UBERON:0010532: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0010532
|name=primitive nephron
|namespace=
|def=
|xref=
|is_a=UBERON:0001285;;UBERON:0003914;;UBERON:0004819;;UBERON:0006555
|synonym="developing n...") |
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|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0004209 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0003918 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:45, 27 June 2012
| Name: | primitive nephron |
|---|---|
| Synonyms: |
"developing nephron" BROAD [] "primitive nephron" BROAD [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001285(nephron),UBERON:0003914(epithelial tube),UBERON:0004819(kidney epithelium),UBERON:0006555(excretory tube) |
|---|---|
| develops_from: | UBERON:0004209(renal vesicle) |
| part_of: | UBERON:0003918(kidney mesenchyme) |
Children
| is a: | UBERON:0004198 (comma-shaped body),UBERON:0004199 (S-shaped body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010532 (primitive nephron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.87e-64 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_377d69737d5585a09a0e8eb7d72c31da | p@chr2:120409486..120409492, + |
| 6.87e-64 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_377d69737d5585a09a0e8eb7d72c31da | p@chr2:120409486..120409492, + |
| 9.62e-40 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_5c2bdc82a7f6f1d06735e9d6f1a279b8 | p1@ENST00000413103 |
| 9.62e-40 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_5c2bdc82a7f6f1d06735e9d6f1a279b8 | p1@ENST00000413103 |
| 1.16e-36 | FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_790109663b0e3c0ba86ed2ea1904b32b | p@chr17:79426453..79426462, + |
| 1.16e-36 | FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_790109663b0e3c0ba86ed2ea1904b32b | p@chr17:79426453..79426462, + |
| 1.31e-36 | FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_123d29227f17e25d17c80344f878f63c | p@chr8:77557753..77557755, - |
| 1.31e-36 | FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_123d29227f17e25d17c80344f878f63c | p@chr8:77557753..77557755, - |
| 5.58e-32 | FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_4b52cb1d6a73fd272c70983686b00971 | p6@TINAGL1 |
| 5.58e-32 | FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_4b52cb1d6a73fd272c70983686b00971 | p6@TINAGL1 |
| 1.53e-30 | FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_2acd2197ab57f8b24a0763955bcb4702 | p9@FURIN |
| 1.53e-30 | FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_2acd2197ab57f8b24a0763955bcb4702 | p9@FURIN |
| 3.83e-30 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_0e1ceeb620dc34bec844e653926b15e5 | p7@LRRN4 |
| 3.83e-30 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_0e1ceeb620dc34bec844e653926b15e5 | p7@LRRN4 |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_db06bad19f2f7a3e88399b2c4e57c752 | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_db06bad19f2f7a3e88399b2c4e57c752 | p7@OTOF |
| 1.78e-29 | FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_db06bad19f2f7a3e88399b2c4e57c752 | p@chr6:18225523..18225534, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_db06bad19f2f7a3e88399b2c4e57c752 | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_db06bad19f2f7a3e88399b2c4e57c752 | p@chr2:26700331..26700340, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_db06bad19f2f7a3e88399b2c4e57c752 | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_db06bad19f2f7a3e88399b2c4e57c752 | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_db06bad19f2f7a3e88399b2c4e57c752 | p7@OTOF |
| 1.78e-29 | FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_db06bad19f2f7a3e88399b2c4e57c752 | p@chr6:18225523..18225534, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_db06bad19f2f7a3e88399b2c4e57c752 | p@chr2:26700331..26700340, - |
| 7.96e-27 | FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_025d2c07e8b0277d6e7b150b2809381d | p@chr10:3477893..3477912, - |
| 7.96e-27 | FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_025d2c07e8b0277d6e7b150b2809381d | p@chr10:3477893..3477912, - |
| 6.29e-26 | FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_2836667f555f7220b22dfcfd9cb90c8c | p@chr1:172926077..172926120, - |
| 6.29e-26 | FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_2836667f555f7220b22dfcfd9cb90c8c | p@chr1:172926077..172926120, - |
| 6.32e-26 | FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_cedfe584c3fc3b4be23b9f5b8a578a2d | p5@APLN |
