MacroAPE 1083:12-CSCCYTTTWA: Difference between revisions
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(Created page with "{{Macroape_1083
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1;0.245667!10465-106H6;0.719041!10691-109F7;0.602574!10843-111E6;0.00403688!10844-111E7;0.539942!11747-123G1;0.177157!11748-123G2;0.406124!11749-123G3;0.755207!11750-123G4;0.431517!11751-123G5;0.82962!11840-124H4;0.520116!11752-123G6;0.267603!11753-123G7;0.589346!11754-123G8;0.307525!11755-123G9;0.837995!11756-123H1;0.585762!11833-124G6;0.784481!11760-123H5;0.23768!11836-124G9;0.286644!11758-123H3;0.641008!11835-124G8;0.653412!11762-123H7;0.126502!11838-124H2;0.193799!11757-123H2;0.12452!11759-123H4;0.163063!11761-123H6;0.81644!11842-124H6;0.266092!11837-124H1;0.314882!10568-108B1;0.219522!13230-141I8;0.331147!13231-141I9;0.546158!10696-109G3;0.248962!10493-107B7;0.0630026!10494-107B8;0.365513!10850-111F4;0.703987!10851-111F5;0.0740152!10852-111F6;0.635085!10853-111F7;0.39591!10854-111F8;0.416096!10855-111F9;0.591285!10856-111G1;0.20172!10847-111F1;0.105756!10846-111E9;0.933002!10848-111F2;0.879715!10845-111E8;0.299672!10857-111G2;0.504246!10858-111G3;0.474558!10156-103A3;0.63191!11901-125F2;0.805185!11902-125F3;0.0197822!11903-125F4;0.0381285!10689-109F5;0.00975562!10648-109A9;0.382054!10784-110H1;0.14373!10744-110C6;0.125882!10772-110F7;0.0113203!10474-106I6;0.00595398!10600-108E6;8.38223e-08!10684-109E9;0.0263895!12226-129F3;0.149856!12227-129F4;0.00955611!10508-107D4;0.00846878!10539-107G8;0.459915!10607-108F4;0.541537!10555-107I6;0.857605!10774-110F9;0.921016!10637-108I7;0.626853!10663-109C6;0.995739!10728-110A8;0.200497!10729-110A9;0.719748!10430-106D7;0.168027!10730-110B1;0.00091143!10813-111B3;0.222709!10812-111B2;0.145205!10037-101F1;0.486033!10172-103C1;0.835437!10163-103B1;0.327061!10076-102A4;0.951762!10073-102A1;0.891285!10036-101E9;0.965201!10195-103E6;0.800253!10277-104E7;0.733118!10434-106E2;0.179744!10550-107I1;0.716667!10545-107H5;0.485704!10544-107H4;0.994313!10704-109H2;0.992273!10510-107D6;0.583687!10558-107I9;0.0114697!10020-101D2;0.293547!10732-110B3;0.133495!10049-101G4;0.0664511!10698-109G5;0.250218!10437-106E5;0.425661!10417-106C3;0.82996!10035-101E8;0.0127125!10171-103B9;0.734744!10157-103A4;0.522511!10034-101E7;0.7594!10072-101I9;0.828344!10199-103F1;0.889682!10200-103F2;0.811717!10697-109G4;0.300137!10723-110A3;0.256911!10179-103C8;0.111489!10160-103A7;0.833257!10180-103C9;0.291056!10162-103A9;0.498316!10021-101D3;0.182761!10840-111E3;0.115801!10706-109H4;6.059e-06!10033-101E6;0.345278!10032-101E5;0.991419!10490-107B4;0.961!10439-106E7;0.689793!10022-101D4;0.482172!10176-103C5;0.310755!10469-106I1;0.471076!10067-101I4;0.0473476!10411-106B6;0.0979675!10471-106I3;0.874534!10030-101E3;0.114399!10475-106I7;0.145979!10787-110H4;0.279327!10477-106I9;0.258857!10695-109G2;0.360859!11771-123I7;0.0049876!11772-123I8;0.0177621!11773-123I9;0.0689865!10093-102C3;0.000454785!10442-106F1;0.587654!10442-106F1;0.0109855!10201-103F3;0.0181527!10639-108I9;0.281459!11843-124H7;0.255199!11841-124H5;0.0164723!10693-109F9;0.831677!10436-106E4;0.258921!10483-107A6;0.32439!10282-104F3;0.758522!10023-101D5;0.846223!10066-101I3;0.444141!10065-101I2;0.165936!10800-110I8;0.235551!10610-108F7;0.858026!10841-111E4;0.565632!10541-107H1;0.633446!10842-111E5;0.165151!10562-108A4;0.745774!10024-101D6;0.535137!10064-101I1;0.211582!10609-108F6;0.0522814!10048-101G3;0.207205!10781-110G7;0.17791!