FFCP PHASE1:Hg19::chr15:31393917..31393936,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000147!5.41e-38!14;CL:0000148!2.42e-26!10;CL:0000541!2.42e-26!10;CL:0000710!7.12e-18!20;CL:0000325!1.84e-15!39;CL:0000075!5.15e-15!27;CL:0000149!4.32e-14!4;CL:0002077!1.15e-11!33;CL:0002567!3.01e-11!3;CL:0002586!6.84e-11!3 | |ontology_enrichment_celltype=CL:0000147!5.41e-38!14;CL:0000148!2.42e-26!10;CL:0000541!2.42e-26!10;CL:0000710!7.12e-18!20;CL:0000325!1.84e-15!39;CL:0000075!5.15e-15!27;CL:0000149!4.32e-14!4;CL:0002077!1.15e-11!33;CL:0002567!3.01e-11!3;CL:0002586!6.84e-11!3 | ||
|ontology_enrichment_celltype_v019=CL:0000147;1.40e-68;14!CL:0000148;1.46e-51;10!CL:0000149;1.20e-32;4!CL:0002567;1.45e-25;3!CL:0000710;2.68e-25;20!CL:0002586;1.07e-24;3!CL:0000075;1.80e-18;27!CL:0002077;6.38e-13;34!CL:0002566;8.67e-10;1!CL:0000453;3.91e-07;5 | |ontology_enrichment_celltype_v019=CL:0000147;1.40e-68;14!CL:0000148;1.46e-51;10!CL:0000149;1.20e-32;4!CL:0002567;1.45e-25;3!CL:0000710;2.68e-25;20!CL:0002586;1.07e-24;3!CL:0000075;1.80e-18;27!CL:0002077;6.38e-13;34!CL:0002566;8.67e-10;1!CL:0000453;3.91e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.65e-68,14;CL:0000148,1.67e-51,10;CL:0000541,1.67e-51,10;CL:0000149,1.20e-32,4;CL:0002567,1.45e-25,3;CL:0000710,2.86e-25,20;CL:0002586,1.12e-24,3;CL:0000075,1.88e-18,27;CL:0002077,1.96e-14,34;CL:0000333,3.47e-11,41;CL:0002566,8.68e-10,1;CL:0000133,1.46e-07,59;CL:0000453,3.14e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.09e-11;3!UBERON:0005425;4.15e-09;1!UBERON:0004874;4.15e-09;1 | |ontology_enrichment_development_v019=UBERON:0003056;1.09e-11;3!UBERON:0005425;4.15e-09;1!UBERON:0004874;4.15e-09;1 | ||
|ontology_enrichment_disease=DOID:1909!7.14e-08!2 | |ontology_enrichment_disease=DOID:1909!7.14e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;3.52e-17;2 | |ontology_enrichment_disease_v019=DOID:1909;3.52e-17;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,3.38e-17,2 | |||
|ontology_enrichment_uberon=UBERON:0003075!1.23e-31!86;UBERON:0007284!1.23e-31!86;UBERON:0002346!7.49e-30!90;UBERON:0001049!3.86e-28!57;UBERON:0005068!3.86e-28!57;UBERON:0006241!3.86e-28!57;UBERON:0007135!3.86e-28!57;UBERON:0005743!2.34e-23!86;UBERON:0000073!3.32e-22!94;UBERON:0001016!3.32e-22!94;UBERON:0003056!7.92e-22!61;UBERON:0002616!2.99e-20!59;UBERON:0003076!1.05e-18!15;UBERON:0003057!1.05e-18!15;UBERON:0004121!2.06e-18!169;UBERON:0002020!7.62e-18!34;UBERON:0003528!7.62e-18!34;UBERON:0000924!9.08e-18!173;UBERON:0006601!9.08e-18!173;UBERON:0001017!2.42e-17!82;UBERON:0007023!4.27e-17!115;UBERON:0000033!1.94e-16!123;UBERON:0000955!3.29e-16!69;UBERON:0006238!3.29e-16!69;UBERON:0001893!1.81e-15!34;UBERON:0000153!2.55e-15!129;UBERON:0007811!2.55e-15!129;UBERON:0002308!2.56e-15!9;UBERON:0000125!2.56e-15!9;UBERON:0001869