| 6.32e-26 | FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_cedfe584c3fc3b4be23b9f5b8a578a2d | p5@APLN |
| 9.89e-26 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_51b579c510ff8c5aa074caddbd8046f7 | p@chr2:693380..693398, + |
| 9.89e-26 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_51b579c510ff8c5aa074caddbd8046f7 | p@chr2:693380..693398, + |
| 1.28e-23 | FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_8013f769dbad6afead745de1a63760ac | p@chr6:84849252..84849259, + |
| 1.28e-23 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_8013f769dbad6afead745de1a63760ac | p@chr2:133426030..133426041, - |
| 1.28e-23 | FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_8013f769dbad6afead745de1a63760ac | p@chr6:84849252..84849259, + |
| 1.28e-23 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_8013f769dbad6afead745de1a63760ac | p@chr2:133426030..133426041, - |
| 1.44e-23 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_825d704d72c8013a4b1c0466ae333c54 | p23@TTC39A |
| 1.44e-23 | FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_825d704d72c8013a4b1c0466ae333c54 | p10@TRIL |
| 1.44e-23 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_825d704d72c8013a4b1c0466ae333c54 | p23@TTC39A |
| 1.44e-23 | FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_825d704d72c8013a4b1c0466ae333c54 | p10@TRIL |
| 1.61e-23 | FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_bbe5341046866b74bf1575ba6afbc23f | p@chr7:4051097..4051112, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_bbe5341046866b74bf1575ba6afbc23f | p@chr15:85403302..85403304, + |
| 1.61e-23 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_bbe5341046866b74bf1575ba6afbc23f | p@chr15:85403302..85403304, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_bbe5341046866b74bf1575ba6afbc23f | p@chr7:4051097..4051112, + |
| 1.8e-23 | FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_e152b8f24d18c194390abc7825505f70 | p@chr16:2141529..2141537, + |
| 1.8e-23 | FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_e152b8f24d18c194390abc7825505f70 | p@chr16:2141529..2141537, + |
| 2.92e-22 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_afb5b7044de3556475e8a0c37ee794c4 | p@chr5:74244100..74244117, + |
| 2.92e-22 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_afb5b7044de3556475e8a0c37ee794c4 | p@chr5:74244100..74244117, + |
| 5.69e-22 | FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_3e0bff10c681dda0b51203d6cbaa8446 | p@chr5:148651758..148651769, - |
| 5.69e-22 | FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_3e0bff10c681dda0b51203d6cbaa8446 | p@chr5:148651758..148651769, - |
| 2.9e-21 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_3410fdb2939d43cb9e84a75d0a6f6d0b | p@chr16:86768403..86768437, + |
| 2.9e-21 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_3410fdb2939d43cb9e84a75d0a6f6d0b | p@chr16:86768403..86768437, + |
| 4.78e-21 | FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_677c1fde1e83612cac874b1922f85ce9 | p@chr17:2076002..2076026, - |
| 4.78e-21 | FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_677c1fde1e83612cac874b1922f85ce9 | p@chr17:2076002..2076026, - |
| 1.26e-20 | FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_55077ee4ec6e49b255abfdd59e8ecf12 | p3@FAM167B |
| 1.26e-20 | FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_55077ee4ec6e49b255abfdd59e8ecf12 | p3@FAM167B |
| 2.32e-20 | FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_de868b3747c69ad668c501268df8b705 | p@chr11:124628392..124628427, - |
| 2.32e-20 | FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_de868b3747c69ad668c501268df8b705 | p@chr11:124628392..124628427, - |
| 3.42e-20 | FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_ff0362b52751bedb7891302505869bf4 | p1@ENST00000487339 |
| 3.42e-20 | FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_ff0362b52751bedb7891302505869bf4 | p1@ENST00000487339 |
| 3.44e-20 | FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_7a6e647fe95bcd9366ff9e0778eb3d4c | p@chr19:47231340..47231383, - |
| 3.44e-20 | FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_7a6e647fe95bcd9366ff9e0778eb3d4c | p@chr19:47231340..47231383, - |
| 3.58e-20 | FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_902cc13b8cc8612e74a3d6eeeda82309 | p@chr19:1826957..1826984, - |
| 3.58e-20 | FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_902cc13b8cc8612e74a3d6eeeda82309 | p@chr19:1826957..1826984, - |
