FFCP PHASE1:Hg19::chr12:15101798..15101847,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=397 | |EntrezGene=397 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=679 | |HGNC=679 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000539131,uc001rcp.1_5end | |association_with_transcript=0bp_to_ENST00000539131,uc001rcp.1_5end | ||
|cluster_id=chr12:15101798..15101847,- | |||
|description=CAGE_peak_2_at_ARHGDIB_5end | |description=CAGE_peak_2_at_ARHGDIB_5end | ||
|id=chr12:15101798..15101847,- | |id=chr12:15101798..15101847,- | ||
|ontology_enrichment_celltype=CL:0000048!3.85e-18!430;CL:0002371!8.27e-18!591;CL:0000144!3.70e-17!625;CL:0000723!2.21e-16!436;CL:0000034!3.44e-16!444;CL:0000222!1.67e-13!119;CL:0002139!6.33e-12!24;CL:0000988!4.86e-11!182;CL:0000359!3.36e-10!32;CL:0002032!4.72e-10!165;CL:0000837!4.72e-10!165;CL:0000134!7.49e-10!358;CL:0000115!1.86e-09!35;CL:0000037!2.13e-09!172;CL:0000566!2.13e-09!172;CL:0000071!3.63e-09!18;CL:0002546!3.63e-09!18;CL:0002320!6.52e-09!365;CL:0000192!7.96e-09!42;CL:0000514!7.96e-09!42;CL:0000003!2.02e-08!722;CL:0000763!2.41e-08!112;CL:0000049!2.41e-08!112;CL:0000012!4.86e-08!682;CL:0002078!1.29e-07!44;CL:0000548!1.51e-07!679;CL:0000004!1.51e-07!679;CL:0000255!1.51e-07!679;CL:0000738!5.56e-07!140;CL:0000680!5.72e-07!57;CL:0000056!5.72e-07!57;CL:0000355!5.72e-07!57 | |ontology_enrichment_celltype=CL:0000048!3.85e-18!430;CL:0002371!8.27e-18!591;CL:0000144!3.70e-17!625;CL:0000723!2.21e-16!436;CL:0000034!3.44e-16!444;CL:0000222!1.67e-13!119;CL:0002139!6.33e-12!24;CL:0000988!4.86e-11!182;CL:0000359!3.36e-10!32;CL:0002032!4.72e-10!165;CL:0000837!4.72e-10!165;CL:0000134!7.49e-10!358;CL:0000115!1.86e-09!35;CL:0000037!2.13e-09!172;CL:0000566!2.13e-09!172;CL:0000071!3.63e-09!18;CL:0002546!3.63e-09!18;CL:0002320!6.52e-09!365;CL:0000192!7.96e-09!42;CL:0000514!7.96e-09!42;CL:0000003!2.02e-08!722;CL:0000763!2.41e-08!112;CL:0000049!2.41e-08!112;CL:0000012!4.86e-08!682;CL:0002078!1.29e-07!44;CL:0000548!1.51e-07!679;CL:0000004!1.51e-07!679;CL:0000255!1.51e-07!679;CL:0000738!5.56e-07!140;CL:0000680!5.72e-07!57;CL:0000056!5.72e-07!57;CL:0000355!5.72e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002139;2.39e-12;24!CL:0000071;1.61e-09;18!CL:0000359;1.77e-09;32!CL:0000115;8.47e-09;36!CL:0000860;5.93e-08;33!CL:0002057;5.93e-08;33!CL:0000473;3.30e-07;39!CL:0000234;3.30e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.11e-18,427;CL:0000723,1.09e-16,433;CL:0000034,1.38e-16,441;CL:0000222,1.54e-13,121;CL:0002139,2.20e-12,24;CL:0000988,2.26e-12,177;CL:0002032,1.50e-11,161;CL:0000837,1.50e-11,161;CL:0000037,8.58e-11,168;CL:0000115,2.78e-10,36;CL:0000359,2.84e-10,32;CL:0000134,4.08e-10,354;CL:0000763,5.79e-10,108;CL:0000049,5.79e-10,108;CL:0000071,1.67e-09,18;CL:0002546,1.67e-09,18;CL:0002320,3.46e-09,361;CL:0000192,1.94e-08,43;CL:0000514,1.94e-08,43;CL:0002078,2.12e-08,45;CL:0000738,6.17e-08,136;CL:0002087,2.96e-07,115;CL:0000766,4.09e-07,72;CL:0002031,4.29e-07,120;CL:0000473,4.37e-07,48;CL:0000234,4.37e-07,48;CL:0002194,7.89e-07,59;CL:0000576,7.89e-07,59;CL:0000040,7.89e-07,59;CL:0000559,7.89e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002546;1.61e-09;18 | |||
|ontology_enrichment_disease=DOID:2531!8.17e-10!51;DOID:0060083!8.17e-10!51;DOID:1240!3.66e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:2531;9.07e-07;51!DOID:0060083;9.07e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.15e-10,51;DOID:0060083,2.15e-10,51;DOID:1240,1.10e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0003081!5.44e-27!216;UBERON:0004535!2.04e-22!110;UBERON:0001009!3.65e-21!113;UBERON:0002049!4.67e-21!79;UBERON:0007798!4.67e-21!79;UBERON:0000055!1.25e-20!69;UBERON:0004872!1.95e-18!84;UBERON:0001981!3.70e-18!60;UBERON:0007500!3.70e-18!60;UBERON:0004537!3.70e-18!60;UBERON:0006965!3.70e-18!60;UBERON:0003914!3.66e-14!118;UBERON:0001637!2.35e-13!42;UBERON:0003509!2.35e-13!42;UBERON:0004572!2.35e