FFCP PHASE1:Hg19::chr21:11098922..11098942,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002178;1.33e-08;3 | |ontology_enrichment_celltype_v019=CL:0002178;1.33e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.33e-08,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!3.56e-26!235;DOID:14566!2.13e-25!239;DOID:0050687!8.19e-17!143;DOID:0050686!4.72e-13!137;DOID:305!1.77e-11!106;DOID:1036!2.84e-11!8;DOID:2531!7.89e-09!51;DOID:0060083!7.89e-09!51 | |ontology_enrichment_disease=DOID:162!3.56e-26!235;DOID:14566!2.13e-25!239;DOID:0050687!8.19e-17!143;DOID:0050686!4.72e-13!137;DOID:305!1.77e-11!106;DOID:1036!2.84e-11!8;DOID:2531!7.89e-09!51;DOID:0060083!7.89e-09!51 | ||
|ontology_enrichment_disease_v019=DOID:1036;1.17e-16;8!DOID:1325;1.25e-07;7!DOID:3904;1.25e-07;7!DOID:2531;1.38e-07;51!DOID:0060083;1.38e-07;51 | |ontology_enrichment_disease_v019=DOID:1036;1.17e-16;8!DOID:1325;1.25e-07;7!DOID:3904;1.25e-07;7!DOID:2531;1.38e-07;51!DOID:0060083;1.38e-07;51 | ||
|ontology_enrichment_disease_v019_2=DOID:162,1.19e-19,235;DOID:14566,4.20e-19,239;DOID:1036,1.30e-16,8;DOID:0050686,2.35e-15,137;DOID:2531,1.96e-10,51;DOID:0060083,1.96e-10,51;DOID:0050687,2.18e-09,143;DOID:1325,1.45e-07,7;DOID:3904,1.45e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.65e-12!9 | |ontology_enrichment_uberon=UBERON:0001737!2.65e-12!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001282;5.91e-07;1!UBERON:0009842;5.91e-07;1!UBERON:0003704;5.91e-07;1!UBERON:0001171;5.91e-07;1!UBERON:0001172;5.91e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0001282;5.91e-07;1!UBERON:0009842;5.91e-07;1!UBERON:0003704;5.91e-07;1!UBERON:0001171;5.91e-07;1!UBERON:0001172;5.91e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,5.75e-07,1;UBERON:0009842,5.75e-07,1;UBERON:0003704,5.75e-07,1;UBERON:0001171,5.75e-07,1;UBERON:0001172,5.75e-07,1;UBERON:0000945,7.02e-07,8;UBERON:0010039,7.02e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0,0,0,0.474541238222193,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03051603426729,0,0,0,0,0.556812347790485,0,0.270455678475983,0,0,0,0,0,1.89453753271713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.07326059364223,0,0,0,19.8317847228358,0,0,0,0,0,0,0,0,0,0,0,0,0,7.29229157420808,0,0,0.217294743844016,0,0,0,0,0,0,1.35357396370308,2.35275041181287,2.01385904371011,4.74384331810463,0,0,0,0,1.29833183845255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78154502040776,2.58328995213887,0,0,0.561111741760736,0,11.3891477461814,0,0,0.171594997861965,0,0,0,3.94122197613481,3.03348254305766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.79421995817089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.73158670144579,0,2.37955392192264,0,0,0,0,0,0,0,0,0,0,0.395223263795889,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,1.12482367165896,0,4.28198000317451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565909307848,0,0,0,0,1.89436477626897,0,0.552317850755522,0,0,0.76736622782191,0,1.25812753484717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.0596774046232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0.111231401892069,0,0,0,0,4.53447941559105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.1989385401771,0,0,0,0,0,1.63757624423474,0,0,0,1.09940516745429,32.1550856797015,0,0,0,0,0,0,0,0,0,0,0,4.29746970477194,0.178553938605658,10.9397410231864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13668047327359,2.94760543171796,0,0,0,0,0,0,1.90624166387043,0,0,0,0,0,0,0,0,1.28072815053259,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0,0,0,0.474541238222193,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03051603426729,0,0,0,0,0.556812347790485,0,0.270455678475983,0,0,0,0,0,1.89453753271713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.07326059364223,0,0,0,19.8317847228358,0,0,0,0,0,0,0,0,0,0,0,0,0,7.29229157420808,0,0,0.217294743844016,0,0,0,0,0,0,1.35357396370308,2.35275041181287,2.01385904371011,4.74384331810463,0,0,0,0,1.29833183845255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78154502040776,2.58328995213887,0,0,0.561111741760736,0,11.3891477461814,0,0,0.171594997861965,0,0,0,3.94122197613481,3.03348254305766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.79421995817089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.73158670144579,0,2.37955392192264,0,0,0,0,0,0,0,0,0,0,0.395223263795889,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,1.12482367165896,0,4.28198000317451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565909307848,0,0,0,0,1.89436477626897,0,0.552317850755522,0,0,0.76736622782191,0,1.25812753484717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.0596774046232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0.111231401892069,0,0,0,0,4.53447941559105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.1989385401771,0,0,0,0,0,1.63757624423474,0,0,0,1.09940516745429,32.1550856797015,0,0,0,0,0,0,0,0,0,0,0,4.29746970477194,0.178553938605658,10.9397410231864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13668047327359,2.94760543171796,0,0,0,0,0,0,1.90624166387043,0,0,0,0,0,0,0,0,1.28072815053259,0,0,0,0,0,0,0,0 | ||
|short_description=p1@BAGE3,p1@BAGE4,p1@BAGE5,p1@BAGE,p2@BAGE2 | |short_description=p1@BAGE3,p1@BAGE4,p1@BAGE5,p1@BAGE,p2@BAGE2 | ||
}} | }} |
Revision as of 16:19, 18 November 2012
Short description: | p1@BAGE3, p1@BAGE4, p1@BAGE5, p1@BAGE, p2@BAGE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BAGE3_5end, CAGE_peak_1_at_BAGE4_5end, CAGE_peak_1_at_BAGE5_5end, CAGE_peak_1_at_BAGE_5end, CAGE_peak_2_at_BAGE2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000470054, NM_001187, NM_181704, NM_182481, NM_182482, NM_182484, uc002yit.1, uc002yiu.1, uc002yiv.1, uc002yix.2_5end |
EntrezGene: | 574,85317,85318,85319,85316 |
HGNC: | 942, 15730, 15728, 15732&submit=Submit 15723, 942, 15730, 15728, 15732 |
UniProt: | Q13072Q86Y28Q86Y29Q86Y27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.33e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 5.75e-07 | 1 |
acinus | 5.75e-07 | 1 |
intrahepatic bile duct | 5.75e-07 | 1 |
portal lobule | 5.75e-07 | 1 |
hepatic acinus | 5.75e-07 | 1 |
stomach | 7.02e-07 | 8 |
food storage organ | 7.02e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.19e-19 | 235 |
disease of cellular proliferation | 4.20e-19 | 239 |
chronic leukemia | 1.30e-16 | 8 |
organ system cancer | 2.35e-15 | 137 |
hematologic cancer | 1.96e-10 | 51 |
immune system cancer | 1.96e-10 | 51 |
cell type cancer | 2.18e-09 | 143 |
bronchus cancer | 1.45e-07 | 7 |
bronchogenic carcinoma | 1.45e-07 | 7 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.