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FFCP PHASE1:Mm9::chr5:23929310..23929319,-: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=12568
|EntrezGene=12568
|HGNC=
|HGNC=
|MCL_coexpression_id=464
|TSSclassifier=NA
|UniProt=P49615,Q543F6
|UniProt=P49615,Q543F6
|association_with_transcript=28bp_to_ENSMUST00000030814,NM_007668,uc008wrl.1_5end
|association_with_transcript=28bp_to_ENSMUST00000030814,NM_007668,uc008wrl.1_5end
|cluster_id=chr5:23929310..23929319,-
|description=CAGE_peak_3_at_Cdk5_5end
|description=CAGE_peak_3_at_Cdk5_5end
|id=chr5:23929310..23929319,-
|id=chr5:23929310..23929319,-
|ontology_enrichment_celltype=CL:0000117!1.43e-10!23;CL:0000337!1.43e-10!23;CL:0002319!1.50e-09!43;CL:0000221!2.07e-09!44;CL:0000133!2.07e-09!44;CL:0000540!8.04e-09!33;CL:0000047!8.04e-09!33;CL:0000031!8.04e-09!33;CL:0000404!8.04e-09!33;CL:0000055!1.46e-08!50;CL:0000393!3.41e-08!39;CL:0000211!3.41e-08!39
|ontology_enrichment_celltype=CL:0000117!1.43e-10!23;CL:0000337!1.43e-10!23;CL:0002319!1.50e-09!43;CL:0000221!2.07e-09!44;CL:0000133!2.07e-09!44;CL:0000540!8.04e-09!33;CL:0000047!8.04e-09!33;CL:0000031!8.04e-09!33;CL:0000404!8.04e-09!33;CL:0000055!1.46e-08!50;CL:0000393!3.41e-08!39;CL:0000211!3.41e-08!39
|ontology_enrichment_celltype_v019_2=CL:0000117,8.75e-21,23;CL:0000337,8.75e-21,23;CL:0000540,2.00e-13,33;CL:0000047,2.00e-13,33;CL:0000031,2.00e-13,33;CL:0000404,2.00e-13,33;CL:0002319,5.59e-11,43;CL:0000393,7.83e-11,39;CL:0000211,7.83e-11,39;CL:0000221,1.20e-10,44;CL:0000133,1.20e-10,44;CL:0002610,1.44e-08,3;CL:0002612,3.18e-08,3;CL:0002614,1.39e-07,3
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001017!8.25e-19!73;UBERON:0005743!8.25e-19!73;UBERON:0000073!1.13e-18!75;UBERON:0001016!1.13e-18!75;UBERON:0001049!2.42e-17!52;UBERON:0005068!2.42e-17!52;UBERON:0006241!2.42e-17!52;UBERON:0007135!2.42e-17!52;UBERON:0002346!3.17e-16!71;UBERON:0003075!3.17e-16!71;UBERON:0007284!3.17e-16!71;UBERON:0002616!2.55e-15!49;UBERON:0000033!6.99e-15!63;UBERON:0000955!1.40e-14!50;UBERON:0006238!1.40e-14!50;UBERON:0004121!2.70e-14!102;UBERON:0000924!2.70e-14!102;UBERON:0006601!2.70e-14!102;UBERON:0003056!6.88e-12!49;UBERON:0003080!1.62e-10!40;UBERON:0002020!3.12e-10!34;UBERON:0002780!6.11e-10!39;UBERON:0001890!6.11e-10!39;UBERON:0006240!6.11e-10!39;UBERON:0003076!2.27e-08!12;UBERON:0003057!2.27e-08!12;UBERON:0000153!3.45e-08!94;UBERON:0002791!2.96e-07!29;UBERON:0003528!2.96e-07!29;UBERON:0001893!2.96e-07!29;UBERON:0007811!6.86e-07!86;UBERON:0000991!7.65e-07!18;UBERON:0005564!7.65e-07!18
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.84e-21,54;UBERON:0003076,9.93e-20,12;UBERON:0003057,9.93e-20,12;UBERON:0001017,1.19e-18,73;UBERON:0001016,5.45e-18,75;UBERON:0001049,9.68e-18,52;UBERON:0005068,9.68e-18,52;UBERON:0006241,9.68e-18,52;UBERON:0007135,9.68e-18,52;UBERON:0002240,2.55e-15,6;UBERON:0005174,2.55e-15,6;UBERON:0001137,2.55e-15,6;UBERON:0002346,1.92e-13,64;UBERON:0003075,1.92e-13,64;UBERON:0007284,1.92e-13,64;UBERON:0001948,5.02e-13,5;UBERON:0002315,5.02e-13,5;UBERON:0004121,6.73e-13,95;UBERON:0000924,6.73e-13,95;UBERON:0006601,6.73e-13,95;UBERON:0010371,3.71e-11,73;UBERON:0002020,1.25e-10,34;UBERON:0002950,9.85e-10,4;UBERON:0001891,9.85e-10,4;UBERON:0009616,9.85e-10,4;UBERON:0010286,9.85e-10,4;UBERON:0002616,1.20e-09,46;UBERON:0000955,2.29e-09,47;UBERON:0006238,2.29e-09,47;UBERON:0004684,1.44e-08,3;UBERON:0002275,1.44e-08,3;UBERON:0002257,3.18e-08,3;UBERON:0010314,8.05e-08,92;UBERON:0002038,1.39e-07,3;UBERON:0009663,1.39e-07,3;UBERON:0009661,1.39e-07,3;UBERON:0000125,1.39e-07,3;UBERON:0002308,1.39e-07,3;UBERON:0004733,7.19e-07,6;UBERON:0004732,7.19e-07,6;UBERON:0002028,7.19e-07,6;UBERON:0007277,7.19e-07,6;UBERON:0002420,7.87e-07,8;UBERON:0007245,7.87e-07,8;UBERON:0010009,7.87e-07,8;UBERON:0010011,7.87e-07,8;UBERON:0000454,7.87e-07,8
