FFCP PHASE1:Hg19::chr5:145317292..145317325,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000066!1.59e-32!254;CL:0002076!2.38e-19!43;CL:0000223!6.14e-17!59;CL:0002321!5.97e-11!248;CL:0000220!1.01e-10!246;CL:0002368!2.98e-10!13;CL:0000076!3.65e-09!62;CL:0002251!1.56e-08!21;CL:0000077!5.80e-08!19;CL:0002202!1.39e-07!9;CL:0002632!1.39e-07!9 | |ontology_enrichment_celltype=CL:0000066!1.59e-32!254;CL:0002076!2.38e-19!43;CL:0000223!6.14e-17!59;CL:0002321!5.97e-11!248;CL:0000220!1.01e-10!246;CL:0002368!2.98e-10!13;CL:0000076!3.65e-09!62;CL:0002251!1.56e-08!21;CL:0000077!5.80e-08!19;CL:0002202!1.39e-07!9;CL:0002632!1.39e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.02e-17;42!CL:0002368;2.02e-13;13!CL:0002251;5.71e-11;20!CL:0002202;8.84e-10;9!CL:0002632;8.84e-10;9!CL:0000077;2.31e-08;19!CL:0002159;1.11e-07;14!CL:0000622;3.87e-07;5!CL:1000497;9.82e-07;17!CL:0002518;9.82e-07;17 | |ontology_enrichment_celltype_v019=CL:0002076;2.02e-17;42!CL:0002368;2.02e-13;13!CL:0002251;5.71e-11;20!CL:0002202;8.84e-10;9!CL:0002632;8.84e-10;9!CL:0000077;2.31e-08;19!CL:0002159;1.11e-07;14!CL:0000622;3.87e-07;5!CL:1000497;9.82e-07;17!CL:0002518;9.82e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.98e-34,253;CL:0002076,5.21e-24,42;CL:0000223,7.61e-21,58;CL:0002368,1.89e-13,13;CL:0000076,1.98e-11,63;CL:0002251,5.74e-11,20;CL:0002321,4.27e-10,250;CL:0002202,8.35e-10,9;CL:0002632,8.35e-10,9;CL:0000077,2.25e-08,19;CL:0002159,1.12e-07,14;CL:0000622,3.76e-07,5;CL:0002077,6.98e-07,34;CL:1000497,9.10e-07,17;CL:0002518,9.10e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000223;1.16e-10;58 | |ontology_enrichment_development_v019=CL:0000223;1.16e-10;58 | ||
|ontology_enrichment_disease=DOID:305!5.04e-10!106;DOID:0050687!2.16e-08!143;DOID:1749!1.18e-07!14;DOID:162!1.84e-07!235;DOID:193!1.92e-07!29;DOID:14566!4.91e-07!239 | |ontology_enrichment_disease=DOID:305!5.04e-10!106;DOID:0050687!2.16e-08!143;DOID:1749!1.18e-07!14;DOID:162!1.84e-07!235;DOID:193!1.92e-07!29;DOID:14566!4.91e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.72e-10;14 | |ontology_enrichment_disease_v019=DOID:1749;3.72e-10;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,3.57e-10,14;DOID:305,1.53e-07,106;DOID:162,3.33e-07,235;DOID:14566,5.70e-07,239;DOID:0050687,7.15e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000064!1.43e-11!219;UBERON:0004119!1.18e-10!169;UBERON:0000925!1.18e-10!169;UBERON:0006595!1.18e-10!169;UBERON:0000481!1.00e-09!347;UBERON:0000464!3.53e-09!104;UBERON:0000062!5.31e-09!511;UBERON:0000922!9.56e-09!612;UBERON:0000466!1.43e-08!126;UBERON:0002050!7.00e-08!605;UBERON:0005423!7.00e-08!605;UBERON:0001007!7.65e-08!155;UBERON:0001555!7.65e-08!155;UBERON:0007026!7.65e-08!155;UBERON:0000923!1.11e-07!604;UBERON:0005291!1.11e-07!604;UBERON:0006598!1.11e-07!604;UBERON:0002532!1.11e-07!604;UBERON:0000475!1.29e-07!365;UBERON:0000153!1.39e-07!129;UBERON:0007811!1.39e-07!129;UBERON:0004121!1.98e-07!169;UBERON:0000033!2.39e-07!123;UBERON:0000467!2.42e-07!625;UBERON:0000480!3.20e-07!626;UBERON:0000924!4.20e-07!173;UBERON:0006601!4.20e-07!173;UBERON:0000483!4.79e-07!309;UBERON:0000119!7.03e-07!312;UBERON:0004921!8.08e-07!129;UBERON:0004185!8.08e-07!129 | |ontology_enrichment_uberon=UBERON:0000064!1.43e-11!219;UBERON:0004119!1.18e-10!169;UBERON:0000925!1.18e-10!169;UBERON:0006595!1.18e-10!169;UBERON:0000481!1.00e-09!347;UBERON:0000464!3.53e-09!104;UBERON:0000062!5.31e-09!511;UBERON:0000922!9.56e-09!612;UBERON:0000466!1.43e-08!126;UBERON:0002050!7.00e-08!605;UBERON:0005423!7.00e-08!605;UBERON:0001007!7.65e-08!155;UBERON:0001555!7.65e-08!155;UBERON:0007026!7.65e-08!155;UBERON:0000923!1.11e-07!604;UBERON:0005291!1.11e-07!604;UBERON:0006598!1.11e-07!604;UBERON:0002532!1.11e-07!604;UBERON:0000475!1.29e-07!365;