Personal tools

Coexpression cluster:C2378: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|full_id=C2378_Hepatocyte_skeletal_heart_liver_medulla_colon_pancreas
|full_id=C2378_Hepatocyte_skeletal_heart_liver_medulla_colon_pancreas
|id=C2378
|id=C2378
|ontology_enrichment_celltype=CL:0002076!4.14e-07!43;CL:0000223!4.39e-07!59
|ontology_enrichment_celltype=CL:0000223!1.73e-09!58;CL:0002076!2.79e-09!42;CL:0002368!4.56e-07!13
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007023!9.83e-19!115;UBERON:0000481!2.66e-10!347;UBERON:0001049!6.11e-10!57;UBERON:0005068!6.11e-10!57;UBERON:0006241!6.11e-10!57;UBERON:0007135!6.11e-10!57;UBERON:0004119!4.53e-09!169;UBERON:0000925!4.53e-09!169;UBERON:0006595!4.53e-09!169;UBERON:0001007!4.36e-08!155;UBERON:0001555!4.36e-08!155;UBERON:0007026!4.36e-08!155;UBERON:0004921!1.83e-07!129;UBERON:0004185!1.83e-07!129;UBERON:0002616!1.97e-07!59;UBERON:0001004!2.20e-07!72;UBERON:0000475!5.69e-07!365;UBERON:0001017!5.96e-07!82;UBERON:0002346!6.20e-07!90;UBERON:0002020!7.98e-07!34;UBERON:0003528!7.98e-07!34;UBERON:0002780!8.27e-07!41;UBERON:0001890!8.27e-07!41;UBERON:0006240!8.27e-07!41
|ontology_enrichment_uberon=UBERON:0007023!1.05e-21!114;UBERON:0011216!1.23e-14!223;UBERON:0001049!7.39e-12!56;UBERON:0005068!7.39e-12!56;UBERON:0006241!7.39e-12!56;UBERON:0007135!7.39e-12!56;UBERON:0004119!9.08e-11!160;UBERON:0000925!9.08e-11!160;UBERON:0006595!9.08e-11!160;UBERON:0000073!2.36e-10!53;UBERON:0002616!2.36e-10!53;UBERON:0001007!1.24e-09!145;UBERON:0001555!1.24e-09!145;UBERON:0007026!1.24e-09!145;UBERON:0002346!2.12e-09!86;UBERON:0004921!2.93e-09!118;UBERON:0000466!3.82e-09!117;UBERON:0003075!6.22e-09!82;UBERON:0007284!6.22e-09!82;UBERON:0000464!8.42e-09!95;UBERON:0001017!1.18e-08!81;UBERON:0001004!1.23e-08!74;UBERON:0001041!1.39e-08!87;UBERON:0000955!3.46e-08!68;UBERON:0006238!3.46e-08!68;UBERON:0002780!5.73e-08!41;UBERON:0001890!5.73e-08!41;UBERON:0003080!5.73e-08!41;UBERON:0006240!5.73e-08!41;UBERON:0001016!9.02e-08!89;UBERON:0000481!9.06e-08!342;UBERON:0003528!1.39e-07!34;UBERON:0002020!1.39e-07!34;UBERON:0000065!3.72e-07!54;UBERON:0010371!4.52e-07!104
|tf_chipseq_enrich=CTCF#10664;4:5.36025637307503:0.00121114538164362:0.00816754778288102!MAFK#7975;3:20.3255498533724:0.000195321368893111:0.00235067624404559
|tf_chipseq_enrich=CTCF#10664;4:5.36025637307503:0.00121114538164362:0.00816754778288102!MAFK#7975;3:20.3255498533724:0.000195321368893111:0.00235067624404559
|tfbs_overrepresentation=0.191353,0.0774498,0.50138,0.0631091,0.257053,0.00122022,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.0323255,0.172742,0.107781,0.124486,0.0550418,0.0423226,0.268949,0.119094,0.0186717,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.000181498,0.157881,0.0480278,0.0503649,0.234372,0.145553,3.1982e-05,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.0412226,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.0083674,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.0437659,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.00199911,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.000877371,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.00252165,0.179282,0.202544,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.0687034,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.0901258,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.00179581,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.00108189,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.000188741,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.112868,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.114577,0.810881,0.603871,0.389734,0.668426,0.000670052,0.0719958,0.420045,0.00243927,0.332539,0.00863402,0.00385231,0.389374,0.00236126,0.414547,0.00499259,0.413223,0.00397825,7.85666e-06,0.34505,0.000118068,0.000756111,0.49089,2.95743e-05,0.702495,0.000195264,0.122191,0.234628,0.520726,0.143893,0.0172441,0.0434592,0.524104,0.132138,0.051755,0.751064,0.632838,9.33444e-08,0.460819,9.12019e-07,0.0601683,0.0073977,0.0703732,0.380582,0.012328,0.00185628,0.286293,0.00272999,0.708425,0.359128,0.0146894,0.0065023,0.368633,0.0463511,0.0292801,0.00630994,0.0116693,0.578349,0.00804842,3.29054e-07,0.00120723,0.714007,0.235444,0.804772,0.899283,0.279301,0.349116,0.0510948,0.239545,0.432689,0.640367,0.343881,0.377117,0.606382,0.617741,7.55866e-05,0.316925,0.356561,0.0112414,0.211506,0.0883859,0.0962508,0.238465,0.341199,0.301365,0.00127963,0.508325,0.0636247,0.000115715,0.656755,0.54723,0.280307,0.393583,0.212518,0.0596868,0.0984075,1.79547e-06,0.753513,0.332526,0.605423,0.0013522,0.109146,0.578951,0.365653,0.41035,0.784024,0.35234,0.180014,0.000127213,0.00530385,0.104649,0.25441,0.202782,0.307342,1.04473e-06,0.0124357,0.00657735,0.0171365,0.926442,0.419676,0.188259,0.189182,0.477589,0.0260996,0.00134091,0.198922,0.058245,0.198207,0.0616078,0.00109374,0.0615778,0.175552,0.129238,0.283924,0.370995,7.52097e-06,0.0194906,0.0135024,0.385297,0.00167285,0.00272527,1.00913e-06,0.360203,0.00825487,0.447838,0.289666,0.500627,0.513045,0.452694,2.53857e-07,0.845507,0.265037,0.629795,0.167853,0.53531,0.341771,0.106541,0.657528,0.00110716,0.184395,0.55524,7.35207e-05,0.206945,0.304719,0.00378814,0.296994,0.244339,0.117049,0.0786167,0.629381