|phase1_expression=0.480446541314382,0.348975407639361,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0.157731082679119,0,0,0.680346321208558,0,0.783599367416806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.202753862439029,0.367093504323363,0.782391344348039,0.218025156380447,0.439372365468944,1.55543919259427,0.279972843250725,0,0,0,0,0.257259436035947,0,0,1.41621522601718,1.5869729378161,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0.384218305321555,0.103689612308478,0.135005938331691,0,2.85650984403804,4.41737081903227,0.367472397644862,0.479227355091182,0.919218786610021,2.20231761998777,3.19218345212969,3.68655679814984,1.05509030184155,1.28082701043374,0.52091337055676,4.74611098302348,1.12552522006336,1.22238598221448,3.24091444021034,3.41692033917847,1.3047961207771,0.227178579999552,0.151143120213571,0.289864488701678,0,0,0,0,0,0.280888840263504,0.511290967734173,0.259786004602869,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0,0,0.148442139064825,0.346970653532272,0,0,0,0.117588707135705,0.251333182659351,0,0,0,0,0,0,0,1.17112318804619,1.46612694769419,0,0.11981512450592,0,0,1.79748767285787,0.915001205637253,0.251308704225729,0.869121600961382,1.27857728665165,2.70124457927428,3.73154905055843,0.305518091550949,0.124406970610093,0.252722758433675,0.210441855886474,0.130120442962704,0.919608417733892,0.360124259610698,0.452114453507145,0.408218994907967,0.384341160854549,0.374806898238915,0.258703370739016,0.431135985865684,0.945530400839096,0.351902248327898,0.43839146485515,0.834141747676794,0.696504333044333,0.205782136407943,1.79130840136644,0,0,0,0.207125772535502,0.234526059981096,0,0,0.196764231747404,0,0,0,0.116765342367169,0.16455984991348,0,0,0,0,0,0.630869845692382,0.720332286654991,0,0,0.639864751605702,0.464473343720877,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0.379335801906163,0.342745537829186,0,0.203651327845314,0.193952487167626,0.140271639780637,0.0632365371242573,0,0.156998727841375,0.123397163921801,0,0,0,0.224862112384854,0,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0,0.358794827043824,0,0,0.37898282354097,0.488894929326078,0.339490171550376,0.234690248288502,0,0.238043640886014,0.195133647857799,0,0,0.159454768657487,0,0,0,0,0,0,0.275936746304732,3.85321415970701,6.56385444916338,0.163934945376675,0,0.315508219416257,0.390438744296638,0,0,0.222798674082394,0,0.809621403349789,0.876767573733936,0,0,0.425820255624806,0.534196811001766,0.325773918707152,0.164970122972535,0,0,0.302323556964751,0.188605079755898,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0.680879211507576,0.36012218806262,0.517434735131018,0.214337035031592,0.532020700926821,0.356737635204141,0.329098041204242,0.304464949114599,0.469343416127421,0.42366414172764,0,0,0,0.0603129249281559,0,0,0,2.78137953015765,0.170870880797853,0,0.370389054739423,0,0,0,0,0,0,0,0.316335993581135,0,0.324016022465404,0,0,0,0,0,0.129614973291793,0,2.25477175473676,0.448549638131936,0.992750942742586,0.972255941720238,0.387479470433193,1.35164900392623,1.76035857968631,1.69265700297135,1.78260885523708,0.724752362478018,2.01621004380506,0,0.405450430580328,0,0.129920822977795,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0,0.116876902181569,0,0.221985953374065,0.0897138566094757,0.167884616364078,0.19318959403219,0.563047426353546,0,0,0,1.12950368523413,0.920650473014354,0.572895513439397,0.515559547031063,1.37016503954128,0,1.35004500046361,0,0.453142408984205,0,0.103787347584177,2.39414924040619,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.666740183404846,0,0.320919209591815,0.252697211763798,0.50695859978048,0.565879024158229,0.37456602987953,0.256100609619477,0.17230640686684,0.476293691283074,0.231768651889711,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.715308569841963,0.436039249896986,0.658765662907314,0.423073039458382,0.73171189149109,0.263069711437843,0.271608227691724,1.12228454331548,0.118635018124174,0.492522411877817,1.22769312950907,0.309873682371932,0,0.749431733813838,0.467863216890817,0.429742108096597,0,0,0.463735671240843