UBERON:0000153!1.39e-07!129;UBERON:0007811!1.39e-07!129;UBERON:0004121!1.98e-07!169;UBERON:0000033!2.39e-07!123;UBERON:0000467!2.42e-07!625;UBERON:0000480!3.20e-07!626;UBERON:0000924!4.20e-07!173;UBERON:0006601!4.20e-07!173;UBERON:0000483!4.79e-07!309;UBERON:0000119!7.03e-07!312;UBERON:0004921!8.08e-07!129;UBERON:0004185!8.08e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.10e-07;30!UBERON:0001008;2.10e-07;30!UBERON:0007196;5.06e-07;15!UBERON:0001558;5.06e-07;15!UBERON:0005911;6.44e-07;36!UBERON:0004807;8.75e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0006554;2.10e-07;30!UBERON:0001008;2.10e-07;30!UBERON:0007196;5.06e-07;15!UBERON:0001558;5.06e-07;15!UBERON:0005911;6.44e-07;36!UBERON:0004807;8.75e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.40e-09,160;UBERON:0000925,1.40e-09,160;UBERON:0006595,1.40e-09,160;UBERON:0001007,4.32e-07,145;UBERON:0001555,4.32e-07,145;UBERON:0007026,4.32e-07,145;UBERON:0007196,4.95e-07,15;UBERON:0001558,4.95e-07,15;UBERON:0001004,5.65e-07,74;UBERON:0000033,6.34e-07,56;UBERON:0005177,7.42e-07,101 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,9.82935746006035,20.2362338712004,5.46103430325431,5.80287352102598,0,0,0.672325146451775,3.01347264011988,0.730310090387373,1.95173119516203,2.83178433576612,1.42800483870977,0.626909442956176,0.286235987131057,3.28498620174922,1.88313959392204,0,0,0,0,0,0,10.1136334692682,9.93979531968225,8.50434223383612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,0,0.12786256184353,0,0,0.434539556882471,0,0,3.78139268656271,7.31707011626461,3.86473057049755,0.327447688744282,16.3932879731644,10.381964397964,0,0,0,0,0,0,0,0,0,0,0,0.550236083880135,0.208994966536811,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,5.23312862571041,0,0.12663051166458,1.58891016975863,0.573673241497627,1.06400514659507,3.92474320099615,2.1349799145941,3.20667812942308,0,0,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0.206105058476878,0,0,0.337552664482532,0.0974370051611986,0,0,0,0,0,0.169560592310488,11.4023903366345,21.5469435266759,17.2082757233402,0.121973706129595,0.795178609928912,1.2781333715647,0.725627385107593,1.00928340350251,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,6.3953988042419,6.86271241194102,24.035312504489,16.8602629886429,12.9682374411004,4.25906847729236,0,0,7.21656710126366,0.927443239800615,1.87853910777315,0,0,0,0,0,0,0,0,10.3107217385455,48.8827993058681,27.7879190595077,13.6128954508329,14.2410629871841,25.3032568249039,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0.775630294546667,0,0,0,0,0,0,0,0,0,0,0,0,0,22.607953279469,9.58686804460323,33.7908710195353,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,3.74347550755453,0.535286966391485,0.157702415033935,0.234282829985426,0,0,0,0,2.76553752812555,0,0,0,0,0,0,0.606255142892519,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,4.95523743325651,10.4263364557708,0.644566922551274,0,0,0,10.8287907097779,4.38987421495164,10.1965469992991,4.38417673959782,1.47772280450026,0,0,1.94324324491925,1.54227252690289,4.06419656315779,5.51858751240339,0.254876273045038,2.49322802678617,4.25362033972139,0,0,5.12900250232778,5.576248976895,0.650756789328606,0.309123034943167,0.640986253728404,0.247528499761764,21.2478249058584,26.6524700874974,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,10.4129496677416,15.5673954565736,24.5016407989602,4.34978457678865,0,0.94443704049192,0.6970372701606,0,0.532306030317022,0,0.18532421910392,1.28812398067792,0,0,0,0,0,0,0.78494864019923,0,0,0,0.404364963146632,0,0.421258456238981,0,0,0,0,0,0,0,0.66343897524122,1.75380354101505,0,0,0.608731130888112,0.30982349809975,0,0,0,0,0,0,0,0,0,11.3542093016104,10.0545341330368,17.4225575778116,0.470719003883896,14.2066