,0.0109535,0.433821,0.0211186,0.436806,0.00192277,0.499072,0.00283311,1.40193e-06,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.00833305,0.183047,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.0164151,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.111145,0.0660736,0.108971,0.0879235,0.00263193,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.00273651,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,3.02961e-07,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.0170294,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.00648069,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.0303627,0.302909,0.363016,0.100188,0.0269772,0.107653,0.235857,0.419621,0.0197215,0.184022,0.216557,0.00118257,0.116818,0.389792,0.0757944,0.0625685,0.124464,0.00856472,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.0705088,0.833813,0.758305,0.278645,0.00124796,0.155708,0.0336707,0.22995,0.00463504,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.960445,0.974549,0.265324,0.000372329,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.0385301,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.00306463,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.00283685,0.225961,0.124417,0.00840896,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.32805,0.21618,0.0323312,0.107021,0.238657,0.20272,1.39025e-05,0.0164195,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.724669,0.0478217,0.158752,0.170854,0.0575231,0.174063,0.514243,0.003653,0.54832,0.154964,0.296013,0.000760863,0.537932,0.459994,0.523209,0.00885937,0.25423,0.146971,0.45013,0.500698,0.135135,2.88626e-05,0.747471,0.529642,0.509113,0.483077,0.590496,0.603763,0.00126891,0.0778742,0.938109,0.934991,0.290703,0.017476,0.0413786,0.478691,0.360199,0.0153629,0.290133,0.253797,0.0111989,0.212703,0.201391,0.364079,0.680099,0.579886,0.104625,0.569409,0.0610883,0.545608,0.310552,0.865054,0.142433,0.829658,0.0698158,0.209437,0.55323,0.161672,0.598945,0.882403,0.00046932,0.871271,0.214786,0.150592,0.839946,0.0155453,0.261575,0.257956,0.264245,0.379063,0.0602936,0.16985,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.0106153,0.025886,0.39549,0.234254,0.357409,0.599068,0.721266,0.50338,0.620526,0.404625,0.759068,0.106633,0.715362,0.479581,0.62689,0.635682,0.274432,0.000400972,0.512545,0.162017,0.0515768,0.527709,0.684899,0.263302,2.12448e-05,0.180735,0.000163899,0.216102,0.254659,0.109605,0.00184531,3.23226e-08,0.226491,0.417131,0.463987,0.000560419,0.503881,0.454761,0.0202528,0.483658,0.122467,0.301581,0.261657,0.346776,0.466529,0.545655,0.00291646,0.349112,0.741477,0.385425,0.307816,0.461541,0.386339,0.382854,0.598787,0.478745,0.24434,0.319747,0.475047,0.557967,4.02686e-10,0.282281,0.612712,0.2536,0.00307371,0.564333,0.70712,0.387134,2.44083e-05,0.358813,0.100705,0.574252,0.493455,0.346636,0.457747,0.348802,0.476541,0.579645,0.119749,0.42505,0.254628,0.713293,0.479347,0.416962,0.0191073,0.378333,0.738545,0.264038,0.22798,0.102495,0.350933,0.000287714,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.0265924,0.325254,0.266651,0.187728,0.231754,1.27649e-05,0.283107,0.285648,0.0191181,0.391071,0.0433305,0.00344219,0.0316941,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.0651578,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.207281,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.0612213,0.332769,0.262022,0.274403,0.266687,0.00121508,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.0452813,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.0361085,0.0109327,0.302133,0.00207843,0.151361,0.279606,0.286696,0.150674,0.251128,0.246177,0.35674,0.35852,0.00707033,0.213257,0.287217,0.122782,0.00214888,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,5.4669e-06,0.0936726,0.000934607,0.132374,0.285122,0.22741,0.203996,0.000354663,0.00732664,0.264707,0.00331953
|tfbs_overrepresentation=0.191353,0.0774498,0.50138,0.0631091,0.257053,0.00122022,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.0323255,0.172742,0.107781,0.124486,0.0550418,0.0423226,0.268949,0.119094,0.0186717,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.000181498,0.157881,0.0480278,0.0503649,0.234372,0.145553,3.1982e-05,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.0412226,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.0083674,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.0437659,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.00199911,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.000877371,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.00252165,0.179282,0.202544,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.0687034,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.0901258,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.00179581,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.00108189,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.000188741,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.112868,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.114577,0.810881,0.603871,0.389734,0.668426,0.000670052,0.0719958,0.420045,0.00243927,0.332539,0.00863402,0.00385231,0.389374,0.00236126,0.414547,0.00499259,0.413223,0.00397825,7.85666e-06,0.34505,0.000118068,0.000756111,0.49089,2.95743e-05,0.