|phase1_expression=0.480446541314382,0.348975407639361,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0.157731082679119,0,0,0.680346321208558,0,0.783599367416806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.202753862439029,0.367093504323363,0.782391344348039,0.218025156380447,0.439372365468944,1.55543919259427,0.279972843250725,0,0,0,0,0.257259436035947,0,0,1.41621522601718,1.5869729378161,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0.384218305321555,0.103689612308478,0.135005938331691,0,2.85650984403804,4.41737081903227,0.367472397644862,0.479227355091182,0.919218786610021,2.20231761998777,3.19218345212969,3.68655679814984,1.05509030184155,1.28082701043374,0.52091337055676,4.74611098302348,1.12552522006336,1.22238598221448,3.24091444021034,3.41692033917847,1.3047961207771,0.227178579999552,0.151143120213571,0.289864488701678,0,0,0,0,0,0.280888840263504,0.511290967734173,0.259786004602869,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0,0,0.148442139064825,0.346970653532272,0,0,0,0.117588707135705,0.251333182659351,0,0,0,0,0,0,0,1.17112318804619,1.46612694769419,0,0.11981512450592,0,0,1.79748767285787,0.915001205637253,0.251308704225729,0.869121600961382,1.27857728665165,2.70124457927428,3.73154905055843,0.305518091550949,0.124406970610093,0.252722758433675,0.210441855886474,0.130120442962704,0.919608417733892,0.360124259610698,0.452114453507145,0.408218994907967,0.384341160854549,0.374806898238915,0.258703370739016,0.431135985865684,0.945530400839096,0.351902248327898,0.43839146485515,0.834141747676794,0.696504333044333,0.205782136407943,1.79130840136644,0,0,0,0.207125772535502,0.234526059981096,0,0,0.196764231747404,0,0,0,0.116765342367169,0.16455984991348,0,0,0,0,0,0.630869845692382,0.720332286654991,0,0,0.639864751605702,0.464473343720877,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0.379335801906163,0.342745537829186,0,0.203651327845314,0.193952487167626,0.140271639780637,0.0632365371242573,0,0.156998727841375,0.123397163921801,0,0,0,0.224862112384854,0,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0,0.358794827043824,0,0,0.37898282354097,0.488894929326078,0.339490171550376,0.234690248288502,0,0.238043640886014,0.195133647857799,0,0,0.159454768657487,0,0,0,0,0,0,0.275936746304732,3.85321415970701,6.56385444916338,0.163934945376675,0,0.315508219416257,0.390438744296638,0,0,0.222798674082394,0,0.809621403349789,0.876767573733936,0,0,0.425820255624806,0.534196811001766,0.325773918707152,0.164970122972535,0,0,0.302323556964751,0.188605079755898,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0.680879211507576,0.36012218806262,0.517434735131018,0.214337035031592,0.532020700926821,0.356737635204141,0.329098041204242,0.304464949114599,0.469343416127421,0.42366414172764,0,0,0,0.0603129249281559,0,0,0,2.78137953015765,0.170870880797853,0,0.370389054739423,0,0,0,0,0,0,0,0.316335993581135,0,0.324016022465404,0,0,0,0,0,0.129614973291793,0,2.25477175473676,0.448549638131936,0.992750942742586,0.972255941720238,0.387479470433193,1.35164900392623,1.76035857968631,1.69265700297135,1.78260885523708,0.724752362478018,2.01621004380506,0,0.405450430580328,0,0.129920822977795,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0,0.116876902181569,0,0.221985953374065,0.0897138566094757,0.167884616364078,0.19318959403219,0.563047426353546,0,0,0,1.12950368523413,0.920650473014354,0.572895513439397,0.515559547031063,1.37016503954128,0,1.35004500046361,0,0.453142408984205,0,0.103787347584177,2.39414924040619,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.666740183404846,0,0.320919209591815,0.252697211763798,0.50695859978048,0.565879024158229,0.37456602987953,0.256100609619477,0.17230640686684,0.476293691283074,0.231768651889711,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.715308569841963,0.436039249896986,0.658765662907314,0.423073039458382,0.73171189149109,0.263069711437843,0.271608227691724,1.12228454331548,0.118635018124174,0.492522411877817,1.22769312950907,0.309873682371932,0,0.749431733813838,0.467863216890817,0.429742108096597,0,0,0.463735671240843
