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MacroAPE 1083:Motif GGAGCN: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;1636;0!02;0;0;1636;0!03;1636;0;0;0!04;0;0;1636;0!05;0;1636;0;0!06;0;0;0;1636 |macroape_1083_sample_pvalues=11376-118A8;0.368448!11327-...")
 
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;0.422543!10828-111C9;0.481166!10788-110H5;0.360225!10792-110H9;0.441002!10765-110E9;0.467345!10829-111D1;0.439416!10830-111D2;0.2606!10831-111D3;0.71618!10832-111D4;0.322125!10833-111D5;0.470649!10764-110E8;0.347002!10770-110F5;0.204751!10399-106A3;0.478787!10400-106A4;0.223469!10405-106A9;0.242927!10834-111D6;0.186727!10835-111D7;0.382939!10836-111D8;0.394437!10837-111D9;0.221742!10699-109G6;0.221019!10802-111A1;0.549605!10796-110I4;0.200024!10010-101C1;0.44484!10810-111A9;0.359898!10421-106C7;0.555552!10708-109H6;0.259741!12235-129G3;0.61314!12236-129G4;0.972163!12237-129G5;0.610297!10167-103B5;0.525341!10151-102I7;0.124517!10428-106D5;0.122311!10795-110I3;0.973958!10805-111A4;0.260877!10052-101G7;0.860783!10189-103D9;0.386842!10589-108D4;0.497907!10425-106D2;0.744425!10427-106D4;0.0784088!10702-109G9;0.0542232!10432-106D9;0.622205!10496-107C1;0.437664!10718-109I7;0.634838!10011-101C2;0.178126!10053-101G8;0.357221!10686-109F2;0.397653!10084-102B3;0.858539!10012-101C3;0.123288!10085-102B4;0.154772!10482-107A5;0.0192526!10419-106C5;0.724418!10080-102A8;0.718554!10760-110E4;0.638618!10709-109H7;0.485109!10710-109H8;0.571886!10703-109H1;0.475376!10719-109I8;0.865!10642-109A3;0.457975!10177-103C6;0.28456!10164-103B2;0.222926!10173-103C2;0.145351!10166-103B4;0.148595!10083-102B2;0.16263!10188-103D8;0.19138!10552-107I3;0.123079!10553-107I4;0.434175!10013-101C4;0.814402!10536-107G5;0.320067!10618-108G6;0.460763!10423-106C9;0.965772!10785-110H2;0.107636!12238-129G6;0.812436!12239-129G7;0.77435!12240-129G8;0.419302!10416-106C2;0.462099!10801-110I9;0.460502!10766-110F1;0.636959!10824-111C5;0.150558!10825-111C6;0.215266!10826-111C7;0.17302!10454-106G4;0.159121!10409-106B4;0.227404!10638-108I8;0.258233!10636-108I6;0.294154!10513-107D9;0.370261!10420-106C6;0.660295!10082-102B1;0.464298!10014-101C5;0.88864!10070-101I7;0.580842!10452-106G2;0.475752!10453-106G3;0.137049!10449-106F8;0.108285!10042-101F6;0.109493!10069-101I6;0.154592!10193-103E4;0.254855!10631-108I1;0.149826!10438-106E6;0.141815!10488-107B2;0.55702!10196-103E7;0.333497!10071-101I8;0.352779!10071-101I8;0.181369!10041-101F5;0.0145467!10451-106G1;0.0699616!10450-106F9;0.418466!10604-108F1;0.56864!10605-108F2;0.847022!10606-108F3;0.839273!10603-108E9;0.861422!10497-107C2;0.619526!10448-106F7;0.458475!10643-109A4;0.685149!10426-106D3;0.298578!10431-106D8;0.239729!10197-103E8;0.291263