FFCP PHASE1:Mm9::chr2:4803250..4803298,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=109079 | |EntrezGene=109079 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=108 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BH69 | |UniProt=Q8BH69 | ||
|association_with_transcript=0bp_to_ENSMUST00000115019,uc008ifc.1_5end | |association_with_transcript=0bp_to_ENSMUST00000115019,uc008ifc.1_5end | ||
|cluster_id=chr2:4803250..4803298,+ | |||
|description=CAGE_peak_3_at_Sephs1_5end | |description=CAGE_peak_3_at_Sephs1_5end | ||
|id=chr2:4803250..4803298,+ | |id=chr2:4803250..4803298,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.91e-08!33;CL:0000047!1.91e-08!33;CL:0000031!1.91e-08!33;CL:0000404!1.91e-08!33;CL:0000117!1.18e-07!23;CL:0000337!1.18e-07!23 | |ontology_enrichment_celltype=CL:0000540!1.91e-08!33;CL:0000047!1.91e-08!33;CL:0000031!1.91e-08!33;CL:0000404!1.91e-08!33;CL:0000117!1.18e-07!23;CL:0000337!1.18e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.96e-08,33;CL:0000047,1.96e-08,33;CL:0000031,1.96e-08,33;CL:0000404,1.96e-08,33;CL:0000117,1.22e-07,23;CL:0000337,1.22e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.87e-12!71;UBERON:0003075!2.87e-12!71;UBERON:0007284!2.87e-12!71;UBERON:0003056!5.87e-10!49;UBERON:0004121!1.31e-09!102;UBERON:0000924!1.31e-09!102;UBERON:0006601!1.31e-09!102;UBERON:0001017!4.14e-09!73;UBERON:0005743!4.14e-09!73;UBERON:0000033!9.34e-09!63;UBERON:0000073!4.31e-08!75;UBERON:0001016!4.31e-08!75;UBERON:0000468!5.30e-08!333;UBERON:0001049!6.65e-08!52;UBERON:0005068!6.65e-08!52;UBERON:0006241!6.65e-08!52;UBERON:0007135!6.65e-08!52;UBERON:0000479!2.84e-07!349 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.88e-12,64;UBERON:0003075,6.88e-12,64;UBERON:0007284,6.88e-12,64;UBERON:0010371,4.29e-10,73;UBERON:0010314,6.25e-10,92;UBERON:0003056,7.24e-10,49;UBERON:0001017,4.88e-09,73;UBERON:0004121,6.35e-09,95;UBERON:0000924,6.35e-09,95;UBERON:0006601,6.35e-09,95;UBERON:0001016,4.82e-08,75;UBERON:0001049,7.99e-08,52;UBERON:0005068,7.99e-08,52;UBERON:0006241,7.99e-08,52;UBERON:0007135,7.99e-08,52;UBERON:0000479,1.80e-07,349;UBERON:0000073,1.89e-07,54 | |||
|phase1_expression=11.3705681444404,0.348975407639361,0,0,0,1.6787927191189,1.40167584357315,0.387369970324729,0.422366166455,1.87251621057595,1.19852577757853,0.797721589953364,1.36960583944965,1.31130603628496,1.33243904726265,1.41732687172878,4.19737126876888,1.89277299214943,1.7824876368746,0.42438965179803,1.87095238332354,3.3758923408301,2.87319768052829,0.639969691173627,0.45881856213434,0,0.430761996159075,0.646413698057667,1.33016393619462,2.26827116783938,0.886922042621219,1.90509202037889,3.69038872550742,0,1.73310971850765,3.15845826181135,1.42918549383658,0.418531630736908,0,1.0470474879476,0,0.683045484958446,0.485510353031154,1.1330713617802,1.11514624341466,1.28482726513177,3.12956537739216,2.8343270329458,1.75748946187577,3.88859798148567,2.79972843250725,1.43752564364972,0.167782606057736,0.725362142011344,1.00828139742739,0.514518872071894,0.85960031981627,2.06268836910977,14.3644687210314,15.340738398889,19.0149421051854,2.37191172448392,3.55717918444456,1.7997994345628,0,2.8419204597844,1.49800055259202,1.92109152660777,8.19147937236973,9.04539786822327,7.15104868594699,10.8547374073445,10.6016899656774,15.0663683034393,11.5973019932066,21.1420320920305,2.20231761998777,2.80912143787413,3.37934373163736,17.8046488435762,14.729510619988,12.5019208933622,3.62937898701795,0.56276261003168,3.20876320331301,11.7851434189467,10.6778760599327,10.4383689662168,0.37863096666592,1.058001841495,1.44932244350839,0,0,1.07940638327563,0.649776417447669,1.34408066129201,1.26399978118577,1.70430322578058,0.779358013808606,4.24007489412408,7.60554466794075,2.56652954828636,10.1922095882658,0,1.08245520505607,2.28023878927589,0.505524445014783,1.59857431606684,0,1.63286352971307,5.03107447621794,5.1759131313064,5.07354093963329,4.22023393547343,5.76184664964954,3.39299796590124,5.43828929015623,1.59059292611903,0,3.07357014900077,1.98757366614354,0,3.72783522436244,3.80615036115011,2.93225389538837,1.27728527604296,2.15667224110656,1.19980546198682,1.27070227073065,4.6435098215495,3.20250421973039,15.0785222535437,2.08589184230732,3.83573185995496,2.49345653471472,4.05603157669394,9.47106083807942,3.6078021476927,9.85618757891331,2.94618598241064,10.539755879979,10.8053989083732,10.9837899181263,11.1521565198429,15.0360663124435,11.914575986491,10.5882948752494,8.01980449290949,9.7005596819779,10.2117283290622,9.14945845652534,10.5213951565236,6.39508673218875,4.179025998266,3.2925141825271,10.3497818745616,2.1066395619397,1.02939162845886,1.13665399758237,4.55676699578104,6.56672967947069,5.22179978236943,5.91861838963026,5.50939848892731,5.707883176833,2.55787339225449,3.75582761959467,5.7215017759913,2.96207729844265,2.46251196118643,1.94565142910054,1.02339991197733,1.3173006917463,0.805238512562231,3.57492912559016,10.2904612379284,0.330418782983798,0.793351699990633,11.5175655289026,8.82499353069666,7.86091514064769,4.43703754171354,4.22518283305254,3.99473814836374,0.474529061544512,4.94096864172033,2.76468729680296,4.17808591286417,4.09424582950152,2.69645822596266,1.08069024937347,1.1948476395262,10.2420666514664,8.68288695833939,12.3978509240388,10.1825663922657,6.98228953803453,9.53847150508332,7.27220176928959,3.83786384746966,3.29697328466887,4.56569506510662,0,2.8363667971736,2.35870794135844,1.34917267430912,2.23146133527353,1.4470629585145,1.52775511068852,2.30156909960649,2.2698931748505,0.549122826376163,2.87536413054709,3.72140947668503,2.18426371180192,0.757736633841335,0.896987067609561,1.92977408545347,2.77129785249907,10.0430448238357,8.47417877498535,8.48725428875941,8.21415869009757,5.52770649557992,4.52282917683426,6.24427673144956,7.40885177299098,7.52979944805835,7.33491935824441,2.78567635016755,2.07221978239075,2.60368305446721,1.50791283939272,0,0.983528546038072,2.20749397043786,2.88991061978026,4.10240903072711,1.3114795630134,1.51482556322624,5.04813151066011,5.46614242015294,6.24727853425117,4.77937595905104,3.56477878531831,3.96307143104365,4.04810701674894,4.09158201075837,4.34816555741176,5.78378369559253,5.81954349353901,8.72521457969551,14.1711654637611,3.95928295134085,0,8.49732226542435,4.53485335447127,3.96070667487386,2.95301892880773,3.68922177532713,4.65170927702798,7.63420831902762,7.12994756769443,2.21225730555071,4.21674434299995,1.03135543248187,6.80879211507576,12.6042765821917,13.5826617971892,10