|short_description=p3@Cdk5
|short_description=p3@Cdk5
}}
}}

Latest revision as of 20:34, 25 September 2015

Short description:p3@Cdk5
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_3_at_Cdk5_5end
Coexpression cluster:MCL_coexpression_mm9:464
Association with transcript: 28bp_to_ENSMUST00000030814, NM_007668, uc008wrl.1_5end
EntrezGene:Cdk5
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p3@Cdk5

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.48
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.35
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.13
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.09
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.16
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.68
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.78
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.88
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.20
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.37
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.78
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.22
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.44
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C31.56
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.28
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.26
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C31.42
Mouse Granule cells, donor2.CNhs12357.11731-123E31.59
Mouse Granule cells, donor3.CNhs12108.11636-122C70.63
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.30
Mouse Microglia, donor2.CNhs12634.11736-123E80.38
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.10
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.14
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F12.86
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D54.42
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.37
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.48
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.92
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D32.20
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F33.19
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D73.69
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D41.06
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F41.28
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D80.52
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E44.75
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E51.13
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I61.22
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D63.24
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F63.42
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E11.30
Mouse Schwann, donor1.CNhs12507.11728-123D90.23
Mouse Schwann, donor2.CNhs12573.11746-123F90.15
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.29
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.28
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.51
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.26
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.35
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.14
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.00
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.15
adrenal gland, embryo E14.CNhs11038.406-44C50.35
adrenal gland, embryo E16.CNhs11004.1254-43D60.00
