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{{UBERON
{{UBERON
|id=UBERON:0003661
|alt_id=
|name=limb muscle
|namespace=
|def="A muscle organ that is part of a limb [Obol]." [OBOL:automatic]
|xref=MA:0000692
|is_a=UBERON:0001630;;UBERON:0004120
|synonym="limb muscle organ" EXACT [OBOL:automatic];;"muscle organ of limb" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A muscle organ that is part of a limb [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003661
|is_a=UBERON:0014892
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002101
|name=limb muscle
|namespace=
|obo_creation_date=
|part_of=UBERON:0002101;;UBERON:0004480
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="limb muscle organ" EXACT [OBOL:automatic];;"muscle organ of limb" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0000692
}}
}}

Revision as of 11:25, 12 September 2014

Name:limb muscle
Definition:"A muscle organ that is part of a limb [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000692
Synonyms: "limb muscle organ" EXACT [OBOL:automatic]
"muscle organ of limb" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0014892(skeletal muscle organ)
part_of:UBERON:0002101(limb),UBERON:0004480(musculature of limb)



Children

is a:UBERON:0003663 (hindlimb muscle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003661 (limb muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_6b89c0a372c1f5adf83831ee9600fa14p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_6b89c0a372c1f5adf83831ee9600fa14p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_6b89c0a372c1f5adf83831ee9600fa14p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_6b89c0a372c1f5adf83831ee9600fa14p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_6b89c0a372c1f5adf83831ee9600fa14p@chr2:179396370..179396375, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_7355dca1eb97407b446ec13e34774ff7p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_7355dca1eb97407b446ec13e34774ff7p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_7355dca1eb97407b446ec13e34774ff7p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_7355dca1eb97407b446ec13e34774ff7p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_7355dca1eb97407b446ec13e34774ff7p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_7355dca1eb97407b446ec13e34774ff7p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_7355dca1eb97407b446ec13e34774ff7p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_7355dca1eb97407b446ec13e34774ff7p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_7355dca1eb97407b446ec13e34774ff7p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_7355dca1eb97407b446ec13e34774ff7p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_7355dca1eb97407b446ec13e34774ff7p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_7355dca1eb97407b446ec13e34774ff7p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_7355dca1eb97407b446ec13e34774ff7p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_7355dca1eb97407b446ec13e34774ff7p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_7355dca1eb97407b446ec13e34774ff7p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_7355dca1eb97407b446ec13e34774ff7p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_7355dca1eb97407b446ec13e34774ff7p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_7355dca1eb97407b446ec13e34774ff7p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_7355dca1eb97407b446ec13e34774ff7p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_7355dca1eb97407b446ec13e34774ff7p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_7355dca1eb97407b446ec13e34774ff7p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_7355dca1eb97407b446ec13e34774ff7p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_7355dca1eb97407b446ec13e34774ff7p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_7355dca1eb97407b446ec13e34774ff7p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_7355dca1eb97407b446ec13e34774ff7p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_7355dca1eb97407b446ec13e34774ff7p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_7355dca1eb97407b446ec13e34774ff7p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_7355dca1eb97407b446ec13e34774ff7p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_7355dca1eb97407b446ec13e34774ff7p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_7355dca1eb97407b446ec13e34774ff7p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_7355dca1eb97407b446ec13e34774ff7p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_7355dca1eb97407b446ec13e34774ff7p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_7355dca1eb97407b446ec13e34774ff7p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_7355dca1eb97407b446ec13e34774ff7p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_7355dca1eb97407b446ec13e34774ff7p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_7355dca1eb97407b446ec13e34774ff7p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_7355dca1eb97407b446ec13e34774ff7p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_7355dca1eb97407b446ec13e34774ff7p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_7355dca1eb97407b446ec13e34774ff7p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_7355dca1eb97407b446ec13e34774ff7p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_7355dca1eb97407b446ec13e34774ff7p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_7355dca1eb97407b446ec13e34774ff7p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_7355dca1eb97407b446ec13e34774ff7p@chr5:117747577..117747580, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr21:47769234..47769239, +
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_19c34f02c06328c30d2f4aa70d3a714dp38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_19c34f02c06328c30d2f4aa70d3a714dp27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_19c34f02c06328c30d2f4aa70d3a714dp27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_19c34f02c06328c30d2f4aa70d3a714dp@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_19c34f02c06328c30d2f4aa70d3a714dp@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_19c34f02c06328c30d2f4aa70d3a714dp73@XIRP2

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