FFCP PHASE1:Hg19::chr12:6493295..6493306,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4055 | |EntrezGene=4055 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6718 | |HGNC=6718 | ||
|TSSclassifier=strong | |||
|UniProt=B3KTD9 | |UniProt=B3KTD9 | ||
|association_with_transcript=-19bp_to_ENST00000540343_5end | |association_with_transcript=-19bp_to_ENST00000540343_5end | ||
|cluster_id=chr12:6493295..6493306,+ | |||
|description=CAGE_peak_3_at_LTBR_5end | |description=CAGE_peak_3_at_LTBR_5end | ||
|id=chr12:6493295..6493306,+ | |id=chr12:6493295..6493306,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.41e-17!254;CL:0000223!2.49e-10!59;CL:0000063!7.82e-09!578;CL:0000548!5.02e-08!679;CL:0000004!5.02e-08!679;CL:0000255!5.02e-08!679;CL:0002076!5.66e-08!43;CL:0000012!1.44e-07!682 | |ontology_enrichment_celltype=CL:0000066!7.41e-17!254;CL:0000223!2.49e-10!59;CL:0000063!7.82e-09!578;CL:0000548!5.02e-08!679;CL:0000004!5.02e-08!679;CL:0000255!5.02e-08!679;CL:0002076!5.66e-08!43;CL:0000012!1.44e-07!682 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.27e-15,253;CL:0000223,6.55e-09,58;CL:0002076,2.24e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.42e-10!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.55e-11,106;DOID:0050687,4.72e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.47e-17!169;UBERON:0000925!1.47e-17!169;UBERON:0006595!1.47e-17!169;UBERON:0000077!2.56e-14!130;UBERON:0001007!9.63e-14!155;UBERON:0001555!9.63e-14!155;UBERON:0007026!9.63e-14!155;UBERON:0000926!1.57e-12!448;UBERON:0004120!1.57e-12!448;UBERON:0006603!1.57e-12!448;UBERON:0004921!2.87e-12!129;UBERON:0004185!2.87e-12!129;UBERON:0003104!1.16e-11!238;UBERON:0009142!1.16e-11!238;UBERON:0000466!2.15e-11!126;UBERON:0001041!4.27e-11!98;UBERON:0002100!6.51e-11!216;UBERON:0001004!9.70e-10!72;UBERON:0000464!1.85e-09!104;UBERON:0003102!3.14e-08!95;UBERON:0000468!7.13e-08!659;UBERON:0009569!1.13e-07!113;UBERON:0005911!3.91e-07!82;UBERON:0000915!7.10e-07!52 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.15e-14,160;UBERON:0000925,5.15e-14,160;UBERON:0006595,5.15e-14,160;UBERON:0001007,3.40e-10,145;UBERON:0001555,3.40e-10,145;UBERON:0007026,3.40e-10,145;UBERON:0001004,4.30e-10,74;UBERON:0004921,1.82e-09,118;UBERON:0002100,3.90e-09,199;UBERON:0001041,3.88e-08,87;UBERON:0005911,2.65e-07,82 | |||
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| ||
|short_description=p3@LTBR | |short_description=p3@LTBR | ||
}} | }} |
Latest revision as of 21:01, 19 September 2015
Short description: | p3@LTBR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LTBR_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000540343_5end |
EntrezGene: | LTBR |
HGNC: | 6718 |
UniProt: | B3KTD9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.27e-15 | 253 |
endodermal cell | 6.55e-09 | 58 |
endo-epithelial cell | 2.24e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.15e-14 | 160 |
endoderm | 5.15e-14 | 160 |
presumptive endoderm | 5.15e-14 | 160 |
digestive system | 3.40e-10 | 145 |
digestive tract | 3.40e-10 | 145 |
primitive gut | 3.40e-10 | 145 |
respiratory system | 4.30e-10 | 74 |
subdivision of digestive tract | 1.82e-09 | 118 |
trunk | 3.90e-09 | 199 |
foregut | 3.88e-08 | 87 |
endo-epithelium | 2.65e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.55e-11 | 106 |
cell type cancer | 4.72e-07 | 143 |