adrenal gland, embryo E17.CNhs11043.1263-45I10.00
adrenal gland, embryo E18.CNhs11026.1262-18F50.00
adrenal gland, neonate N00.CNhs11191.1311-23C10.12
adrenal gland, neonate N25.CNhs11223.1377-27I30.25
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.00
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.00
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B21.17
cerebellum, neonate N30.CNhs11135.1395-42I21.47
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.12
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A41.80
corpus striatum, adult.CNhs10487.19-21D80.92
corpus striatum, neonate N00.CNhs11226.630-43F10.25
cortex, adult.CNhs10473.12-14D50.87
cortex, neonate N30.CNhs11107.1392-42F21.28
diencephalon, adult.CNhs10482.20-12F22.70
diencephalon, neonate N30.CNhs11201.1388-42B23.73
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.31
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.12
epididymis, adult.CNhs10490.58-23B20.25
eyeball, adult.CNhs10484.31-12G40.21
eyeball, embryo E12.CNhs11016.345-16C60.13
eyeball, embryo E14.CNhs10521.399-16E20.92
eyeball, embryo E15.CNhs10593.426-16C90.36
eyeball, embryo E17.CNhs11023.1261-18D40.45
eyeball, neonate N00.CNhs11207.633-15C60.41
eyeball, neonate N01.CNhs11140.1532-43E70.38
eyeball, neonate N02.CNhs11205.1551-44G80.37
eyeball, neonate N16.CNhs11188.777-19A20.26
forelimb, embryo E11.CNhs10596.335-25E20.43
forelimb, embryo E12.CNhs10600.359-14H20.95
forelimb, embryo E13.CNhs10589.384-1E20.35
forelimb, embryo E14.CNhs10577.413-26A80.44
forelimb, embryo E15.CNhs11007.437-20E70.83
forelimb, embryo E17.CNhs10598.1517-43C40.70
forelimb, embryo E18.CNhs11008.1520-43B50.21
gonad, embryo E13.CNhs11044.1564-45I61.79
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.21
heart, embryo E12.CNhs11015.353-12F50.23
heart, embryo E13.CNhs11013.376-3I90.00
heart, embryo E14.CNhs10597.403-26D40.00
heart, embryo E15.CNhs11017.431-16C80.20
heart, embryo E16.CNhs11021.457-17C60.00
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.00
heart, neonate N00.CNhs11213.639-21E30.12
heart, neonate N03.CNhs11221.1349-25I20.16
heart, neonate N10.CNhs11118.749-24G10.00
heart, neonate N16.CNhs11209.782-15G10.00
heart, neonate N20.CNhs11127.821-26I60.00
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.00
hippocampus, adult.CNhs10478.13-16E80.63
hippocampus, neonate N00.CNhs11228.627-43G10.72
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I50.64
intestine, embryo E13.CNhs11010.381-16D50.46
intestine, embryo E15.CNhs10602.976-16D80.39
intestine, embryo E16.CNhs10585.463-22H40.20
intestine, embryo E17.CNhs10582.482-18D30.22
intestine, embryo E18.CNhs10526.1289-20F70.00
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.16
intestine, neonate N06.CNhs11102.688-20B80.00
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.00
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.38
kidney, embryo E15.CNhs10997.434-16F80.34
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.20
kidney, embryo E18.CNhs11001.1288-20C70.19
kidney, neonate N00.CNhs11214.646-21G70.14
kidney, neonate N10.CNhs11206.758-6D50.06
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.16
kidney, neonate N30.CNhs11203.1385-42H10.12
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.22
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.24
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.31
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.36
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G20.38
lung, embryo E14.CNhs10604.404-26F80.49
lung, embryo E15.CNhs11020.432-17C50.34
lung, embryo E16.CNhs10998.458-17B60.23
lung, embryo E17.CNhs10605.480-44A60.00
lung, embryo E18.CNhs10583.1287-20I60.24
lung, neonate N00.CNhs11224.640-42C60.20
lung, neonate N06.CNhs11212.683-20E50.00
lung, neonate N07.CNhs11111.715-19A30.00
lung, neonate N10.CNhs11219.750-23E60.16
