CL:0000499: Difference between revisions
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|id=CL:0000499 | |id=CL:0000499 | ||
|name=stromal cell | |name=stromal cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:A.11.329.830] | |def="A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:A.11.329.830] | ||
|xref=BTO:0002064;;FMA:83624 | |xref=BTO:0002064;;FMA:83624 | ||
|is_a=CL:0002320 | |is_a=CL:0002320 | ||
|synonym= | |synonym= | ||
|comment= | |comment= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:25, 26 June 2012
| Name: | stromal cell | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:A.11.329.830] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002320(connective tissue cell) |
|---|
Children
| is a: | CL:0000135 (fibrocyte),CL:0000327 (extracellular matrix secreting cell),CL:0002255 (stromal cell of endometrium),CL:0002574 (stromal cell of pancreas),CL:0002622 (prostate stromal cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
- 10497-107C2 (endometrial carcinoma cell line:OMC-2)
- 10623-108H2
- 10639-108I9 (serous adenocarcinoma cell line:JHOS-2)
- 10641-109A2
- 10643-109A4 (endometrioid adenocarcinoma cell line:JHUEM-1)
- 10644-109A5
- 10645-109A6
... further results Mouse (Mus musculus)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
- 10497-107C2 (endometrial carcinoma cell line:OMC-2)
- 10623-108H2
- 10639-108I9 (serous adenocarcinoma cell line:JHOS-2)
- 10641-109A2
- 10643-109A4 (endometrioid adenocarcinoma cell line:JHUEM-1)
- 10644-109A5
- 10645-109A6
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000499 (stromal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.7e-39 | FFCP PHASE1:Mm9::chr4:88940410..88940415,-#_545502ce61e66778c0954f628c5e6950 | p6@Cdkn2a |
| 1.7e-39 | FFCP PHASE2:Mm9::chr4:88940410..88940415,-#_545502ce61e66778c0954f628c5e6950 | p6@Cdkn2a |
| 2.12e-38 | FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_9ed9de45f2f0c2b482ede88462daad4e | p8@ACAN |
| 2.12e-38 | FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_9ed9de45f2f0c2b482ede88462daad4e | p8@ACAN |
| 2.37e-38 | FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_c05f326cf07cb4d7958c2717cc193725 | p9@ERG |
| 2.37e-38 | FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_c05f326cf07cb4d7958c2717cc193725 | p9@ERG |
| 4.69e-33 | FFCP PHASE1:Hg19::chr1:203149716..203149729,-#_4072d1ee4bac8c9d079a4464fabeb3ee | p19@CHI3L1 |
| 4.69e-33 | FFCP PHASE2:Hg19::chr1:203149716..203149729,-#_4072d1ee4bac8c9d079a4464fabeb3ee | p19@CHI3L1 |
| 5.7e-32 | FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_cd88056fb14eaa4072c8103b2e1a4dfe | p@chr15:89417758..89417770, + |
| 5.7e-32 | FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_cd88056fb14eaa4072c8103b2e1a4dfe | p@chr15:89417758..89417770, + |
| 6.54e-32 | FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_4b053d06362be978f7184be13615d920 | p6@ACAN |
| 6.54e-32 | FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_4b053d06362be978f7184be13615d920 | p6@ACAN |
| 3.21e-31 | FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_08e76ab867ec96fbdac9772d65676560 | p13@CHI3L1 |
| 3.21e-31 | FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_08e76ab867ec96fbdac9772d65676560 | p13@CHI3L1 |
| 9.11e-31 | FFCP PHASE2:Hg19::chr1:203154508..203154518,-#_04a967c5b3d93c28145d528b70ffe153 | p20@CHI3L1 |