| 4.39e-20 | FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_481a87cc481a48225981242c64ad4316 | p@chr4:38057595..38057624, - |
| 4.39e-20 | FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_481a87cc481a48225981242c64ad4316 | p@chr4:38057595..38057624, - |
| 7.13e-20 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_54af4e3931d139b93305c0e0f58426bf | p@chr2:133426106..133426117, - |
| 7.13e-20 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_54af4e3931d139b93305c0e0f58426bf | p@chr2:133426106..133426117, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_e3845e8f7740c0ef08b40e7b2f6579b0 | p@chr15:36653709..36653720, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_e3845e8f7740c0ef08b40e7b2f6579b0 | p@chr15:36653709..36653720, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_e3845e8f7740c0ef08b40e7b2f6579b0 | p@chr9:35753821..35753835, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_e3845e8f7740c0ef08b40e7b2f6579b0 | p@chr9:35753821..35753835, - |
| 8.62e-20 | FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_9f46560ed00ec074691003d6539b626d | p@chr4:145568170..145568180, - |
| 8.62e-20 | FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_9f46560ed00ec074691003d6539b626d | p@chr4:145568170..145568180, - |
| 1.04e-19 | FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_b98c3a3d607518fbd57ff88e55434041 | p1@WDR87 |
| 1.04e-19 | FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_b98c3a3d607518fbd57ff88e55434041 | p1@WDR87 |
| 1.15e-19 | FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_088ccf9aa16b7c45bd131aad148e5cbd | p@chr14:91270270..91270281, - |
| 1.15e-19 | FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_088ccf9aa16b7c45bd131aad148e5cbd | p@chr14:91270270..91270281, - |
| 2.44e-19 | FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_64f2c31eb2b072db1f1bcdbcfc280949 | p6@ACVRL1 |
| 2.44e-19 | FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_64f2c31eb2b072db1f1bcdbcfc280949 | p6@ACVRL1 |
| 3.27e-19 | FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_5c033260e364faa073e2c2f96522ceda | p@chr3:43538305..43538325, - |
| 3.27e-19 | FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_5c033260e364faa073e2c2f96522ceda | p@chr3:43538305..43538325, - |
| 4.64e-19 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_910081fb64daf4aa4853d46d25af8b2b | p@chr17:171147..171161, + |
| 4.64e-19 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_910081fb64daf4aa4853d46d25af8b2b | p@chr17:171147..171161, + |
| 5.39e-19 | FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_3393c0ad3d2594074462210c228bad95 | p@chr1:22211913..22211920, + |
| 5.39e-19 | FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_3393c0ad3d2594074462210c228bad95 | p@chr1:22211913..22211920, + |
| 1.99e-18 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_b319e5086a1d826591a0f38f2ffa8a9c | p7@HOXA10 |
| 1.99e-18 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_b319e5086a1d826591a0f38f2ffa8a9c | p7@HOXA10 |
| 2.69e-18 | FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_2036299e692d87e97fe2651539559deb | p3@TINAGL1 |
| 2.69e-18 | FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_2036299e692d87e97fe2651539559deb | p3@TINAGL1 |
| 4.1e-18 | FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_923189d2f2657bb3edc7e5a90ca8ffd8 | p17@CTGF |
| 4.1e-18 | FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_923189d2f2657bb3edc7e5a90ca8ffd8 | p17@CTGF |
| 5.7e-18 | FFCP PHASE2:Hg19::chr11:940729..940745,+#_8fb52c7dfdf917326cc275ddf57cf98c | p5@AP2A2 |
| 5.7e-18 | FFCP PHASE1:Hg19::chr11:940729..940745,+#_8fb52c7dfdf917326cc275ddf57cf98c | p5@AP2A2 |
| 6.5e-18 | FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_106d4b951848c8ea911dd89ac084e571 | p@chr19:42007093..42007107, - |
| 6.5e-18 | FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_106d4b951848c8ea911dd89ac084e571 | p@chr19:42007093..42007107, - |
| 6.99e-18 | FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_969117dfa6819d00cf4989ca260c4627 | p@chrX:128781853..128781866, - |
| 6.99e-18 | FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_969117dfa6819d00cf4989ca260c4627 | p@chrX:128781853..128781866, - |
| 1.24e-17 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_98f271f7c6db484b969f40ecd9b05b56 | p@chr16:86604624..86604648, + |
| 1.24e-17 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_98f271f7c6db484b969f40ecd9b05b56 | p@chr16:86604624..86604648, + |