lung, neonate N20.CNhs11109.822-18A40.00
lung, neonate N25.CNhs11119.1359-25C70.00
lung, neonate N30.CNhs11133.1394-42H20.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.28
medulla oblongata, adult.CNhs10477.17-12C23.85
medulla oblongata, neonate N30.CNhs11200.1396-42A36.56
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.16
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.32
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.39
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.22
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.81
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.88
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.00
olfactory brain, adult.CNhs10489.18-22I90.00
ovary, adult.CNhs10507.91-2I70.43
ovary, embryo E18.CNhs11040.505-44H70.53
ovary, neonate N00.CNhs11217.1299-22I40.33
oviduct, adult pregnant day01.CNhs10500.988-6G60.16
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.30
pancreas, embryo E16.CNhs11003.460-26E50.19
pancreas, embryo E17.CNhs10599.1558-45G30.30
pancreas, embryo E18.CNhs10580.1535-43I70.00
pancreas, neonate N00.CNhs11105.645-26G90.26
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.68
pituitary gland, embryo E12.CNhs11018.346-16E60.36
pituitary gland, embryo E13.CNhs11009.370-44C70.52
pituitary gland, embryo E14.CNhs11037.398-44A50.21
pituitary gland, embryo E15.CNhs10592.427-16B90.53
pituitary gland, embryo E16.CNhs11036.449-43F60.36
pituitary gland, embryo E17.CNhs11039.1265-44F50.33
pituitary gland, neonate N00.CNhs11190.1308-22E90.30
placenta, adult pregnant day10.CNhs10472.539-13I70.47
placenta, adult pregnant day17.CNhs10464.577-18G30.42
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.00
skin, neonate N00.CNhs11124.650-25G40.00
skin, neonate N03.CNhs11215.662-22H30.06
skin, neonate N06.CNhs11097.693-20I50.00
skin, neonate N10.CNhs11108.762-6C40.00
small intestine, neonate N16.CNhs11114.790-21I10.00
spinal cord, adult.CNhs10505.24-13C92.78
spleen, adult.CNhs10465.25-2G20.17
spleen, embryo E16.CNhs11035.461-43C10.00
spleen, embryo E18.CNhs11011.1271-21F20.37
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.32
stomach, embryo E15.CNhs10603.1252-16G80.00
stomach, embryo E16.CNhs11022.459-17D40.32
stomach, embryo E17.CNhs11006.1035-18D50.00
stomach, embryo E18.CNhs10999.1286-20C60.00
stomach, neonate N03.CNhs11193.1340-24B80.00
stomach, neonate N07.CNhs11210.718-18A90.00
stomach, neonate N25.CNhs11104.1355-25E40.00
stomach, neonate N30.CNhs11134.1386-42I10.13
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G52.25
testis, embryo E13.CNhs11031.389-23F50.45
testis, embryo E15.CNhs11034.443-27C50.99
testis, embryo E16.CNhs11033.470-26G50.97
testis, embryo E17.CNhs11029.486-18I50.39
testis, embryo E18.CNhs11027.503-18G51.35
testis, neonate N00.CNhs11189.1300-22B71.76
testis, neonate N07.CNhs11222.726-26I41.69
testis, neonate N10.CNhs11204.763-44D91.78
testis, neonate N20.CNhs11110.839-18H30.72
testis, neonate N30.CNhs11130.1391-42E22.02
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.41
thymus, embryo E15.CNhs11005.430-45I20.00
thymus, embryo E16.CNhs11002.456-26C50.13
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.10
thymus, neonate N07.CNhs11211.713-19D30.08
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.00
thymus, neonate N30.CNhs11132.1393-42G20.12
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.22
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.09
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.17
urinary bladder, adult.CNhs10481.879-12E40.19
uterus, adult pregnant day19.CNhs10497.590-15F50.56
uterus, adult.CNhs10509.92-27E50.00
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A11.13
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A20.92
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A30.57