| 9.11e-31 | FFCP PHASE1:Hg19::chr1:203154508..203154518,-#_04a967c5b3d93c28145d528b70ffe153 | p20@CHI3L1 |
| 5.61e-30 | FFCP PHASE2:Mm9::chr4:61715146..61715151,-#_08718e6774157a77e4beddcb3b985658 | p1@Mup20 |
| 5.61e-30 | FFCP PHASE1:Mm9::chr4:50498164..50498166,+#_08718e6774157a77e4beddcb3b985658 | p@chr4:50498164..50498166, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr4:50498164..50498166,+#_08718e6774157a77e4beddcb3b985658 | p@chr4:50498164..50498166, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr17:15914532..15914535,+#_08718e6774157a77e4beddcb3b985658 | p@chr17:15914532..15914535, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr17:15914532..15914535,+#_08718e6774157a77e4beddcb3b985658 | p@chr17:15914532..15914535, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr10:94173889..94173890,-#_08718e6774157a77e4beddcb3b985658 | p@chr10:94173889..94173890, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr4:61715146..61715151,-#_08718e6774157a77e4beddcb3b985658 | p1@Mup20 |
| 5.61e-30 | FFCP PHASE1:Mm9::chrX:45409736..45409738,+#_08718e6774157a77e4beddcb3b985658 | p@chrX:45409736..45409738, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr10:94173889..94173890,-#_08718e6774157a77e4beddcb3b985658 | p@chr10:94173889..94173890, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chrX:45409736..45409738,+#_08718e6774157a77e4beddcb3b985658 | p@chrX:45409736..45409738, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr2:156282978..156282979,+#_08718e6774157a77e4beddcb3b985658 | p@chr2:156282978..156282979, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr2:156282978..156282979,+#_08718e6774157a77e4beddcb3b985658 | p@chr2:156282978..156282979, + |
| 9.43e-30 | FFCP PHASE2:Hg19::chr1:203151934..203151947,-#_5269bb3b1911d6cbaec0280f6ab329fe | p7@CHI3L1 |
| 9.43e-30 | FFCP PHASE1:Hg19::chr1:203151934..203151947,-#_5269bb3b1911d6cbaec0280f6ab329fe | p7@CHI3L1 |
| 1.1e-29 | FFCP PHASE2:Mm9::chr4:138749194..138749201,+#_ebf32592bab4319ba5aa2a5e99e52387 | p@chr4:138749194..138749201, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr4:138749194..138749201,+#_ebf32592bab4319ba5aa2a5e99e52387 | p@chr4:138749194..138749201, + |
| 1.3e-29 | FFCP PHASE1:Hg19::chr1:203149741..203149762,-#_d26a8cde76f3c4384043b8e8bce49827 | p14@CHI3L1 |
| 1.3e-29 | FFCP PHASE2:Hg19::chr1:203149741..203149762,-#_d26a8cde76f3c4384043b8e8bce49827 | p14@CHI3L1 |
| 1.54e-29 | FFCP PHASE1:Mm9::chr7:4729743..4729746,-#_661f51b3e2943f81dcab3ce38e84a307 | p1@Il11 |
| 1.54e-29 | FFCP PHASE2:Mm9::chr7:4729743..4729746,-#_661f51b3e2943f81dcab3ce38e84a307 | p1@Il11 |
| 5.86e-29 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_f6cf35c03ba83638417b0b9733e026e1 | p@chr18:22150956..22150983, + |
| 5.86e-29 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_f6cf35c03ba83638417b0b9733e026e1 | p@chr18:22150956..22150983, + |
| 1.3e-28 | FFCP PHASE1:Hg19::chr1:203154342..203154363,-#_dd04190aa649e9aac538c40384f24fb3 | p9@CHI3L1 |
| 1.3e-28 | FFCP PHASE2:Hg19::chr1:203154342..203154363,-#_dd04190aa649e9aac538c40384f24fb3 | p9@CHI3L1 |
| 2.66e-28 | FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_ca009baba66f2a58fe6b2fa508e6d63a | p@chr1:186273262..186273282, + |
| 2.66e-28 | FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_ca009baba66f2a58fe6b2fa508e6d63a | p@chr1:186273262..186273282, + |
| 8.58e-28 | FFCP PHASE2:Hg19::chr1:203152908..203152924,-#_2e49a6376059dcd0ceb80efec5333488 | p@chr1:203152908..203152924, - |