!10443-106F2;0.426452!10815-111B5;0.232298!10816-111B6;0.385875!10817-111B7;0.44818!10015-101C6;0.395906!10410-106B5;0.46532!10054-101G9;0.359212!10758-110E2;0.0918107!10711-109H9;0.964587!10040-101F4;0.541955!10470-106I2;0.134125!10415-106C1;0.55547!10198-103E9;0.305848!10614-108G2;0.549943!10612-108F9;0.443801!10549-107H9;0.301196!10615-108G3;0.427725!10487-107B1;0.477638!10433-106E1;0.381697!10688-109F4;0.238961!10444-106F3;0.507387!10444-106F3;0.503627!10485-107A8;0.618782!10413-106B8;0.342965!10175-103C4;0.708911!10161-103A8;0.217152!12131-128D7;0.243241!10624-108H3;0.396328!10712-109I1;0.0413653!10205-103F7;0.0227029!10206-103F8;0.479335!10207-103F9;0.27192!10050-101G5;0.544129!10051-101G6;0.630609!10016-101C7;0.627675!10046-101G1;0.680501!10778-110G4;0.42798!10633-108I3;0.623383!10818-111B8;0.570463!10819-111B9;0.897173!10820-111C1;0.816344!10484-107A7;0.841388!10808-111A7;0.745522!10169-103B7;0.227454!10153-102I9;0.0475076!13425-144D5;0.0882611!13433-144E4;0.240454!13437-144E8;0.23458!11904-125F5;0.263238!11905-125F6;0.30918!10039-101F3;0.347556!10791-110H8;0.123052!10017-101C8;0.979089!10045-101F9;0.568885!10509-107D5;0.372924!10839-111E2;0.913146!10692-109F8;0.129204!10079-102A7;0.757371!10078-102A6;0.52045!10721-110A1;0.601286!10569-108B2;0.598521!10570-108B3;0.254161!10571-108B4;0.2646!10647-109A8;0.326818!10752-110D5;0.557209!10782-110G8;0.0391582!10726-110A6;0.205138!10018-101C9;0.177627!10086-102B5;0.771011!10182-103D2;0.394651!10165-103B3;0.243868!10499-107C4;0.206677!10408-106B3;0.309082!10019-101D1;0.363272!10068-101I5;0.747688!10075-102A3;0.465825!10077-102A5;0.460748!10727-110A7;0.320026!10775-110G1;0.221711!10412-106B7;0.13128!12231-129F8;0.884334!12232-129F9;0.544773!12233-129G1;0.609448!12234-129G2;0.790731!10414-106B9;0.656512!10170-103B8;0.216119!10183-103D3;0.144774!10150-102I6;0.135083!10174-103C3;0.159022!10155-103A2;0.271154!10038-101F2;0.257411!10838-111E1;0.213455!10759-110E3;0.548505!10514-107E1;0.956172!10465-106H6;0.554283!10691-109F7;0.371583!10843-111E6;0.256315!10844-111E7;0.725911!11747-123G1;0.909898!11748-123G2;0.689379!11749-123G3;0.935226!11750-123G4;0.571249!11751-123G5;0.786438!11840-124H4;0.769291!11752-123G6;0.588057!11753-123G7;0.663772!11754-123G8;0.94448!11755-123G9;0.646767!11756-123H1;0.772317!11833-124G6;0.747611!11760-123H5;0.612645!11836-124G9;0.784492!11758-123H3;0.990909!11835-124G8;0.957099!11762-123H7;0.915721!11838-124H2;0.664464!11757-123H2;0.904323!11759-123H4;0.989562!11761-123H6;0.983294!11842-124H6;0.634253!11837-124H1;0.988289!10568-108B1;0.918062!13230-141I8;0.420241!13231-141I9;0.403688!10696-109G3;0.367413!10493-107B7;0.152402!10494-107B8;0.0356325!10850-111F4;0.332608!10851-111F5;0.0646