10181-103D1;0.970691!10159-103A6;0.236558!10056-101H2;0.862684!10737-110B8;0.0506356!10025-101D7;0.211715!10044-101F8;0.774708!10424-106D1;0.0430567!10463-106H4;1.60329e-06!10616-108G4;0.985753!10486-107A9;0.694165!10062-101H8;0.0656452!10202-103F4;0.0738981!10158-103A5;0.982628!10441-106E9;0.81135!10031-101E4;0.89684!10063-101H9;0.747976!10063-101H9;0.519548!11763-123H8;0.361013!11765-123I1;0.353905!11768-123I4;0.163509!10807-111A6;0.592075!10790-110H7;0.736334!10798-110I6;0.772201!10786-110H3;0.372136!10591-108D6;0.05124!10593-108D8;0.586686!10590-108D5;0.868828!10026-101D8;0.808959!10096-102C6;0.134103!10168-103B6;0.368948!10154-103A1;0.877494!10209-103G2;0.992433!10061-101H7;0.17509!10027-101D9;0.310705!10043-101F7;0.0179939!10783-110G9;0.525723!10028-101E1;0.550305!10060-101H6;0.669733!10203-103F5;0.569841!10059-101H5;0.131866!10047-101G2;0.0450102!10029-101E2;0.549158!10058-101H4;0.0618697!10418-106C4;0.055235!10492-107B6;0.0795806!10694-109G1;0.299509!10797-110I5;0.0100108!10057-101H3;0.422766!10100-102D1;0.0387312!10055-101H1;0.52881!10204-103F6;0.183986!10191-103E2;0.052241!10563-108A5;0.356463 | ||
|name=12-CSCCYTTTWA,CNhs11049,BestGuess:GTF2A1,2.p2.SwissRegulon.nucfreq(0.675210679139049),T:631.0(25.69%),B:7523.0(16.72%),P:1e-28 | |name=12-CSCCYTTTWA,CNhs11049,BestGuess:GTF2A1,2.p2.SwissRegulon.nucfreq(0.675210679139049),T:631.0(25.69%),B:7523.0(16.72%),P:1e-28 | ||
|tomtom_result=TBP#MA0108.2;2;1.73581e-06;0.000826246;0.000826246;10;CGCCCTTTAA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;2;1.73581e-06;0.000826246;0.000826246;10;CGCCCTTTAA;CCCCGCCTTTTATAC;-!SMP1#MA0383.1;0;0.0025945;1.23498;0.823322;10;CGCCCTTTAA;TGCTAATTTAATTATAGGTAA;-!NHP6B#MA0346.1;0;0.00601063;2.86106;1;10;CGCCCTTTAA;TCATATTATATATAAATAAA;-!GIS1#MA0306.1;-1;0.00997195;4.74665;1;9;CGCCCTTTAA;ACCCCTAAA;+!AG#MA0005.1;-1;0.0125821;5.98907;1;9;CGCCCTTTAA;ACCAAATTTGG;-!MCM1#MA0331.1;-2;0.0126441;6.01858;1;8;CGCCCTTTAA;CCCAATTAGGAA;+!HAP4#MA0315.1;0;0.0131712;6.26948;1;10;CGCCCTTTAA;TCGCCTCTGATTGGT;-!YER130C#MA0423.1;0;0.0155571;7.40519;1;9;CGCCCTTTAA;ACCCCTATT;+!Klf4#MA0039.1;1;0.0178658;8.50412;1;9;CGCCCTTTAA;CCTTCCTTTA;-!YAP6#MA0418.1;-2;0.0196788;9.36709;1;8;CGCCCTTTAA;GTCGCTTACGTAATCAGACC;- | |||
}} | }} |
Latest revision as of 13:33, 7 September 2012
Full Name: 12-CSCCYTTTWA,CNhs11049,BestGuess:GTF2A1,2.p2.SwissRegulon.nucfreq(0.675210679139049),T:631.0(25.69%),B:7523.0(16.72%),P:1e-28
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
TBP#MA0108.2 | 2 | 1.73581e-06 | 0.000826246 | 0.000826246 | 10 | CGCCCTTTAA | CCCCGCCTTTTATAC | - |
TBP#MA0108.2 | 2 | 1.73581e-06 | 0.000826246 | 0.000826246 | 10 | CGCCCTTTAA | CCCCGCCTTTTATAC | - |
SMP1#MA0383.1 | 0 | 0.0025945 | 1.23498 | 0.823322 | 10 | CGCCCTTTAA | TGCTAATTTAATTATAGGTAA | - |
NHP6B#MA0346.1 | 0 | 0.00601063 | 2.86106 | 1 | 10 | CGCCCTTTAA | TCATATTATATATAAATAAA | - |
GIS1#MA0306.1 | -1 | 0.00997195 | 4.74665 | 1 | 9 | CGCCCTTTAA | ACCCCTAAA | + |
AG#MA0005.1 | -1 | 0.0125821 | 5.98907 | 1 | 9 | CGCCCTTTAA | ACCAAATTTGG | - |
MCM1#MA0331.1 | -2 | 0.0126441 | 6.01858 | 1 | 8 | CGCCCTTTAA | CCCAATTAGGAA | + |
HAP4#MA0315.1 | 0 | 0.0131712 | 6.26948 | 1 | 10 | CGCCCTTTAA | TCGCCTCTGATTGGT | - |
YER130C#MA0423.1 | 0 | 0.0155571 | 7.40519 | 1 | 9 | CGCCCTTTAA | ACCCCTATT | + |
Klf4#MA0039.1 | 1 | 0.0178658 | 8.50412 | 1 | 9 | CGCCCTTTAA | CCTTCCTTTA | - |
YAP6#MA0418.1 | -2 | 0.0196788 | 9.36709 | 1 | 8 | CGCCCTTTAA | GTCGCTTACGTAATCAGACC | - |