702495,0.000195264,0.122191,0.234628,0.520726,0.143893,0.0172441,0.0434592,0.524104,0.132138,0.051755,0.751064,0.632838,9.33444e-08,0.460819,9.12019e-07,0.0601683,0.0073977,0.0703732,0.380582,0.012328,0.00185628,0.286293,0.00272999,0.708425,0.359128,0.0146894,0.0065023,0.368633,0.0463511,0.0292801,0.00630994,0.0116693,0.578349,0.00804842,3.29054e-07,0.00120723,0.714007,0.235444,0.804772,0.899283,0.279301,0.349116,0.0510948,0.239545,0.432689,0.640367,0.343881,0.377117,0.606382,0.617741,7.55866e-05,0.316925,0.356561,0.0112414,0.211506,0.0883859,0.0962508,0.238465,0.341199,0.301365,0.00127963,0.508325,0.0636247,0.000115715,0.656755,0.54723,0.280307,0.393583,0.212518,0.0596868,0.0984075,1.79547e-06,0.753513,0.332526,0.605423,0.0013522,0.109146,0.578951,0.365653,0.41035,0.784024,0.35234,0.180014,0.000127213,0.00530385,0.104649,0.25441,0.202782,0.307342,1.04473e-06,0.0124357,0.00657735,0.0171365,0.926442,0.419676,0.188259,0.189182,0.477589,0.0260996,0.00134091,0.198922,0.058245,0.198207,0.0616078,0.00109374,0.0615778,0.175552,0.129238,0.283924,0.370995,7.52097e-06,0.0194906,0.0135024,0.385297,0.00167285,0.00272527,1.00913e-06,0.360203,0.00825487,0.447838,0.289666,0.500627,0.513045,0.452694,2.53857e-07,0.845507,0.265037,0.629795,0.167853,0.53531,0.341771,0.106541,0.657528,0.00110716,0.184395,0.55524,7.35207e-05,0.206945,0.304719,0.00378814,0.296994,0.244339,0.117049,0.0786167,0.629381,0.0109535,0.433821,0.0211186,0.436806,0.00192277,0.499072,0.00283311,1.40193e-06,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.00833305,0.183047,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.0164151,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.111145,0.0660736,0.108971,0.0879235,0.00263193,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.00273651,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,3.02961e-07,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.0170294,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.00648069,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.0303627,0.302909,0.363016,0.100188,0.0269772,0.107653,0.235857,0.419621,0.0197215,0.184022,0.216557,0.00118257,0.116818,0.389792,0.0757944,0.0625685,0.124464,0.00856472,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.0705088,0.833813,0.758305,0.278645,0.00124796,0.155708,0.0336707,0.22995,0.00463504,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.960445,0.974549,0.265324,0.000372329,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.0385301,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.00306463,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.00283685,0.225961,0.124417,0.00840896,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.32805,0.21618,0.0323312,0.107021,0.238657,0.20272,1.39025e-05,0.0164195,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.724669,0.0478217,0.158752,0.170854,0.0575231,0.174063,0.514243,0.003653,0.54832,0.154964,0.296013,0.000760863,0.537932,0.459994,0.523209,0.00885937,0.25423,0.146971,0.45013,0.500698,0.135135,2.88626e-05,0.747471,0.529642,0.509113,0.483077,0.590496,0.603763,0.00126891,0.0778742,0.938109,0.934991,0.290703,0.017476,0.0413786,0.478691,0.360199,0.0153629,0.290133,0.253797,0.0111989,0.212703,0.201391,0.364079,0.680099,0.579886,0.104625,0.569409,0.0610883,0.545608,0.310552,0.865054,0.142433,0.829658,0.0698158,0.209437,0.55323,0.161672,0.598945,0.882403,0.00046932,0.871271,0.214786,0.150592,0.839946,0.0155453,0.261575,0.257956,0.264245,0.379063,0.0602936,0.16985,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.0106153,0.025886,0.39549,0.234254,0.357409,0.599068,0.721266,0.50338,0.620526,0.404625,0.759068,0.106633,0.715362,0.479581,0.62689,0.635682,0.274432,0.000400972,0.512545,0.162017,0.0515768,0.527709,0.684899,0.263302,2.12448e-05,0.180735,0.000163899,0.216102,0.254659,0.109605,0.00184531,3.23226e-08,0.226491,0.417131,0.463987,0.000560419,0.503881,0.454761,0.0202528,0.483658,0.122467,0.301581,0.261657,0.346776,0.466529,0.545655,0.00291646,0.349112,0.741477,0.385425,0.307816,0.461541,0.386339,0.382854,0.598787,0.478745,0.24434,0.319747,0.475047,0.557967,4.02686e-10,0.282281,0.612712,0.2536,0.00307371,0.564333,0.70712,0.387134,2.44083e-05,0.358813,0.100705,0.574252,0.493455,0.346636,0.457747,0.348802,0.476541,0.579645,0.119749,0.42505,0.254628,0.713293,0.479347,0.416962,0.0191073,0.378333,0.738545,0.264038,0.22798,0.102495,0.350933,0.000287714,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.0265924,0.325254,0.266651,0.187728,0.231754,1.27649e-05,0.283107,0.285648,0.0191181,0.391071,0.0433305,0.00344219,0.0316941,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.0651578,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.207281,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.0612213,0.332769,0.262022,0.274403,0.266687,0.00121508,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.0452813,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.0361085,0.0109327,0.302133,0.00207843,0.151361,0.279606,0.286696,0.150674,0.251128,0.246177,0.35674,0.35852,0.00707033,0.213257,0.287217,0.122782,0.00214888,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,5.4669e-06,0.0936726,0.000934607,0.132374,0.285122,0.22741,0.203996,0.000354663,0.00732664,0.264707,0.00331953
}}
}}

