-05 |
GO:0006811 | ion transport | 4.47564728840922e-05 |
GO:0000902 | cell morphogenesis | 4.75459557092975e-05 |
GO:0032989 | cellular structure morphogenesis | 4.75459557092975e-05 |
GO:0018298 | protein-chromophore linkage | 6.3789822338551e-05 |
GO:0008081 | phosphoric diester hydrolase activity | 6.3789822338551e-05 |
GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | 6.3789822338551e-05 |
GO:0022803 | passive transmembrane transporter activity | 6.3789822338551e-05 |
GO:0015267 | channel activity | 6.3789822338551e-05 |
GO:0005261 | cation channel activity | 7.86407926905127e-05 |
GO:0005212 | structural constituent of eye lens | 9.05762455982969e-05 |
GO:0004112 | cyclic-nucleotide phosphodiesterase activity | 9.05762455982969e-05 |
GO:0042462 | eye photoreceptor cell development | 0.000160008722635578 |
GO:0001754 | eye photoreceptor cell differentiation | 0.000281046490415369 |
GO:0022843 | voltage-gated cation channel activity | 0.000307191092252146 |
GO:0046873 | metal ion transmembrane transporter activity | 0.000340611836142172 |
GO:0009605 | response to external stimulus | 0.000371827708429243 |
GO:0030001 | metal ion transport | 0.000406606780754375 |
GO:0005267 | potassium channel activity | 0.000411406611791519 |
GO:0022891 | substrate-specific transmembrane transporter activity | 0.000411406611791519 |
GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity | 0.000545332215096622 |
GO:0044463 | cell projection part | 0.000829257606246241 |
GO:0022857 | transmembrane transporter activity | 0.00150867841595954 |
GO:0045872 | positive regulation of rhodopsin gene expression | 0.00157360075004815 |
GO:0002046 | opsin binding | 0.00157360075004815 |
GO:0030507 | spectrin binding | 0.00157360075004815 |
GO:0007010 | cytoskeleton organization and biogenesis | 0.00157360075004815 |
GO:0003779 | actin binding | 0.00175464222809262 |
GO:0006813 | potassium ion transport | 0.00175464222809262 |
GO:0008324 | cation transmembrane transporter activity | 0.00185433307777557 |
GO:0006812 | cation transport | 0.0019570570567938 |
GO:0005249 | voltage-gated potassium channel activity | 0.00217653768642809 |
GO:0005856 | cytoskeleton | 0.00269514547526946 |
GO:0051219 | phosphoprotein binding | 0.00349155109342288 |
GO:0019934 | cGMP-mediated signaling | 0.00407428525840868 |
GO:0007199 | G-protein signaling, coupled to cGMP nucleotide second messenger | 0.00407428525840868 |
GO:0031420 | alkali metal ion binding | 0.00425697891119049 |
GO:0046068 | cGMP metabolic process | 0.00518602343069411 |
GO:0000904 | cellular morphogenesis during differentiation | 0.0055796680076706 |
GO:0042578 | phosphoric ester hydrolase activity | 0.0056062838121286 |
GO:0015672 | monovalent inorganic cation transport | 0.00564353638530054 |
GO:0009653 | anatomical structure morphogenesis | 0.00564353638530054 |
GO:0022892 | substrate-specific transporter activity | 0.00623052116394728 |
GO:0019898 | extrinsic to membrane | 0.00675255273539213 |
GO:0045742 | positive regulation of epidermal growth factor receptor signaling pathway | 0.00720920201551632 |
GO:0007015 | actin filament organization | 0.00727011609199155 |
GO:0030955 | potassium ion binding | 0.00823271211956762 |
GO:0032502 | developmental process | 0.0084505704632083 |
GO:0048856 | anatomical structure development | 0.00891101783142076 |
GO:0048592 | eye morphogenesis | 0.00916260164108404 |
GO:0045745 | positive regulation of G-protein coupled receptor protein signaling pathway | 0.0111266876384805 |
GO:0003707 | steroid hormone receptor activity | 0.0125721476545617 |
GO:0004879 | ligand-dependent nuclear receptor activity | 0.0133394467599763 |
GO:0005515 | protein binding | 0.0133394467599763 |
GO:0006583 | melanin biosynthetic process from tyrosine | 0.0156948678810952 |
GO:0042058 | regulation of epidermal growth factor receptor signaling pathway | 0.0156948678810952 |
GO:0005519 | cytoskeletal regulatory protein binding | 0.0214604795828888 |
GO:0044464 | cell part | 0.0214604795828888 |
GO:0005623 | cell | 0.0214604795828888 |
GO:0060113 | inner ear receptor cell differentiation | 0.0234820865325012 |
GO:0060004 | reflex | 0.0269100813747904 |
GO:0030866 | cortical actin cytoskeleton organization and biogenesis | 0.0269100813747904 |
GO:0030036 | actin cytoskeleton organization and biogenesis | 0.03796224458844 |
GO:0005624 | membrane fraction | 0.03796224458844 |
GO:0042490 | mechanoreceptor differentiation | 0.0384824075422069 |
GO:0005834 | heterotrimeric G-protein complex | 0.0384824075422069 |
GO:0030865 | cortical cytoskeleton organization and biogenesis | 0.0384824075422069 |
GO:0042438 | melanin biosynthetic process | 0.0384824075422069 |
GO:0031114 | regulation of microtubule depolymerization | 0.0384824075422069 |
GO:0045494 | photoreceptor cell maintenance | 0.0384824075422069 |
GO:0007026 | negative regulation of microtubule depolymerization | 0.0384824075422069 |
GO:0032421 | stereocilium bundle | 0.0384824075422069 |
GO:0006582 | melanin metabolic process | 0.0384824075422069 |
GO:0007589 | fluid secretion | 0.0443466103557117 |
GO:0050974 | detection of mechanical stimulus during sensory perception | 0.0443466103557117 |
GO:0004383 | guanylate cyclase activity | 0.0443466103557117 |
GO:0006182 | cGMP biosynthetic process | 0.0443466103557117 |
GO:0007019 | microtubule depolymerization | 0.0443466103557117 |
GO:0031111 | negative regulation of microtubule polymerization or depolymerization | 0.0443466103557117 |
GO:0043167 | ion binding | 0.0446086434544228 |
GO:0030029 | actin filament-based process | 0.0454432384382946 |
GO:0043005 | neuron projection | 0.0456638502641762 |
GO:0009187 | cyclic nucleotide metabolic process | 0.047160706093281 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
eye | 5.24e-58 | 9 |
camera-type eye | 5.24e-58 | 9 |
simple eye | 5.24e-58 | 9 |
immature eye | 5.24e-58 | 9 |
ocular region | 5.24e-58 | 9 |
visual system | 5.24e-58 | 9 |
face | 5.24e-58 | 9 |
optic cup | 5.24e-58 | 9 |
optic vesicle | 5.24e-58 | 9 |
eye primordium | 5.24e-58 | 9 |
subdivision of head | 1.34e-47 | 11 |
sense organ | 1.08e-43 | 12 |
sensory system | 1.08e-43 | 12 |
entire sense organ system | 1.08e-43 | 12 |
head | 2.18e-40 | 13 |
ectodermal placode | 2.18e-40 | 13 |
craniocervical region | 5.99e-15 | 36 |
anterior region of body | 1.38e-12 | 43 |
pre-chordal neural plate | 4.27e-11 | 49 |
neurectoderm | 1.41e-08 | 64 |
neural plate | 1.41e-08 | 64 |
presumptive neural plate | 1.41e-08 | 64 |
ecto-epithelium | 1.48e-07 | 73 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |