FFCP PHASE1:Hg19::chr13:106737646..106737650,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:106737646..106737650,- | |||
|coexpression_cluster_id=C3351 | |||
|description=CAGE_peak_at_chr13:106737646..106737650,- | |description=CAGE_peak_at_chr13:106737646..106737650,- | ||
|id=chr13:106737646..106737650,- | |id=chr13:106737646..106737650,- | ||
|ontology_enrichment_celltype=CL:0000039!1.11e-08!7;CL:0000586!1.11e-08!7 | |ontology_enrichment_celltype=CL:0000039!1.11e-08!7;CL:0000586!1.11e-08!7 | ||
|ontology_enrichment_celltype_v019=CL:0002563;1.52e-09;4!CL:0002251;3.86e-07;20!CL:0000182;5.42e-07;12!CL:0002076;8.89e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,3.19e-13,58;CL:0002563,1.73e-09,4;CL:0002251,4.59e-07,20;CL:0000066,4.65e-07,253;CL:0002076,6.24e-07,42;CL:0000182,7.18e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0005425;6.05e-10;1!CL:0000223;9.67e-08;58!UBERON:0004161;1.38e-07;11!UBERON:0001041;3.65e-07;30!UBERON:0003104;8.47e-07;31 | |||
|ontology_enrichment_disease=DOID:305!6.56e-11!106;DOID:3119!3.44e-08!14;DOID:0050687!1.33e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:3119;2.90e-10;14!DOID:4960;6.05e-10;1!DOID:0070004;6.05e-10;1!DOID:5662;6.05e-10;1!DOID:305;1.76e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.95e-16,106;DOID:0050687,3.73e-11,143;DOID:3119,3.57e-10,14;DOID:4960,4.85e-10,1;DOID:0070004,4.85e-10,1;DOID:5662,9.82e-10,1;DOID:162,6.29e-09,235;DOID:14566,1.12e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0005409!1.96e-07!35;UBERON:0003135!2.56e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;6.05e-10;1!UBERON:0001282;6.05e-10;1!UBERON:0001785;6.05e-10;1!UBERON:0002464;6.05e-10;1!UBERON:0004904;6.05e-10;1!UBERON:0009842;6.05e-10;1!UBERON:0003704;6.05e-10;1!UBERON:0001021;6.05e-10;1!UBERON:0001171;6.05e-10;1!UBERON:0001172;6.05e-10;1!UBERON:0001052;1.52e-09;4!UBERON:0001242;1.52e-09;4!UBERON:0001262;1.52e-09;4!UBERON:0004786;1.52e-09;4!UBERON:0004808;1.52e-09;4!UBERON:0001277;1.52e-09;4!UBERON:0004907;8.31e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,4.06e-10,1;UBERON:0001785,4.06e-10,1;UBERON:0002464,4.06e-10,1;UBERON:0004904,4.06e-10,1;UBERON:0001021,4.06e-10,1;UBERON:0003902,4.06e-10,1;UBERON:0005425,4.06e-10,1;UBERON:0001282,1.07e-09,1;UBERON:0009842,1.07e-09,1;UBERON:0003704,1.07e-09,1;UBERON:0001171,1.07e-09,1;UBERON:0001172,1.07e-09,1;UBERON:0001242,1.73e-09,4;UBERON:0001262,1.73e-09,4;UBERON:0004786,1.73e-09,4;UBERON:0004808,1.73e-09,4;UBERON:0001277,1.73e-09,4;UBERON:0001052,2.15e-09,4;UBERON:0004921,1.99e-08,118;UBERON:0005409,3.59e-08,25;UBERON:0001007,8.45e-08,145;UBERON:0001555,8.45e-08,145;UBERON:0007026,8.45e-08,145;UBERON:0004907,1.09e-07,5;UBERON:0005911,2.75e-07,82;UBERON:0003929,4.61e-07,54;UBERON:0004119,7.20e-07,160;UBERON:0000925,7.20e-07,160;UBERON:0006595,7.20e-07,160 | |||
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| ||
|short_description=p@chr13:106737646..106737650,- | |short_description=p@chr13:106737646..106737650,- | ||
}} | }} |
Latest revision as of 14:21, 24 July 2015
Short description: | p@chr13:106737646..106737650, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:106737646..106737650, - |
Coexpression cluster: | C3351_anaplastic_testicular_small_gastrointestinal_gall_optic_gastric |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 3.19e-13 | 58 |
intestinal epithelial cell | 1.73e-09 | 4 |
epithelial cell of alimentary canal | 4.59e-07 | 20 |
epithelial cell | 4.65e-07 | 253 |
endo-epithelial cell | 6.24e-07 | 42 |
hepatocyte | 7.18e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 4.06e-10 | 1 |
cranial nerve | 4.06e-10 | 1 |
nerve trunk | 4.06e-10 | 1 |
nerve connecting eye with brain | 4.06e-10 | 1 |
nerve | 4.06e-10 | 1 |
retinal neural layer | 4.06e-10 | 1 |
presumptive neural retina | 4.06e-10 | 1 |
intralobular bile duct | 1.07e-09 | 1 |
acinus | 1.07e-09 | 1 |
intrahepatic bile duct | 1.07e-09 | 1 |
portal lobule | 1.07e-09 | 1 |
hepatic acinus | 1.07e-09 | 1 |
intestinal mucosa | 1.73e-09 | 4 |
wall of intestine | 1.73e-09 | 4 |
gastrointestinal system mucosa | 1.73e-09 | 4 |
gastrointestinal system epithelium | 1.73e-09 | 4 |
intestinal epithelium | 1.73e-09 | 4 |
rectum | 2.15e-09 | 4 |
subdivision of digestive tract | 1.99e-08 | 118 |
gastrointestinal system | 3.59e-08 | 25 |
digestive system | 8.45e-08 | 145 |
digestive tract | 8.45e-08 | 145 |
primitive gut | 8.45e-08 | 145 |
lower digestive tract | 1.09e-07 | 5 |
endo-epithelium | 2.75e-07 | 82 |
gut epithelium | 4.61e-07 | 54 |
endoderm-derived structure | 7.20e-07 | 160 |
endoderm | 7.20e-07 | 160 |
presumptive endoderm | 7.20e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.95e-16 | 106 |
cell type cancer | 3.73e-11 | 143 |
gastrointestinal system cancer | 3.57e-10 | 14 |
bone marrow cancer | 4.85e-10 | 1 |
myeloma | 4.85e-10 | 1 |
pleomorphic carcinoma | 9.82e-10 | 1 |
cancer | 6.29e-09 | 235 |
disease of cellular proliferation | 1.12e-08 | 239 |