FFCP PHASE1:Hg19::chr12:45269952..45269963,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4753 | |EntrezGene=4753 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7751 | |HGNC=7751 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=105bp_to_ENST00000546415_5end | |association_with_transcript=105bp_to_ENST00000546415_5end | ||
|cluster_id=chr12:45269952..45269963,- | |||
|coexpression_cluster_id=C1015 | |||
|description=CAGE_peak_6_at_NELL2_5end | |description=CAGE_peak_6_at_NELL2_5end | ||
|id=chr12:45269952..45269963,- | |id=chr12:45269952..45269963,- | ||
|ontology_enrichment_celltype=CL:0000791!2.10e-11!18;CL:0000789!2.10e-11!18;CL:0002420!2.10e-11!18;CL:0002419!2.10e-11!18;CL:0000790!2.10e-11!18;CL:0000625!4.23e-10!11;CL:0000084!3.07e-07!25;CL:0000827!3.07e-07!25 | |ontology_enrichment_celltype=CL:0000791!2.10e-11!18;CL:0000789!2.10e-11!18;CL:0002420!2.10e-11!18;CL:0002419!2.10e-11!18;CL:0000790!2.10e-11!18;CL:0000625!4.23e-10!11;CL:0000084!3.07e-07!25;CL:0000827!3.07e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000625;1.09e-14;11!CL:0000791;3.18e-13;18!CL:0000789;3.18e-13;18!CL:0002419;3.18e-13;18!CL:0000084;5.75e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,7.59e-15,11;CL:0000791,2.41e-13,18;CL:0000789,2.41e-13,18;CL:0002420,2.41e-13,18;CL:0002419,2.41e-13,18;CL:0000790,2.41e-13,18;CL:0000084,4.76e-09,25;CL:0000827,4.76e-09,25 | |||
|ontology_enrichment_development_v019=CL:0000790;3.18e-13;18!UBERON:0006601;2.78e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;2.60e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.44e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.88e-48!94;UBERON:0001016!1.88e-48!94;UBERON:0005743!1.88e-47!86;UBERON:0001017!3.76e-45!82;UBERON:0001049!2.19e-43!57;UBERON:0005068!2.19e-43!57;UBERON:0006241!2.19e-43!57;UBERON:0007135!2.19e-43!57;UBERON:0002780!1.11e-37!41;UBERON:0001890!1.11e-37!41;UBERON:0006240!1.11e-37!41;UBERON:0002616!1.77e-37!59;UBERON:0003080!1.66e-36!42;UBERON:0000955!1.77e-36!69;UBERON:0006238!1.77e-36!69;UBERON:0002346!1.13e-35!90;UBERON:0001869!9.56e-35!32;UBERON:0003075!1.07e-34!86;UBERON:0007284!1.07e-34!86;UBERON:0001893!2.94e-34!34;UBERON:0002619!4.02e-34!22;UBERON:0002020!6.11e-34!34;UBERON:0003528!6.11e-34!34;UBERON:0002791!7.38e-33!33;UBERON:0007023!9.98e-32!115;UBERON:0001950!4.89e-31!20;UBERON:0003056!1.55e-30!61;UBERON:0000956!3.38e-29!25;UBERON:0000203!3.38e-29!25;UBERON:0000924!1.22e-24!173;UBERON:0006601!1.22e-24!173;UBERON:0004121!1.34e-23!169;UBERON:0000153!1.67e-23!129;UBERON:0007811!1.67e-23!129;UBERON:0000033!1.42e-22!123;UBERON:0001871!9.74e-13!7;UBERON:0000200!9.06e-10!6;UBERON:0001872!8.68e-09!5;UBERON:0000349!9.38e-09!5;UBERON:0002021!1.30e-08!5;UBERON:0003076!2.45e-08!15;UBERON:0003057!2.45e-08!15;UBERON:0004732!2.68e-08!13;UBERON:0002420!2.60e-07!9;UBERON:0007245!2.60e-07!9;UBERON:0010009!2.60e-07!9;UBERON:0010011!2.60e-07!9;UBERON:0000454!2.60e-07!9;UBERON:0004733!3.10e-07!12;UBERON:0002028!3.10e-07!12;UBERON:0007277!3.10e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.81e-62;22!UBERON:0001950;1.10e-56;20!UBERON:0000956;1.73e-54;25!UBERON:0000203;1.73e-54;25!UBERON:0001869;7.18e-49;32!UBERON:0002791;1.29e-44;32!UBERON:0001893;1.27e-43;34!UBERON:0003528;2.92e-41;34!UBERON:0002020;2.92e-41;34!UBERON:0002780;5.40e-36;41!UBERON:0001890;5.40e-36;41!UBERON:0000073;1.17e-21;53!UBERON:0002616;1.17e-21;53!UBERON:0001871;5.53e-20;6!UBERON:0000200;2.11e-16;6!UBERON:0000955;2.66e-15;68!UBERON:0000349;4.29e-15;5!UBERON:0001872;4.54e-15;5!UBERON:0002021;9.36e-15;5!UBERON:0001017;3.92e-14;75!UBERON:0001016;4.29e-14;83!UBERON:0001870;3.68e-09;3!UBERON:0001954;2.39e-07;2!UBERON:0003022;2.39e-07;2!UBERON:0002421;2.39e-07;2!UBERON:0002600;2.39e-07;2!UBERON:0001876;6.49e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.08e-62,22;UBERON:0001950,7.09e-57,20;UBERON:0000956,1.10e-54,25;UBERON:0000203,1.10e-54,25;UBERON:0001869,6.25e-54,32;UBERON:0002780,4.01e-51,41;UBERON:0001890,4.01e-51,41;UBERON:0003080,4.01e-51,41;UBERON:0006