| 8.58e-28 | FFCP PHASE1:Hg19::chr1:203152908..203152924,-#_2e49a6376059dcd0ceb80efec5333488 | p@chr1:203152908..203152924, - |
| 2.33e-26 | FFCP PHASE2:Hg19::chr1:203148919..203148937,-#_562861c2f019bf609b5163572359a59d | p16@CHI3L1 |
| 2.33e-26 | FFCP PHASE1:Hg19::chr1:203148919..203148937,-#_562861c2f019bf609b5163572359a59d | p16@CHI3L1 |
| 2.76e-26 | FFCP PHASE2:Hg19::chr1:203151964..203151973,-#_1103ceb063e8052d3209715465f551b5 | p21@CHI3L1 |
| 2.76e-26 | FFCP PHASE1:Hg19::chr1:203151964..203151973,-#_1103ceb063e8052d3209715465f551b5 | p21@CHI3L1 |
| 3.26e-26 | FFCP PHASE2:Hg19::chr11:73003801..73003812,+#_d52a597a3e8137142bd5c1797894fdf2 | p5@P2RY6 |
| 3.26e-26 | FFCP PHASE1:Hg19::chr11:73003801..73003812,+#_d52a597a3e8137142bd5c1797894fdf2 | p5@P2RY6 |
| 4.07e-26 | FFCP PHASE1:Hg19::chr1:203148907..203148922,+#_0057a5f8a3b3a688494ff5c0b8f7e33e | p@chr1:203148907..203148922, + |
| 4.07e-26 | FFCP PHASE2:Hg19::chr1:203148907..203148922,+#_0057a5f8a3b3a688494ff5c0b8f7e33e | p@chr1:203148907..203148922, + |
| 5.69e-26 | FFCP PHASE2:Hg19::chr1:203148057..203148072,+#_54977d4f92e0e7b480f7f54c8db94314 | p@chr1:203148057..203148072, + |
| 5.69e-26 | FFCP PHASE1:Hg19::chr1:203148057..203148072,+#_54977d4f92e0e7b480f7f54c8db94314 | p@chr1:203148057..203148072, + |
| 1.24e-25 | FFCP PHASE2:Hg19::chr15:89401833..89401842,+#_755bc1363a2926ca17f94e5fd8484e45 | p10@ACAN |
| 1.24e-25 | FFCP PHASE1:Hg19::chr15:89401833..89401842,+#_755bc1363a2926ca17f94e5fd8484e45 | p10@ACAN |
| 1.52e-25 | FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_9ddcb74ccffa3035e7af32d7b7e518f1 | p21@SEMA3C |
| 1.52e-25 | FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_9ddcb74ccffa3035e7af32d7b7e518f1 | p21@SEMA3C |
| 1.68e-25 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_7a814cd39dd6b78d6c89d728fe9c065a | p@chr8:57353982..57353991, - |
| 1.68e-25 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_7a814cd39dd6b78d6c89d728fe9c065a | p@chr8:57353982..57353991, - |
| 2.44e-25 | FFCP PHASE2:Hg19::chr8:57353888..57353898,-#_8a8669a5916e9440ccd13b644a4780e7 | p@chr8:57353888..57353898, - |
| 2.44e-25 | FFCP PHASE1:Hg19::chr8:57353888..57353898,-#_8a8669a5916e9440ccd13b644a4780e7 | p@chr8:57353888..57353898, - |
| 2.5e-25 | FFCP PHASE1:Hg19::chr1:203152791..203152804,-#_2a03d94792b09debc3098a8a110f75e0 | p@chr1:203152791..203152804, - |
| 2.5e-25 | FFCP PHASE2:Hg19::chr1:203152791..203152804,-#_2a03d94792b09debc3098a8a110f75e0 | p@chr1:203152791..203152804, - |
| 4.17e-25 | FFCP PHASE2:Hg19::chr8:57354275..57354292,-#_6e0be5bebe3afb32d28d5ebaf4ec245e | p@chr8:57354275..57354292, - |
| 4.17e-25 | FFCP PHASE1:Hg19::chr8:57354275..57354292,-#_6e0be5bebe3afb32d28d5ebaf4ec245e | p@chr8:57354275..57354292, - |
| 9.92e-25 | FFCP PHASE2:Hg19::chr1:203148394..203148401,-#_c4e5961ecff52a5704821064f0a8754f | p10@CHI3L1 |
| 9.92e-25 | FFCP PHASE1:Hg19::chr1:203148394..203148401,-#_c4e5961ecff52a5704821064f0a8754f | p10@CHI3L1 |
| 1.4e-24 | FFCP PHASE1:Hg19::chr7:45953320..45953329,+#_9e0ff36bb5fbc99cecd7b2ea738eccfd | p@chr7:45953320..45953329, + |
| 1.4e-24 | FFCP PHASE2:Hg19::chr7:45953320..45953329,+#_9e0ff36bb5fbc99cecd7b2ea738eccfd | p@chr7:45953320..45953329, + |
| 2.28e-24 | FFCP PHASE1:Mm9::chr11:100820213..100820220,-#_f7677782454849b2a684a0c54180f9e8 | p@chr11:100820213..100820220, - |