.7168517515796,10.6404140185364,10.3453914209201,10.6956863391379,7.61162372786498,1.40803024838226,1.48282449604674,1.10264199027481,1.81374878235628,3.71368181400583,1.86970067277283,1.55184047204077,1.31312719796049,2.04036585640896,2.96680483216816,1.02522528478712,7.22354037871279,2.59272338317596,1.88368457004691,0.546776910884101,1.37266903923914,0.849892149969277,0.839708713941948,1.38199973804424,1.90934123603023,13.6024477239888,6.91286188231286,6.58832579012988,3.13632444021703,4.58561383866973,4.45052343069908,5.20716771069616,1.30877970992015,1.55537967950151,1.86401793926078,1.69107881605257,9.27002585472668,6.45288112782681,7.19469396872976,7.23295011475294,7.94093789806657,6.45464812551647,5.9894017028217,2.9360616439199,2.65742532908607,2.59227005632079,1.58005560314089,4.25722952109345,4.82741498674688,3.89762468933385,4.11761400035207,1.19208812868759,1.9231271923195,1.77227432609493,1.61546319917036,2.51482461961499,1.91569751759997,0.974578807397524,2.21287235772758,1.16876902181569,0.906921534460845,0.665957860122194,0.448569283047378,1.00730769818447,4.63655025677257,1.68914227906064,2.74727436400898,1.50057865355346,3.00943262421218,6.7770221114048,4.14292712856459,7.44764167471216,4.46818274093588,2.05524755931193,3.7769694869485,4.72515750162264,2.70192721934532,0.906284817968409,3.10656187051092,12.350694362517,9.97562183502578,12.2928196142977,5.10524105843418,6.91723436672342,4.59608771125035,5.55616819504038,4.32673620201678,3.20919209591815,4.80124702351215,5.0695859978048,3.77252682772152,4.12022632867483,4.54578582074572,4.25022470271538,3.81034953026459,6.2577536010222,3.47236596834669,5.35711671044299,3.38557516309114,3.77156177623957,3.72699192934609,4.5302876089991,3.77900683244054,4.98779716201252,4.99226186560891,4.57319932181931,6.05060336307039,4.34573164306758,6.73370725989286,5.10130577933949,5.31924204828043,4.91077251803627,3.87342102964915,4.24394544158511,7.24450676020043,3.04111090979031,6.87587372954555,2.86932498103265,3.08827986767322,4.17362104116759 | |phase1_expression=11.3705681444404,0.348975407639361,0,0,0,1.6787927191189,1.40167584357315,0.387369970324729,0.422366166455,1.87251621057595,1.19852577757853,0.797721589953364,1.36960583944965,1.31130603628496,1.33243904726265,1.41732687172878,4.19737126876888,1.89277299214943,1.7824876368746,0.42438965179803,1.87095238332354,3.3758923408301,2.87319768052829,0.639969691173627,0.45881856213434,0,0.430761996159075,0.646413698057667,1.33016393619462,2.26827116783938,0.886922042621219,1.90509202037889,3.69038872550742,0,1.73310971850765,3.15845826181135,1.42918549383658,0.418531630736908,0,1.0470474879476,0,0.683045484958446,0.485510353031154,1.1330713617802,1.11514624341466,1.28482726513177,3.12956537739216,2.8343270329458,1.75748946187577,3.88859798148567,2.79972843250725,1.43752564364972,0.167782606057736,0.725362142011344,1.00828139742739,0.514518872071894,0.85960031981627,2.06268836910977,14.3644687210314,15.340738398889,19.0149421051854,2.37191172448392,3.55717918444456,1.7997994345628,0,2.8419204597844,1.49800055259202,1.92109152660777,8.19147937236973,9.04539786822327,7.15104868594699,10.8547374073445,10.6016899656774,15.0663683034393,11.5973019932066,21.1420320920305,2.