240,4.01e-51,41;UBERON:0001893,2.04e-50,34;UBERON:0002791,1.41e-49,32;UBERON:0003528,2.49e-46,34;UBERON:0002020,2.49e-46,34;UBERON:0001016,1.54e-42,89;UBERON:0001049,7.96e-41,56;UBERON:0005068,7.96e-41,56;UBERON:0006241,7.96e-41,56;UBERON:0007135,7.96e-41,56;UBERON:0001017,9.59e-41,81;UBERON:0000073,9.78e-41,53;UBERON:0002616,9.78e-41,53;UBERON:0003056,8.13e-37,61;UBERON:0000955,2.36e-34,68;UBERON:0006238,2.36e-34,68;UBERON:0002346,1.82e-29,86;UBERON:0003075,4.41e-29,82;UBERON:0007284,4.41e-29,82;UBERON:0010371,3.85e-24,104;UBERON:0004121,3.91e-22,171;UBERON:0000924,3.91e-22,171;UBERON:0006601,3.91e-22,171;UBERON:0001871,4.00e-20,6;UBERON:0011216,1.21e-17,223;UBERON:0007023,2.50e-17,114;UBERON:0000200,6.71e-17,6;UBERON:0010314,4.32e-16,132;UBERON:0001872,4.56e-15,5;UBERON:0000349,5.28e-15,5;UBERON:0002021,9.68e-15,5;UBERON:0001870,2.55e-09,3;UBERON:0000025,1.49e-08,192;UBERON:0001954,2.22e-07,2;UBERON:0003022,2.22e-07,2;UBERON:0002421,2.22e-07,2;UBERON:0002600,2.22e-07,2;UBERON:0001876,6.51e-07,2;UBERON:0002771,7.98e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,2.75393678159366,1.17903228824749,0.616804496998528,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,1.77943875794473,3.21048993707656,3.1360657141493,0,0.383220493601921,1.03088233644789,0.759059076058509,1.59282707162048,1.30216690771284,0,1.6563263098555,1.91979916731628,1.24930726552346,0.473554504088034,0,2.41928091869679,2.67440195783507,5.79297615531196,0,0,0,0,0,0,0,0,0,0,0.263504357079378,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.530119073285941,0,0.621966330092223,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811512834825538,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0.646882724578552,0.77005821767849,0,1.30139853857622,3.09315525111078,2.17771144934653,4.46557126157214,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0.411362273086194,0.648473311192717,0,0,0,2.88743956579008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97659059106519,2.39138007897872,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0.969332746095218,3.06134723934109,9.98068990005971,0,0,0,0,0,0,0.344743373241465,0.874813840149763,0.868124974666461,2.65722415744152,0.482385754501632,0,0.331737779793674,0.591095237907095,2.4132393686937,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0,0.269604531922708,0,1.40558667435203,0,0,0,0,2.41981432097328,7.03967351750127,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,1.12990370390266,0,0,3.22885059374981,0,0,0,0,0,3.89424426964113,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1332156573302,3.40508515278939,0,0.687697182986169,0.415440338029185,0,0,2.36923270966296,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0,0,0,0.387848869084652,0.52893040697076,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,2.66991963625398,2.65820453990096,3.41673541725497,1.8778639605975,0.573409195690071,0.998361463831671,1.67660287941735,0.415045904808692,0,0,0,0,1.40500471742064,1.01444720027578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93561810612423,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27894371303652,0.539124056983409,18.8719130227076,0,0.509197589862076,0,12.3935764259002,0,0,0,0.80057074828547,0,0,2.11956442818316,2.8339315265117,1.11743701340006,5.74325819874114,23.9468111410632,2.48966108871184,3.39098855826887,1.42769420259154,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,2.97165372320936,3.12431239445539,3.30698874401895,2.60004821795018,10.9394961803644,0,0,0,0,1.60710550763486,0,0,0.91064876540519,0,0,0,0.271878931907327,2.56513816895111,0,0,3.3752029925721,0.471346769748006,0,0,0,0,1.28657779517981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.84848658655264,0,2.02164154321867,11.5205003679739,2.41869136839944,0,0,0.437119121007915,0,0,0,0.392616934229891,0,1.2679671827502,0,0,0,0,0,0,0,0,0,0,0.473314686579554,3.19560003897299,11.3451179488498,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48750831837634,0.413731983447581,0,0,0.193766