772981506,13.47771805341,15.5200553737836,6.20253180558791,0,0,0,0,0,0,0,0,3.20472213382419,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30998378285754,0.146508179271894,0,24.1832143882128,76.4326234909251,3.81991175580304,2.67268212749375,1.53580351049616,0,0.703347082052564,1.78093928036649,8.07538983711122,0,0.398495976502139,0.828851746593443,0,4.49982203009481,0,0.311039587661807,5.12249601539763,0.358042349351218,0,0.295930216910801,0,0,0,0.556608588971108,0,0,0,0,6.82760689712998,4.83081935556256,0,0,0,0,4.42870692906919,10.1301008445343,0,0,0,0.658156191461918,0,14.5000694049747,3.46276163267087,0.455768223388005,0,0,0,0.31900115973192,0.824378340616761,0.533034776018635,0,0,0,0,0,0,0,0,2.10998064528027,1.30586246527318,3.39247371441458,0,1.99052386215701,3.00755719311353,2.4441205797345,5.63390144493182,8.27878390941569,8.6670218089528,0.067401132980677,0,2.10838001152805,0,1.9566461893209,4.12726645207958,0,6.04953580243319,0.30607276163049,0,0.300646838828985,0,0.664653872707185,0,0.313932918407225,1.19472429772959,0,5.68566159353869,5.72747136505932,6.07552863969141,21.0683279924574,0,0,0.870806981601766,1.0232504392066,0.985385484638511,11.3477149291451,0,0,8.3595574034518,0,0.50648636764703,0.391102765469606,4.80952921509202,7.68430781061669,0.19980960958213,3.89044126316086,0.229073192331831,0,0.14405479798815,0.124252535565433,0.471388069233591,0.67952103036807,0.732219924186332,1.12198039399954,3.17845648891671,3.60252173225874,0.547621515567972,0,12.4631978011788,3.6804229599104,1.11712960508902,0,0,0.199679000498991,0,0,0.134366944973453,0.360299883542404,0,1.02418136999391,0.576911008668165,1.01105315781277,4.72451911270794,0,0,0.544813624446302,1.12527203925513,0.412618309791701,2.07720169014593,0.899895566206002,14.702237136601,0.728994679896296,5.36695500158826,0,0,0.211200673038813,0.896436696664224,5.75745591958336,0,0,0,0,1.72844298240254,0,0,0,1.19271615249795,0.453248366080503,0,0,0,0,2.73738940614927,9.16259529011673,0.427149650270779,0,0,0,0,0,19.788578990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| ||
|short_description=p3@SH3RF2 | |short_description=p3@SH3RF2 | ||
}} | }} |
Revision as of 03:04, 19 November 2012
Short description: | p3@SH3RF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SH3RF2_5end |
Coexpression cluster: | NA |
Association with transcript: | -60bp_to_uc011dbl.1_5end |
EntrezGene: | SH3RF2 |
HGNC: | 26299 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.98e-34 | 253 |
endo-epithelial cell | 5.21e-24 | 42 |
endodermal cell | 7.61e-21 | 58 |
respiratory epithelial cell | 1.89e-13 | 13 |
squamous epithelial cell | 1.98e-11 | 63 |
epithelial cell of alimentary canal | 5.74e-11 | 20 |
embryonic cell | 4.27e-10 | 250 |
epithelial cell of tracheobronchial tree | 8.35e-10 | 9 |
epithelial cell of lower respiratory tract | 8.35e-10 | 9 |
mesothelial cell | 2.25e-08 | 19 |
general ecto-epithelial cell | 1.12e-07 | 14 |
acinar cell | 3.76e-07 | 5 |
ecto-epithelial cell | 6.98e-07 | 34 |
kidney cell | 9.10e-07 | 17 |
kidney epithelial cell | 9.10e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.40e-09 | 160 |
endoderm | 1.40e-09 | 160 |
presumptive endoderm | 1.40e-09 | 160 |
digestive system | 4.32e-07 | 145 |
digestive tract | 4.32e-07 | 145 |
primitive gut | 4.32e-07 | 145 |
tracheobronchial tree | 4.95e-07 | 15 |
lower respiratory tract | 4.95e-07 | 15 |
respiratory system | 5.65e-07 | 74 |
head | 6.34e-07 | 56 |
trunk region element | 7.42e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.57e-10 | 14 |
carcinoma | 1.53e-07 | 106 |
cancer | 3.33e-07 | 235 |
disease of cellular proliferation | 5.70e-07 | 239 |
cell type cancer | 7.15e-07 | 143 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.