20231761998777,2.80912143787413,3.37934373163736,17.8046488435762,14.729510619988,12.5019208933622,3.62937898701795,0.56276261003168,3.20876320331301,11.7851434189467,10.6778760599327,10.4383689662168,0.37863096666592,1.058001841495,1.44932244350839,0,0,1.07940638327563,0.649776417447669,1.34408066129201,1.26399978118577,1.70430322578058,0.779358013808606,4.24007489412408,7.60554466794075,2.56652954828636,10.1922095882658,0,1.08245520505607,2.28023878927589,0.505524445014783,1.59857431606684,0,1.63286352971307,5.03107447621794,5.1759131313064,5.07354093963329,4.22023393547343,5.76184664964954,3.39299796590124,5.43828929015623,1.59059292611903,0,3.07357014900077,1.98757366614354,0,3.72783522436244,3.80615036115011,2.93225389538837,1.27728527604296,2.15667224110656,1.19980546198682,1.27070227073065,4.6435098215495,3.20250421973039,15.0785222535437,2.08589184230732,3.83573185995496,2.49345653471472,4.05603157669394,9.47106083807942,3.6078021476927,9.85618757891331,2.94618598241064,10.539755879979,10.8053989083732,10.9837899181263,11.1521565198429,15.0360663124435,11.914575986491,10.5882948752494,8.01980449290949,9.7005596819779,10.2117283290622,9.14945845652534,10.5213951565236,6.39508673218875,4.179025998266,3.2925141825271,10.3497818745616,2.1066395619397,1.02939162845886,1.13665399758237,4.55676699578104,6.56672967947069,5.22179978236943,5.91861838963026,5.50939848892731,5.707883176833,2.55787339225449,3.75582761959467,5.7215017759913,2.96207729844265,2.46251196118643,1.94565142910054,1.02339991197733,1.3173006917463,0.805238512562231,3.57492912559016,10.2904612379284,0.330418782983798,0.793351699990633,11.5175655289026,8.82499353069666,7.86091514064769,4.43703754171354,4.22518283305254,3.99473814836374,0.474529061544512,4.94096864172033,2.76468729680296,4.17808591286417,4.09424582950152,2.69645822596266,1.08069024937347,1.1948476395262,10.2420666514664,8.68288695833939,12.3978509240388,10.1825663922657,6.98228953803453,9.53847150508332,7.27220176928959,3.83786384746966,3.29697328466887,4.56569506510662,0,2.8363667971736,2.35870794135844,1.34917267430912,2.23146133527353,1.4470629585145,1.52775511068852,2.30156909960649,2.2698931748505,0.549122826376163,2.87536413054709,3.72140947668503,2.18426371180192,0.757736633841335,0.896987067609561,1.92977408545347,2.77129785249907,10.0430448238357,8.47417877498535,8.48725428875941,8.21415869009757,5.52770649557992,4.52282917683426,6.24427673144956,7.40885177299098,7.52979944805835,7.33491935824441,2.78567635016755,2.07221978239075,2.60368305446721,1.50791283939272,0,0.983528546038072,2.20749397043786,2.88991061978026,4.10240903072711,1.3114795630134,1.51482556322624,5.04813151066011,5.46614242015294,6.24727853425117,4.77937595905104,3.56477878531831,3.96307143104365,4.04810701674894,4.09158201075837,4.34816555741176,5.78378369559253,5.81954349353901,8.72521457969551,14.1711654637611,3.95928295134085,0,8.49732226542435,4.53485335447127,3.96070667487386,2.95301892880773,3.68922177532713,4.65170927702798,7.63420831902762,7.12994756769443,2.21225730555071,4.21674434299995,1.03135543248187,6.80879211507576,12.6042765821917,13.5826617971892,10.7168517515796,10.6404140185364,10.3453914209201,10.6956863391379,7.61162372786498,1.40803024838226