!2.64e-14!32;UBERON:0002780!4.29e-14!41;UBERON:0001890!4.29e-14!41;UBERON:0006240!4.29e-14!41;UBERON:0004732!6.18e-14!13;UBERON:0002791!8.00e-14!33;UBERON:0003080!1.12e-13!42;UBERON:0002104!2.14e-13!21;UBERON:0002298!2.55e-13!8;UBERON:0007625!3.52e-13!11;UBERON:0004733!1.41e-11!12;UBERON:0002028!1.41e-11!12;UBERON:0007277!1.41e-11!12;UBERON:0001032!1.87e-11!24;UBERON:0004456!1.87e-11!24;UBERON:0000970!2.07e-11!20;UBERON:0000966!3.04e-11!5;UBERON:0005388!3.04e-11!5;UBERON:0001802!3.04e-11!5;UBERON:0001781!6.84e-11!3;UBERON:0001782!6.84e-11!3;UBERON:0005424!6.84e-11!3;UBERON:0009663!2.47e-10!7;UBERON:0002240!2.98e-10!3;UBERON:0001872!5.17e-10!5;UBERON:0000988!5.74e-10!3;UBERON:0006331!7.81e-10!3;UBERON:0000020!1.08e-09!23;UBERON:0000019!1.79e-09!19;UBERON:0000047!1.79e-09!19;UBERON:0004088!1.79e-09!19;UBERON:0003072!1.79e-09!19;UBERON:0003071!1.79e-09!19;UBERON:0004128!1.79e-09!19;UBERON:0002619!6.41e-09!22;UBERON:0001456!1.94e-08!21;UBERON:0002680!2.40e-08!9;UBERON:0001895!2.40e-08!9;UBERON:0010092!2.40e-08!9;UBERON:0000064!3.29e-08!219;UBERON:0002420!5.68e-08!9;UBERON:0007245!5.68e-08!9;UBERON:0010009!5.68e-08!9;UBERON:0010011!5.68e-08!9;UBERON:0000454!5.68e-08!9;UBERON:0001950!6.52e-08!20;UBERON:0000956!1.05e-07!25;UBERON:0000203!1.05e-07!25;UBERON:0000488!3.91e-07!4;UBERON:0002148!4.28e-07!2;UBERON:0009662!4.28e-07!2;UBERON:0000369!5.55e-07!4;UBERON:0002435!5.55e-07!4;UBERON:0000204!5.55e-07!4;UBERON:0010082!5.55e-07!4 | |ontology_enrichment_uberon=UBERON:0003075!1.23e-31!86;UBERON:0007284!1.23e-31!86;UBERON:0002346!7.49e-30!90;UBERON:0001049!3.86e-28!57;UBERON:0005068!3.86e-28!57;UBERON:0006241!3.86e-28!57;UBERON:0007135!3.86e-28!57;UBERON:0005743!2.34e-23!86;UBERON:0000073!3.32e-22!94;UBERON:0001016!3.32e-22!94;UBERON:0003056!7.92e-22!61;UBERON:0002616!2.99e-20!59;UBERON:0003076!1.05e-18!15;UBERON:0003057!1.05e-18!15;UBERON:0004121!2.06e-18!169;UBERON:0002020!7.62e-18!34;UBERON:0003528!7.62e-18!34;UBERON:0000924!9.08e-18!173;UBERON:0006601!9.08e-18!173;UBERON:0001017!2.42e-17!82;UBERON:0007023!4.27e-17!115;UBERON:0000033!1.94e-16!123;UBERON:0000955!3.29e-16!69;UBERON:0006238!3.29e-16!69;UBERON:0001893!1.81e-15!34;UBERON:0000153!2.55e-15!129;UBERON:0007811!2.55e-15!129;UBERON:0002308!2.56e-15!9;UBERON:0000125!2.56e-15!9;UBERON:0001869!2.64e-14!32;UBERON:0002780!4.29e-14!41;UBERON:0001890!4.29e-14!41;UBERON:0006240!4.29e-14!41;UBERON:0004732!6.18e-14!13;UBERON:0002791!8.00e-14!33;UBERON:0003080!1.12e-13!42;UBERON:0002104!2.14e-13!21;UBERON:0002298!2.55e-13!8;UBERON:0007625!3.52e-13!11;UBERON:0004733!1.41e-11!12;UBERON:0002028!1.41e-11!12;UBERON:0007277!1.41e-11!12;UBERON:0001032!1.87e-11!24;UBERON:0004456!1.87e-11!24;UBERON:0000970!2.07e-11!20;UBERON:0000966!3.04e-11!5;UBERON:0005388!3.04e-11!5;UBERON:0001802!3.04e-11!5;UBERON:0001