| 2.28e-24 | FFCP PHASE2:Mm9::chr11:100820213..100820220,-#_f7677782454849b2a684a0c54180f9e8 | p@chr11:100820213..100820220, - |
| 3.35e-24 | FFCP PHASE1:Hg19::chr1:203148428..203148437,-#_ba610b9e5182b519869c5f9adc4bb8fe | p11@CHI3L1 |
| 3.35e-24 | FFCP PHASE2:Hg19::chr1:203148428..203148437,-#_ba610b9e5182b519869c5f9adc4bb8fe | p11@CHI3L1 |
| 4.18e-24 | FFCP PHASE1:Hg19::chr1:203150369..203150408,-#_14d83e6fff19161e4d6b139563e57a03 | p@chr1:203150369..203150408, - |
| 4.18e-24 | FFCP PHASE2:Hg19::chr1:203150369..203150408,-#_14d83e6fff19161e4d6b139563e57a03 | p@chr1:203150369..203150408, - |
| 4.67e-24 | FFCP PHASE2:Hg19::chr7:45953152..45953169,+#_b106b6dd309361ff9d3be2b759921f9f | p@chr7:45953152..45953169, + |
| 4.67e-24 | FFCP PHASE1:Hg19::chr7:45953152..45953169,+#_b106b6dd309361ff9d3be2b759921f9f | p@chr7:45953152..45953169, + |
| 4.8e-24 | FFCP PHASE2:Hg19::chr8:57358432..57358446,-#_17abb1e6b0e158eff0a85f244cfc0976 | p3@PENK |
| 4.8e-24 | FFCP PHASE1:Hg19::chr8:57358432..57358446,-#_17abb1e6b0e158eff0a85f244cfc0976 | p3@PENK |
| 5.11e-24 | FFCP PHASE2:Mm9::chr11:117093260..117093293,+#_f48f1fbc03a92cd946b5089a723af5d8 | p34@Sept9 |
| 5.11e-24 | FFCP PHASE1:Mm9::chr11:117093260..117093293,+#_f48f1fbc03a92cd946b5089a723af5d8 | p34@Sept9 |
| 2.81e-23 | FFCP PHASE2:Hg19::chr7:150824026..150824027,-#_3af9f2e2878aef4b89cf5da728ed4cf0 | p@chr7:150824026..150824027, - |
| 2.81e-23 | FFCP PHASE1:Hg19::chr7:150824026..150824027,-#_3af9f2e2878aef4b89cf5da728ed4cf0 | p@chr7:150824026..150824027, - |
| 2.87e-23 | FFCP PHASE2:Hg19::chr1:203151897..203151908,-#_a89d84ae51177230eb2068a331eeac6c | p15@CHI3L1 |
| 2.87e-23 | FFCP PHASE1:Hg19::chr1:203151897..203151908,-#_a89d84ae51177230eb2068a331eeac6c | p15@CHI3L1 |
| 3.92e-23 | FFCP PHASE1:Hg19::chr1:186276386..186276397,+#_a8f0e2ce39b0e7e7d29e65d84b4c96fe | p@chr1:186276386..186276397, + |
| 3.92e-23 | FFCP PHASE2:Hg19::chr1:186276386..186276397,+#_a8f0e2ce39b0e7e7d29e65d84b4c96fe | p@chr1:186276386..186276397, + |
| 4.23e-23 | FFCP PHASE1:Hg19::chr8:57353995..57354004,-#_ad2e43e075ebe5308653580979eef4b6 | p@chr8:57353995..57354004, - |
| 4.23e-23 | FFCP PHASE2:Hg19::chr8:57353995..57354004,-#_ad2e43e075ebe5308653580979eef4b6 | p@chr8:57353995..57354004, - |
| 4.76e-23 | FFCP PHASE2:Hg19::chr1:203154349..203154356,+#_88de34a398bb5780f3b68016b806144c | p@chr1:203154349..203154356, + |
| 4.76e-23 | FFCP PHASE1:Hg19::chr1:203154349..203154356,+#_88de34a398bb5780f3b68016b806144c | p@chr1:203154349..203154356, + |
| 6.18e-23 | FFCP PHASE1:Hg19::chr1:203148612..203148623,-#_bbefce303b08acf34a6638bff920a2f3 | p12@CHI3L1 |
| 6.18e-23 | FFCP PHASE2:Hg19::chr1:203148612..203148623,-#_bbefce303b08acf34a6638bff920a2f3 | p12@CHI3L1 |
| 1.14e-22 | FFCP PHASE2:Hg19::chr8:57354119..57354137,+#_f07132422d013631e9d9b33c9d81c0db | p@chr8:57354119..57354137, + |
| 1.14e-22 | FFCP PHASE1:Hg19::chr8:57354119..57354137,+#_f07132422d013631e9d9b33c9d81c0db | p@chr8:57354119..57354137, + |
| 1.59e-22 | FFCP PHASE2:Hg19::chr19:18895742..18895757,-#_badc5d5b8fe74398ef6fdc69a65bf6ba | p@chr19:18895742..18895757, - |
| 1.59e-22 | FFCP PHASE1:Hg19::chr19:18895742..18895757,-#_badc5d5b8fe74398ef6fdc69a65bf6ba | p@chr19:18895742..18895757, - |
| 2.58e-22 | FFCP PHASE2:Hg19::chr8:57354463..57354473,+#_59d9582356fe8090da3fe18b8c4fd1fd | p@chr8:57354463..57354473, + |
| 2.58e-22 | FFCP PHASE1:Hg19::chr8:57354463..57354473,+#_59d9582356fe8090da3fe18b8c4fd1fd | p@chr8:57354463..57354473, + |