,1.48282449604674,1.10264199027481,1.81374878235628,3.71368181400583,1.86970067277283,1.55184047204077,1.31312719796049,2.04036585640896,2.96680483216816,1.02522528478712,7.22354037871279,2.59272338317596,1.88368457004691,0.546776910884101,1.37266903923914,0.849892149969277,0.839708713941948,1.38199973804424,1.90934123603023,13.6024477239888,6.91286188231286,6.58832579012988,3.13632444021703,4.58561383866973,4.45052343069908,5.20716771069616,1.30877970992015,1.55537967950151,1.86401793926078,1.69107881605257,9.27002585472668,6.45288112782681,7.19469396872976,7.23295011475294,7.94093789806657,6.45464812551647,5.9894017028217,2.9360616439199,2.65742532908607,2.59227005632079,1.58005560314089,4.25722952109345,4.82741498674688,3.89762468933385,4.11761400035207,1.19208812868759,1.9231271923195,1.77227432609493,1.61546319917036,2.51482461961499,1.91569751759997,0.974578807397524,2.21287235772758,1.16876902181569,0.906921534460845,0.665957860122194,0.448569283047378,1.00730769818447,4.63655025677257,1.68914227906064,2.74727436400898,1.50057865355346,3.00943262421218,6.7770221114048,4.14292712856459,7.44764167471216,4.46818274093588,2.05524755931193,3.7769694869485,4.72515750162264,2.70192721934532,0.906284817968409,3.10656187051092,12.350694362517,9.97562183502578,12.2928196142977,5.10524105843418,6.91723436672342,4.59608771125035,5.55616819504038,4.32673620201678,3.20919209591815,4.80124702351215,5.0695859978048,3.77252682772152,4.12022632867483,4.54578582074572,4.25022470271538,3.81034953026459,6.2577536010222,3.47236596834669,5.35711671044299,3.38557516309114,3.77156177623957,3.72699192934609,4.5302876089991,3.77900683244054,4.98779716201252,4.99226186560891,4.57319932181931,6.05060336307039,4.34573164306758,6.73370725989286,5.10130577933949,5.31924204828043,4.91077251803627,3.87342102964915,4.24394544158511,7.24450676020043,3.04111090979031,6.87587372954555,2.86932498103265,3.08827986767322,4.17362104116759 | ||
|short_description=p3@Sephs1 | |short_description=p3@Sephs1 | ||
}} | }} |
Latest revision as of 17:54, 26 September 2015
Short description: | p3@Sephs1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sephs1_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | 0bp_to_ENSMUST00000115019, uc008ifc.1_5end |
EntrezGene: | Sephs1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.96e-08 | 33 |
neuronal stem cell | 1.96e-08 | 33 |
neuroblast | 1.96e-08 | 33 |
electrically signaling cell | 1.96e-08 | 33 |
CNS neuron (sensu Vertebrata) | 1.22e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.22e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 6.88e-12 | 64 |
neural plate | 6.88e-12 | 64 |
presumptive neural plate | 6.88e-12 | 64 |
ecto-epithelium | 4.29e-10 | 73 |
structure with developmental contribution from neural crest | 6.25e-10 | 92 |
pre-chordal neural plate | 7.24e-10 | 49 |
central nervous system | 4.88e-09 | 73 |
ectoderm-derived structure | 6.35e-09 | 95 |
ectoderm | 6.35e-09 | 95 |
presumptive ectoderm | 6.35e-09 | 95 |
nervous system | 4.82e-08 | 75 |
neural tube | 7.99e-08 | 52 |
neural rod | 7.99e-08 | 52 |
future spinal cord | 7.99e-08 | 52 |
neural keel | 7.99e-08 | 52 |
tissue | 1.80e-07 | 349 |
regional part of nervous system | 1.89e-07 | 54 |