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D70.52
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A41.37
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A50.00
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A61.35
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.00
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A80.45
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A90.00
whole body, embryo E11.CNhs11014.324-5I80.10
whole body, embryo E12.CNhs10587.857-27C92.39
whole body, embryo E13.CNhs10512.372-23H20.17
whole body, embryo E14.5.CNhs10578.420-27D20.49
whole body, embryo E14.CNhs10519.395-14B10.21
whole body, embryo E16.CNhs10514.453-14F20.18
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.67
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.32
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.51
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.57
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.37
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.26
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.17
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.23
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.15
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.69
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.18
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.72
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.44
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.66
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.42
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.73
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.26
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.27
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G51.12
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.12
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.49
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G51.23
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.31
whole body, embryo E17.5.CNhs10513.490-9F90.00
whole body, embryo E17.CNhs10517.475-3I50.75
whole body, embryo E18.CNhs10516.493-3B30.47
whole body, neonate N00.CNhs10525.657-19C20.43
whole body, neonate N01.CNhs10576.659-23C60.00
whole body, neonate N06.CNhs10515.692-21D10.00
whole body, neonate N10.CNhs10518.761-6B40.46





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
regional part of nervous system6.84e-2154
posterior neural tube9.93e-2012
chordal neural plate9.93e-2012
central nervous system1.19e-1873
nervous system5.45e-1875
neural tube9.68e-1852
neural rod9.68e-1852
future spinal cord9.68e-1852
neural keel9.68e-1852
spinal cord2.55e-156
dorsal region element2.55e-156
dorsum2.55e-156
neurectoderm1.92e-1364
neural plate1.92e-1364
presumptive neural plate1.92e-1364
regional part of spinal cord5.02e-135
gray matter of spinal cord5.02e-135
ectoderm-derived structure6.73e-1395
ectoderm6.73e-1395
presumptive ectoderm6.73e-1395
ecto-epithelium3.71e-1173
gray matter1.25e-1034
regional part of midbrain9.85e-104
midbrain9.85e-104
presumptive midbrain9.85e-104
midbrain neural tube9.85e-104
regional part of brain1.20e-0946
brain2.29e-0947
future brain2.29e-0947
raphe nuclei1.44e-083
reticular formation1.44e-083
ventral horn of spinal cord3.18e-083
structure with developmental contribution from neural crest8.05e-0892
substantia nigra1.39e-073
telencephalic nucleus1.39e-073
midbrain nucleus1.39e-073
neural nucleus1.39e-073
nucleus of brain1.39e-073
segmental subdivision of hindbrain7.19e-076
segmental subdivision of nervous system7.19e-076
hindbrain7.19e-076
presumptive hindbrain7.19e-076
basal ganglion7.87e-078
nuclear complex of neuraxis7.87e-078
aggregate regional part of brain7.87e-078
collection of basal ganglia7.87e-078
cerebral subcortex7.87e-078
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