Revision as of 13:56, 19 October 2012


Full id: C2378_Hepatocyte_skeletal_heart_liver_medulla_colon_pancreas



Phase1 CAGE Peaks

Hg19::chr16:56717902..56717913,+p@chr16:56717902..56717913
+
Hg19::chr16:56717928..56717945,+p@chr16:56717928..56717945
+
Hg19::chr16:56717951..56717970,+p@chr16:56717951..56717970
+
Hg19::chr16:56717983..56717998,+p@chr16:56717983..56717998
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
endodermal cell1.73e-0958
endo-epithelial cell2.79e-0942
respiratory epithelial cell4.56e-0713
Uber Anatomy
Ontology termp-valuen
adult organism1.05e-21114
organ system subdivision1.23e-14223
neural tube7.39e-1256
neural rod7.39e-1256
future spinal cord7.39e-1256
neural keel7.39e-1256
endoderm-derived structure9.08e-11160
endoderm9.08e-11160
presumptive endoderm9.08e-11160
regional part of nervous system2.36e-1053
regional part of brain2.36e-1053
digestive system1.24e-09145
digestive tract1.24e-09145
primitive gut1.24e-09145
neurectoderm2.12e-0986
subdivision of digestive tract2.93e-09118
immaterial anatomical entity3.82e-09117
neural plate6.22e-0982
presumptive neural plate6.22e-0982
anatomical space8.42e-0995
central nervous system1.18e-0881
respiratory system1.23e-0874
foregut1.39e-0887
brain3.46e-0868
future brain3.46e-0868
regional part of forebrain5.73e-0841
forebrain5.73e-0841
anterior neural tube5.73e-0841
future forebrain5.73e-0841
nervous system9.02e-0889
multi-tissue structure9.06e-08342
brain grey matter1.39e-0734
gray matter1.39e-0734
respiratory tract3.72e-0754
ecto-epithelium4.52e-07104


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CTCF#1066445.360256373075030.001211145381643620.00816754778288102
MAFK#7975320.32554985337240.0001953213688931110.00235067624404559



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.