MacroAPE 1083:12-CSCCYTTTWA
From FANTOM5_SSTAR
Full Name: 12-CSCCYTTTWA,CNhs11049,BestGuess:GTF2A1,2.p2.SwissRegulon.nucfreq(0.675210679139049),T:631.0(25.69%),B:7523.0(16.72%),P:1e-28
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
|---|---|---|---|---|---|---|---|---|
| TBP#MA0108.2 | 2 | 1.73581e-06 | 0.000826246 | 0.000826246 | 10 | CGCCCTTTAA | CCCCGCCTTTTATAC | - |
| TBP#MA0108.2 | 2 | 1.73581e-06 | 0.000826246 | 0.000826246 | 10 | CGCCCTTTAA | CCCCGCCTTTTATAC | - |
| SMP1#MA0383.1 | 0 | 0.0025945 | 1.23498 | 0.823322 | 10 | CGCCCTTTAA | TGCTAATTTAATTATAGGTAA | - |
| NHP6B#MA0346.1 | 0 | 0.00601063 | 2.86106 | 1 | 10 | CGCCCTTTAA | TCATATTATATATAAATAAA | - |
| GIS1#MA0306.1 | -1 | 0.00997195 | 4.74665 | 1 | 9 | CGCCCTTTAA | ACCCCTAAA | + |
| AG#MA0005.1 | -1 | 0.0125821 | 5.98907 | 1 | 9 | CGCCCTTTAA | ACCAAATTTGG | - |
| MCM1#MA0331.1 | -2 | 0.0126441 | 6.01858 | 1 | 8 | CGCCCTTTAA | CCCAATTAGGAA | + |
| HAP4#MA0315.1 | 0 | 0.0131712 | 6.26948 | 1 | 10 | CGCCCTTTAA | TCGCCTCTGATTGGT | - |
| YER130C#MA0423.1 | 0 | 0.0155571 | 7.40519 | 1 | 9 | CGCCCTTTAA | ACCCCTATT | + |
| Klf4#MA0039.1 | 1 | 0.0178658 | 8.50412 | 1 | 9 | CGCCCTTTAA | CCTTCCTTTA | - |
| YAP6#MA0418.1 | -2 | 0.0196788 | 9.36709 | 1 | 8 | CGCCCTTTAA | GTCGCTTACGTAATCAGACC | - |