347!10852-111F6;0.100923!10853-111F7;0.320492!10854-111F8;0.166854!10855-111F9;0.547205!10856-111G1;0.448386!10847-111F1;0.14088!10846-111E9;0.364976!10848-111F2;0.0996549!10845-111E8;0.85538!10857-111G2;0.453685!10858-111G3;0.088153!10156-103A3;0.479901!11901-125F2;0.151971!11902-125F3;0.26084!11903-125F4;0.348141!10689-109F5;0.358726!10648-109A9;0.934428!10784-110H1;0.796702!10744-110C6;0.29826!10772-110F7;0.194939!10474-106I6;0.262879!10600-108E6;0.0452598!10684-109E9;0.426885!12226-129F3;0.657555!12227-129F4;0.283266!10508-107D4;0.667678!10539-107G8;0.250933!10607-108F4;0.244893!10555-107I6;0.836319!10774-110F9;0.26541!10637-108I7;0.881703!10663-109C6;0.418172!10728-110A8;0.73478!10729-110A9;0.510468!10430-106D7;0.400385!10730-110B1;0.522327!10813-111B3;0.777263!10812-111B2;0.491134!10037-101F1;0.555489!10172-103C1;0.130705!10163-103B1;0.161554!10076-102A4;0.199931!10073-102A1;0.121042!10036-101E9;0.00527767!10195-103E6;0.151601!10277-104E7;0.10165!10434-106E2;0.224962!10550-107I1;0.359569!10545-107H5;0.170944!10544-107H4;0.43132!10704-109H2;0.228047!10510-107D6;0.741737!10558-107I9;0.904963!10020-101D2;0.42707!10732-110B3;0.149613!10049-101G4;0.907616!10698-109G5;0.387502!10437-106E5;0.456397!10417-106C3;0.417767!10035-101E8;0.351711!10171-103B9;0.136745!10157-103A4;0.144344!10034-101E7;0.157894!10072-101I9;0.136392!10199-103F1;0.00885908!10200-103F2;0.87969!10697-109G4;0.406118!10723-110A3;0.322525!10179-103C8;0.500266!10160-103A7;0.0104166!10180-103C9;0.0033816!10162-103A9;0.39519!10021-101D3;0.228746!10840-111E3;0.272796!10706-109H4;0.0491495!10033-101E6;0.99227!10032-101E5;0.202926!10490-107B4;0.153601!10439-106E7;0.162168!10022-101D4;0.543317!10176-103C5;0.335471!10469-106I1;0.113189!10067-101I4;0.509609!10411-106B6;0.0849571!10471-106I3;0.654235!10030-101E3;0.480616!10475-106I7;0.0647353!10787-110H4;0.950544!10477-106I9;0.598066!10695-109G2;0.494115!11771-123I7;0.290655!11772-123I8;0.132899!11773-123I9;0.975749!10093-102C3;0.83314!10442-106F1;0.751717!10442-106F1;0.285194!10201-103F3;0.316432!10639-108I9;0.28266!11843-124H7;0.357815!11841-124H5;0.187876!10693-109F9;0.391164!10436-106E4;0.535761!10483-107A6;0.435794!10282-104F3;0.472104!10023-101D5;0.607259!10066-101I3;0.416387!10065-101I2;0.0586434!10800-110I8;0.0864813!10610-108F7;0.965749!10841-111E4;0.378613!10541-107H1;0.418818!10842-111E5;0.315376!10562-108A4;0.804719!10024-101D6;0.957301!10064-101I1;0.670138!10609-108F6;0.311529!10048-101G3;0.792801!10781-110G7;0.243254!10181-103D1;0.915207!10159-103A6;0.19232!10056-101H2;0.349156!10737-110B8;0.130593!10025-101D7;0.707992!10044-101F8;0.362753!10424-106D1;0.358326!10463-106H4;0.23564!10616-108G4;0.425634!10486-107A9;0.0632321!10062-101H