729508018,0.0620747142958579,0,0.190941474834495,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,1.22068853494722,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,2.75393678159366,1.17903228824749,0.616804496998528,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,1.77943875794473,3.21048993707656,3.1360657141493,0,0.383220493601921,1.03088233644789,0.759059076058509,1.59282707162048,1.30216690771284,0,1.6563263098555,1.91979916731628,1.24930726552346,0.473554504088034,0,2.41928091869679,2.67440195783507,5.79297615531196,0,0,0,0,0,0,0,0,0,0,0.263504357079378,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.530119073285941,0,0.621966330092223,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811512834825538,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0.646882724578552,0.77005821767849,0,1.30139853857622,3.09315525111078,2.17771144934653,4.46557126157214,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0.411362273086194,0.648473311192717,0,0,0,2.88743956579008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97659059106519,2.39138007897872,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0.969332746095218,3.06134723934109,9.98068990005971,0,0,0,0,0,0,0.344743373241465,0.874813840149763,0.868124974666461,2.65722415744152,0.482385754501632,0,0.331737779793674,0.591095237907095,2.4132393686937,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0,0.269604531922708,0,1.40558667435203,0,0,0,0,2.41981432097328,7.03967351750127,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,1.12990370390266,0,0,3.22885059374981,0,0,0,0,0,3.89424426964113,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1332156573302,3.40508515278939,0,0.687697182986169,0.415440338029185,0,0,2.36923270966296,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0,0,0,0.387848869084652,0.52893040697076,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,2.66991963625398,2.65820453990096,3.41673541725497,1.8778639605975,0.573409195690071,0.998361463831671,1.67660287941735,0.415045904808692,0,0,0,0,1.40500471742064,1.01444720027578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93561810612423,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27894371303652,0.539124056983409,18.8719130227076,0,0.509197589862076,0,12.3935764259002,0,0,0,0.80057074828547,0,0,2.11956442818316,2.8339315265117,1.11743701340006,5.74325819874114,23.9468111410632,2.48966108871184,3.39098855826887,1.42769420259154,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,2.97165372320936,3.12431239445539,3.30698874401895,2.60004821795018,10.9394961803644,0,0,0,0,1.60710550763486,0,0,0.91064876540519,0,0,0,0.271878931907327,2.56513816895111,0,0,3.3752029925721,0.471346769748006,0,0,0,0,1.28657779517981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.84848658655264,0,2.02164154321867,11.5205003679739,2.41869136839944,0,0,0.437119121007915,0,0,0,0.392616934229891,0,1.2679671827502,0,0,0,0,0,0,0,0,0,0,0.473314686579554,3.19560003897299,11.3451179488498,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48750831837634,0.413731983447581,0,0,0.193766729508018,0.0620747142958579,0,0.190941474834495,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,1.22068853494722,0,0,0 | ||
|short_description=p6@NELL2 | |short_description=p6@NELL2 | ||
}} | }} |
Latest revision as of 09:33, 18 September 2015
Short description: | p6@NELL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_NELL2_5end |
Coexpression cluster: | C1015_occipital_neuroectodermal_temporal_parietal_duodenum_brain_small |
Association with transcript: | 105bp_to_ENST00000546415_5end |
EntrezGene: | NELL2 |
HGNC: | 7751 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 7.59e-15 | 11 |
mature alpha-beta T cell | 2.41e-13 | 18 |
alpha-beta T cell | 2.41e-13 | 18 |
immature T cell | 2.41e-13 | 18 |
mature T cell | 2.41e-13 | 18 |
immature alpha-beta T cell | 2.41e-13 | 18 |
T cell | 4.76e-09 | 25 |
pro-T cell | 4.76e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.44e-07 | 4 |