FFCP PHASE1:Hg19::chr12:58146048..58146118,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1019 | |EntrezGene=1019 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1773 | |HGNC=1773 | ||
|TSSclassifier=strong | |||
|UniProt=Q96BE9,B4DNF9,F8VZ51,F8VZZ0,F8VTV8,F8VYH9,F8VYY1 | |UniProt=Q96BE9,B4DNF9,F8VZ51,F8VZZ0,F8VTV8,F8VYH9,F8VYY1 | ||
|association_with_transcript=0bp_to_ENST00000312990,ENST00000540325,ENST00000546489,ENST00000547281,ENST00000550419,ENST00000551888,ENST00000552388,ENST00000553237_5end | |association_with_transcript=0bp_to_ENST00000312990,ENST00000540325,ENST00000546489,ENST00000547281,ENST00000550419,ENST00000551888,ENST00000552388,ENST00000553237_5end | ||
|cluster_id=chr12:58146048..58146118,- | |||
|coexpression_cluster_id=C181 | |||
|description=CAGE_peak_1_at_CDK4_5end | |description=CAGE_peak_1_at_CDK4_5end | ||
|id=chr12:58146048..58146118,- | |id=chr12:58146048..58146118,- | ||
|ontology_enrichment_celltype=CL:0000012!9.53e-26!682;CL:0000548!3.03e-25!679;CL:0000004!3.03e-25!679;CL:0000255!3.03e-25!679;CL:0000066!1.10e-21!254;CL:0002321!1.78e-20!248;CL:0000220!5.29e-20!246;CL:0000144!1.54e-15!625;CL:0000222!1.21e-11!119;CL:0000003!1.33e-11!722;CL:0000333!1.60e-11!41;CL:0000055!3.80e-11!180;CL:0000213!4.82e-11!57;CL:0000215!4.82e-11!57;CL:0000133!9.06e-11!59;CL:0002371!4.93e-09!591;CL:0000221!5.21e-08!71;CL:0000063!5.44e-08!578;CL:0000115!2.12e-07!35;CL:0002078!4.75e-07!44;CL:0000147!5.11e-07!14;CL:0000076!9.90e-07!62 | |ontology_enrichment_celltype=CL:0000012!9.53e-26!682;CL:0000548!3.03e-25!679;CL:0000004!3.03e-25!679;CL:0000255!3.03e-25!679;CL:0000066!1.10e-21!254;CL:0002321!1.78e-20!248;CL:0000220!5.29e-20!246;CL:0000144!1.54e-15!625;CL:0000222!1.21e-11!119;CL:0000003!1.33e-11!722;CL:0000333!1.60e-11!41;CL:0000055!3.80e-11!180;CL:0000213!4.82e-11!57;CL:0000215!4.82e-11!57;CL:0000133!9.06e-11!59;CL:0002371!4.93e-09!591;CL:0000221!5.21e-08!71;CL:0000063!5.44e-08!578;CL:0000115!2.12e-07!35;CL:0002078!4.75e-07!44;CL:0000147!5.11e-07!14;CL:0000076!9.90e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0000147;5.13e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.85e-21,253;CL:0002321,5.08e-21,250;CL:0000222,4.06e-12,121;CL:0000333,1.60e-11,41;CL:0000213,2.27e-11,58;CL:0000215,2.27e-11,58;CL:0000133,9.06e-11,59;CL:0000221,4.29e-08,72;CL:0000115,1.01e-07,36;CL:0002078,2.38e-07,45;CL:0000147,5.11e-07,14;CL:0000076,8.19e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!7.44e-29!239;DOID:162!8.13e-28!235;DOID:0050686!1.98e-15!137;DOID:0050687!9.44e-14!143;DOID:305!1.46e-09!106;DOID:2531!2.22e-08!51;DOID:0060083!2.22e-08!51;DOID:8692!1.81e-07!31;DOID:1240!2.45e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.91e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,7.44e-29,239;DOID:162,8.13e-28,235;DOID:0050686,1.98e-15,137;DOID:0050687,9.44e-14,143;DOID:305,1.46e-09,106;DOID:2531,2.22e-08,51;DOID:0060083,2.22e-08,51;DOID:8692,1.81e-07,31;DOID:1240,2.45e-07,39 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@CDK4 | |short_description=p1@CDK4 | ||
}} | }} |
Latest revision as of 16:32, 19 September 2015
Short description: | p1@CDK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDK4_5end |
Coexpression cluster: | C181_liposarcoma_somatostatinoma_neuroblastoma_mesothelioma_nonsmall_small_Alveolar |
Association with transcript: | 0bp_to_ENST00000312990, ENST00000540325, ENST00000546489, ENST00000547281, ENST00000550419, ENST00000551888, ENST00000552388, ENST00000553237_5end |
EntrezGene: | CDK4 |
HGNC: | 1773 |
UniProt: | Q96BE9B4DNF9F8VZ51F8VZZ0F8VTV8F8VYH9F8VYY1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.85e-21 | 253 |
embryonic cell | 5.08e-21 | 250 |
mesodermal cell | 4.06e-12 | 121 |
migratory neural crest cell | 1.60e-11 | 41 |
lining cell | 2.27e-11 | 58 |
barrier cell | 2.27e-11 | 58 |
neurectodermal cell | 9.06e-11 | 59 |
ectodermal cell | 4.29e-08 | 72 |
endothelial cell | 1.01e-07 | 36 |
meso-epithelial cell | 2.38e-07 | 45 |
pigment cell | 5.11e-07 | 14 |
squamous epithelial cell | 8.19e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 7.44e-29 | 239 |
cancer | 8.13e-28 | 235 |
organ system cancer | 1.98e-15 | 137 |
cell type cancer | 9.44e-14 | 143 |
carcinoma | 1.46e-09 | 106 |
hematologic cancer | 2.22e-08 | 51 |
immune system cancer | 2.22e-08 | 51 |
myeloid leukemia | 1.81e-07 | 31 |
leukemia | 2.45e-07 | 39 |