8;0.471101!10202-103F4;0.479975!10158-103A5;0.637436!10441-106E9;0.22463!10031-101E4;0.666185!10063-101H9;0.141268!10063-101H9;0.00616259!11763-123H8;0.292639!11765-123I1;0.478847!11768-123I4;0.326654!10807-111A6;0.578594!10790-110H7;0.75966!10798-110I6;0.330097!10786-110H3;0.287325!10591-108D6;0.111086!10593-108D8;0.121017!10590-108D5;0.183725!10026-101D8;0.142554!10096-102C6;0.210742!10168-103B6;0.267268!10154-103A1;0.178077!10209-103G2;0.181731!10061-101H7;0.53202!10027-101D9;0.209077!10043-101F7;0.380145!10783-110G9;0.263021!10028-101E1;0.318466!10060-101H6;0.688696!10203-103F5;0.291913!10059-101H5;0.412754!10047-101G2;0.228763!10029-101E2;0.688796!10058-101H4;0.786545!10418-106C4;0.278198!10492-107B6;0.490977!10694-109G1;0.121483!10797-110I5;0.436074!10057-101H3;0.86006!10100-102D1;0.20499!10055-101H1;0.222351!10204-103F6;0.130141!10191-103E2;0.311264!10563-108A5;0.28078
|name=motif_GGAGCN
|name=motif_GGAGCN
|tomtom_result=PDR8#MA0354.1;2;0.00604158;2.87579;1;6;GGAGCT;GCGGAGAT;+!REST#MA0138.2;0;0.00625945;2.9795;1;6;GGAGCT;GGCGCTGTCCATGGTGCTGAA;-!YLR278C#MA0430.1;2;0.00698758;3.32609;1;6;GGAGCT;CCGGAGTT;+!HAP1#MA0312.1;1;0.00763312;3.63337;1;6;GGAGCT;CGGAGATA;+!GSM1#MA0308.1;8;0.00801776;3.81645;1;6;GGAGCT;TATACTCCGGAGTTTTTTAAT;-!YNR063W#MA0432.1;2;0.00901814;4.29263;1;6;GGAGCT;TCGGAGAT;+!SNT2#MA0384.1;1;0.00974203;4.63721;1;6;GGAGCT;CGGCGCTACCA;-!NHLH1#MA0048.1;2;0.0133754;6.36668;1;6;GGAGCT;ACGCAGCTGCGC;-!OAF1#MA0348.1;2;0.0147136;7.00367;1;6;GGAGCT;TCGGAGATA;+!YJL103C#MA0427.1;5;0.0164669;7.83824;1;6;GGAGCT;TCTCCGGAGCT;-!STB5#MA0392.1;1;0.0167159;7.95675;1;6;GGAGCT;CGGTGTTA;+!REST#MA0138.2;11;0.0197407;9.39657;1;6;GGAGCT;GCGCTGTCCATGGTGCTGA;+!YDR520C#MA0422.1;2;0.0201282;9.58102;1;6;GGAGCT;CCGGAGATAA;+
}}
}}

Latest revision as of 11:52, 7 September 2012

Full Name: motif_GGAGCN

Motif matrix
POACGT
010016360
020016360
031636000
040016360
050163600
060001636

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PDR8#MA0354.120.006041582.8757916GGAGCTGCGGAGAT+
REST#MA0138.200.006259452.979516GGAGCTGGCGCTGTCCATGGTGCTGAA-
YLR278C#MA0430.120.006987583.3260916GGAGCTCCGGAGTT+
HAP1#MA0312.110.007633123.6333716GGAGCTCGGAGATA+
GSM1#MA0308.180.008017763.8164516GGAGCTTATACTCCGGAGTTTTTTAAT-
YNR063W#MA0432.120.009018144.2926316GGAGCTTCGGAGAT+
SNT2#MA0384.110.009742034.6372116GGAGCTCGGCGCTACCA-
NHLH1#MA0048.120.01337546.3666816GGAGCTACGCAGCTGCGC-
OAF1#MA0348.120.01471367.0036716GGAGCTTCGGAGATA+
YJL103C#MA0427.150.01646697.8382416GGAGCTTCTCCGGAGCT-
STB5#MA0392.110.01671597.9567516GGAGCTCGGTGTTA+
REST#MA0138.2110.01974079.3965716GGAGCTGCGCTGTCCATGGTGCTGA+
YDR520C#MA0422.120.02012829.5810216GGAGCTCCGGAGATAA+
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