781!6.84e-11!3;UBERON:0001782!6.84e-11!3;UBERON:0005424!6.84e-11!3;UBERON:0009663!2.47e-10!7;UBERON:0002240!2.98e-10!3;UBERON:0001872!5.17e-10!5;UBERON:0000988!5.74e-10!3;UBERON:0006331!7.81e-10!3;UBERON:0000020!1.08e-09!23;UBERON:0000019!1.79e-09!19;UBERON:0000047!1.79e-09!19;UBERON:0004088!1.79e-09!19;UBERON:0003072!1.79e-09!19;UBERON:0003071!1.79e-09!19;UBERON:0004128!1.79e-09!19;UBERON:0002619!6.41e-09!22;UBERON:0001456!1.94e-08!21;UBERON:0002680!2.40e-08!9;UBERON:0001895!2.40e-08!9;UBERON:0010092!2.40e-08!9;UBERON:0000064!3.29e-08!219;UBERON:0002420!5.68e-08!9;UBERON:0007245!5.68e-08!9;UBERON:0010009!5.68e-08!9;UBERON:0010011!5.68e-08!9;UBERON:0000454!5.68e-08!9;UBERON:0001950!6.52e-08!20;UBERON:0000956!1.05e-07!25;UBERON:0000203!1.05e-07!25;UBERON:0000488!3.91e-07!4;UBERON:0002148!4.28e-07!2;UBERON:0009662!4.28e-07!2;UBERON:0000369!5.55e-07!4;UBERON:0002435!5.55e-07!4;UBERON:0000204!5.55e-07!4;UBERON:0010082!5.55e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.83e-26;5!UBERON:0005388;3.83e-26;5!UBERON:0001802;3.83e-26;5!UBERON:0001781;1.07e-24;3!UBERON:0001782;1.07e-24;3!UBERON:0002104;2.41e-13;21!UBERON:0001032;1.28e-11;24!UBERON:0004456;1.28e-11;24!UBERON:0000970;5.29e-10;20!UBERON:0007029;2.65e-09;1!UBERON:0000989;4.15e-09;1!UBERON:0000941;4.15e-09;1!UBERON:0001785;4.15e-09;1!UBERON:0002464;4.15e-09;1!UBERON:0004904;4.15e-09;1!UBERON:0008811;4.15e-09;1!UBERON:0001021;4.15e-09;1!UBERON:0000020;1.13e-08;23!UBERON:0010371;1.18e-08;31!UBERON:0007625;4.02e-07;11!UBERON:0000019;5.21e-07;19!UBERON:0000047;5.21e-07;19!UBERON:0004088;5.21e-07;19!UBERON:0010230;5.21e-07;19 | |ontology_enrichment_uberon_v019=UBERON:0000966;3.83e-26;5!UBERON:0005388;3.83e-26;5!UBERON:0001802;3.83e-26;5!UBERON:0001781;1.07e-24;3!UBERON:0001782;1.07e-24;3!UBERON:0002104;2.41e-13;21!UBERON:0001032;1.28e-11;24!UBERON:0004456;1.28e-11;24!UBERON:0000970;5.29e-10;20!UBERON:0007029;2.65e-09;1!UBERON:0000989;4.15e-09;1!UBERON:0000941;4.15e-09;1!UBERON:0001785;4.15e-09;1!UBERON:0002464;4.15e-09;1!UBERON:0004904;4.15e-09;1!UBERON:0008811;4.15e-09;1!UBERON:0001021;4.15e-09;1!UBERON:0000020;1.13e-08;23!UBERON:0010371;1.18e-08;31!UBERON:0007625;4.02e-07;11!UBERON:0000019;5.21e-07;19!UBERON:0000047;5.21e-07;19!UBERON:0004088;5.21e-07;19!UBERON:0010230;5.21e-07;19 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,2.88e-33,6;UBERON:0005388,2.88e-33,6;UBERON:0001802,2.88e-33,6;UBERON:0001781,5.16e-32,4;UBERON:0001782,1.12e-24,3;UBERON:0005424,1.12e-24,3;UBERON:0000970,2.44e-13,21;UBERON:0002104,2.44e-13,21;UBERON:0000020,1.30e-11,24;UBERON:0001032,1.30e-11,24;UBERON:0004456,1.30e-11,24;UBERON:0000019,6.60e-10,20;UBERON:0000047,6.60e-10,20;UBERON:0010312,6.60e-10,20;UBERON:0004088,6.60e-10,20;UBERON:0010230,6.60e-10,20;UBERON:0003072,6.60e-10,20;UBERON:0004128,