-13!42;UBERON:0004573!7.36e-10!33;UBERON:0004571!7.36e-10!33;UBERON:0001986!3.63e-09!18;UBERON:0004638!3.63e-09!18;UBERON:0004852!3.63e-09!18;UBERON:0002193!4.48e-09!112;UBERON:0000487!1.87e-08!22;UBERON:0000490!2.96e-08!138;UBERON:0002384!3.34e-08!375;UBERON:0002390!5.19e-07!102;UBERON:0003061!5.19e-07!102;UBERON:0000947!7.95e-07!21;UBERON:0010191!7.95e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0007500;1.11e-10;56!UBERON:0001981;1.11e-10;56!UBERON:0004537;1.11e-10;56!UBERON:0000055;1.83e-10;65!UBERON:0001637;7.39e-10;42!UBERON:0003509;7.39e-10;42!UBERON:0004572;7.39e-10;42!UBERON:0003914;1.43e-09;74!UBERON:0004638;1.61e-09;18!UBERON:0001986;1.61e-09;18!UBERON:0004852;1.61e-09;18!UBERON:0002049;2.23e-09;75!UBERON:0007798;2.23e-09;75!UBERON:0000487;6.35e-09;22!UBERON:0004573;9.82e-09;33!UBERON:0004571;9.82e-09;33!UBERON:0000490;4.70e-07;33!UBERON:0001009;8.76e-07;112!UBERON:0004535;9.07e-07;109 | |||
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| ||
|short_description=p2@ARHGDIB | |short_description=p2@ARHGDIB | ||
}} | }} |
Latest revision as of 14:22, 17 September 2015
Short description: | p2@ARHGDIB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARHGDIB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000539131, uc001rcp.1_5end |
EntrezGene: | ARHGDIB |
HGNC: | 679 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.11e-18 | 427 |
somatic stem cell | 1.09e-16 | 433 |
stem cell | 1.38e-16 | 441 |
mesodermal cell | 1.54e-13 | 121 |
endothelial cell of vascular tree | 2.20e-12 | 24 |
hematopoietic cell | 2.26e-12 | 177 |
hematopoietic oligopotent progenitor cell | 1.50e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.50e-11 | 161 |
hematopoietic stem cell | 8.58e-11 | 168 |
endothelial cell | 2.78e-10 | 36 |
vascular associated smooth muscle cell | 2.84e-10 | 32 |
mesenchymal cell | 4.08e-10 | 354 |
myeloid cell | 5.79e-10 | 108 |
common myeloid progenitor | 5.79e-10 | 108 |
blood vessel endothelial cell | 1.67e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.67e-09 | 18 |
connective tissue cell | 3.46e-09 | 361 |
smooth muscle cell | 1.94e-08 | 43 |
smooth muscle myoblast | 1.94e-08 | 43 |
meso-epithelial cell | 2.12e-08 | 45 |
leukocyte | 6.17e-08 | 136 |
nongranular leukocyte | 2.96e-07 | 115 |
myeloid leukocyte | 4.09e-07 | 72 |
hematopoietic lineage restricted progenitor cell | 4.29e-07 | 120 |
defensive cell | 4.37e-07 | 48 |
phagocyte | 4.37e-07 | 48 |
monopoietic cell | 7.89e-07 | 59 |
monocyte | 7.89e-07 | 59 |
monoblast | 7.89e-07 | 59 |
promonocyte | 7.89e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 5.13e-28 | 203 |
cardiovascular system | 1.57e-22 | 109 |
vasculature | 3.34e-21 | 78 |
vascular system | 3.34e-21 | 78 |
circulatory system | 1.24e-20 | 112 |
vessel | 1.50e-20 | 68 |
mesoderm | 1.58e-18 | 315 |
mesoderm-derived structure | 1.58e-18 | 315 |
presumptive mesoderm | 1.58e-18 | 315 |
splanchnic layer of lateral plate mesoderm | 4.05e-18 | 83 |
epithelial tube open at both ends | 5.61e-18 | 59 |
blood vessel | 5.61e-18 | 59 |
blood vasculature | 5.61e-18 | 59 |
vascular cord | 5.61e-18 | 59 |
epithelial tube | 2.60e-15 | 117 |
artery | 2.87e-13 | 42 |
arterial blood vessel | 2.87e-13 | 42 |
arterial system | 2.87e-13 | 42 |
hemolymphoid system | 1.45e-10 | 108 |
systemic artery | 1.18e-09 | 33 |
systemic arterial system | 1.18e-09 | 33 |
blood vessel endothelium | 1.67e-09 | 18 |
endothelium | 1.67e-09 | 18 |
cardiovascular system endothelium | 1.67e-09 | 18 |
immune system | 2.24e-09 | 93 |
simple squamous epithelium | 5.83e-09 | 22 |
connective tissue | 2.70e-08 | 371 |
hematopoietic system | 2.83e-08 | 98 |
blood island | 2.83e-08 | 98 |
unilaminar epithelium | 3.16e-08 | 148 |
aorta | 8.75e-07 | 21 |
aortic system | 8.75e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.15e-10 | 51 |
immune system cancer | 2.15e-10 | 51 |
leukemia | 1.10e-07 | 39 |