6.60e-10,20;UBERON:0003071,6.60e-10,20;UBERON:0007029,2.55e-09,1;UBERON:0000989,3.83e-09,1;UBERON:0008811,3.83e-09,1;UBERON:0006258,3.83e-09,1;UBERON:0005876,3.83e-09,1;UBERON:0004874,3.83e-09,1;UBERON:0000941,4.15e-09,1;UBERON:0001785,4.15e-09,1;UBERON:0002464,4.15e-09,1;UBERON:0004904,4.15e-09,1;UBERON:0001021,4.15e-09,1;UBERON:0003902,4.15e-09,1;UBERON:0005425,4.15e-09,1;UBERON:0001456,5.45e-09,22;UBERON:0007625,4.06e-07,11 | |||
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| ||
|short_description=p1@TRPM1 | |short_description=p1@TRPM1 | ||
}} | }} |
Revision as of 00:29, 21 November 2012
Short description: | p1@TRPM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TRPM1_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_ENST00000256552, ENST00000559179, NM_001252024, NM_001252030, NM_002420, uc001zfm.2, uc001zfn.3_5end |
EntrezGene: | TRPM1 |
HGNC: | 7146 |
UniProt: | F8W865Q6PE48Q7Z4N2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.65e-68 | 14 |
melanocyte | 1.67e-51 | 10 |
melanoblast | 1.67e-51 | 10 |
visual pigment cell | 1.20e-32 | 4 |
light melanocyte | 1.45e-25 | 3 |
neurecto-epithelial cell | 2.86e-25 | 20 |
retinal pigment epithelial cell | 1.12e-24 | 3 |
columnar/cuboidal epithelial cell | 1.88e-18 | 27 |
ecto-epithelial cell | 1.96e-14 | 34 |
migratory neural crest cell | 3.47e-11 | 41 |
dark melanocyte | 8.68e-10 | 1 |
neurectodermal cell | 1.46e-07 | 59 |
Langerhans cell | 3.14e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
retina | 2.88e-33 | 6 |
photoreceptor array | 2.88e-33 | 6 |
posterior segment of eyeball | 2.88e-33 | 6 |
layer of retina | 5.16e-32 | 4 |
pigmented layer of retina | 1.12e-24 | 3 |
presumptive retinal pigmented epithelium | 1.12e-24 | 3 |
eye | 2.44e-13 | 21 |
visual system | 2.44e-13 | 21 |
sense organ | 1.30e-11 | 24 |
sensory system | 1.30e-11 | 24 |
entire sense organ system | 1.30e-11 | 24 |
camera-type eye | 6.60e-10 | 20 |
simple eye | 6.60e-10 | 20 |
immature eye | 6.60e-10 | 20 |
ocular region | 6.60e-10 | 20 |
eyeball of camera-type eye | 6.60e-10 | 20 |
optic cup | 6.60e-10 | 20 |
optic vesicle | 6.60e-10 | 20 |
eye primordium | 6.60e-10 | 20 |
surface | 2.55e-09 | 1 |
penis | 3.83e-09 | 1 |
intromittent organ | 3.83e-09 | 1 |
lateral plate mesenchyme | 3.83e-09 | 1 |
undifferentiated genital tubercle | 3.83e-09 | 1 |
somatopleure | 3.83e-09 | 1 |
cranial nerve II | 4.15e-09 | 1 |
cranial nerve | 4.15e-09 | 1 |
nerve trunk | 4.15e-09 | 1 |
nerve connecting eye with brain | 4.15e-09 | 1 |
nerve | 4.15e-09 | 1 |
retinal neural layer | 4.15e-09 | 1 |
presumptive neural retina | 4.15e-09 | 1 |
face | 5.45e-09 | 22 |
pigment epithelium of eye | 4.06e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.38e-17 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.