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FFCP PHASE1:Mm9::chr15:89330500..89330539,+: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=58234
|EntrezGene=58234
|HGNC=
|HGNC=
|MCL_coexpression_id=189
|TSSclassifier=NA
|UniProt=
|UniProt=
|association_with_transcript=-14bp_to_ENSMUST00000135214_5end
|association_with_transcript=-14bp_to_ENSMUST00000135214_5end
|cluster_id=chr15:89330500..89330539,+
|description=CAGE_peak_3_at_Shank3_5end
|description=CAGE_peak_3_at_Shank3_5end
|id=chr15:89330500..89330539,+
|id=chr15:89330500..89330539,+
|ontology_enrichment_celltype=CL:0000117!8.37e-13!23;CL:0000337!8.37e-13!23;CL:0002319!2.08e-08!43;CL:0000221!4.05e-08!44;CL:0000133!4.05e-08!44;CL:0000540!2.58e-07!33;CL:0000047!2.58e-07!33;CL:0000031!2.58e-07!33;CL:0000404!2.58e-07!33
|ontology_enrichment_celltype=CL:0000117!8.37e-13!23;CL:0000337!8.37e-13!23;CL:0002319!2.08e-08!43;CL:0000221!4.05e-08!44;CL:0000133!4.05e-08!44;CL:0000540!2.58e-07!33;CL:0000047!2.58e-07!33;CL:0000031!2.58e-07!33;CL:0000404!2.58e-07!33
|ontology_enrichment_celltype_v019_2=CL:0000117,2.23e-17,23;CL:0000337,2.23e-17,23;CL:0002319,2.42e-12,43;CL:0000221,7.09e-12,44;CL:0000133,7.09e-12,44;CL:0000540,3.98e-10,33;CL:0000047,3.98e-10,33;CL:0000031,3.98e-10,33;CL:0000404,3.98e-10,33;CL:0000393,1.21e-07,39;CL:0000211,1.21e-07,39
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001017!6.90e-22!73;UBERON:0005743!6.90e-22!73;UBERON:0000073!1.18e-20!75;UBERON:0001016!1.18e-20!75;UBERON:0001049!1.52e-20!52;UBERON:0005068!1.52e-20!52;UBERON:0006241!1.52e-20!52;UBERON:0007135!1.52e-20!52;UBERON:0000955!8.24e-20!50;UBERON:0006238!8.24e-20!50;UBERON:0002616!3.11e-19!49;UBERON:0002020!8.96e-19!34;UBERON:0002346!3.59e-18!71;UBERON:0003075!3.59e-18!71;UBERON:0007284!3.59e-18!71;UBERON:0000033!1.64e-17!63;UBERON:0004121!2.97e-16!102;UBERON:0000924!2.97e-16!102;UBERON:0006601!2.97e-16!102;UBERON:0003080!4.72e-16!40;UBERON:0003056!8.23e-16!49;UBERON:0002780!1.58e-15!39;UBERON:0001890!1.58e-15!39;UBERON:0006240!1.58e-15!39;UBERON:0002791!1.84e-15!29;UBERON:0003528!1.84e-15!29;UBERON:0001893!1.84e-15!29;UBERON:0000956!1.95e-11!21;UBERON:0001869!1.95e-11!21;UBERON:0000203!1.95e-11!21;UBERON:0002619!5.33e-10!17;UBERON:0000153!7.86e-08!94;UBERON:0002021!1.56e-07!10;UBERON:0000411!1.56e-07!10;UBERON:0001950!1.56e-07!10;UBERON:0007811!6.67e-07!86
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.21e-28,73;UBERON:0000073,6.60e-28,54;UBERON:0001016,9.22e-27,75;UBERON:0002020,2.03e-26,34;UBERON:0001049,1.52e-23,52;UBERON:0005068,1.52e-23,52;UBERON:0006241,1.52e-23,52;UBERON:0007135,1.52e-23,52;UBERON:0004121,2.27e-21,95;UBERON:0000924,2.27e-21,95;UBERON:0006601,2.27e-21,95;UBERON:0002346,8.16e-21,64;UBERON:0003075,8.16e-21,64;UBERON:0007284,8.16e-21,64;UBERON:0003528,8.57e-21,29;UBERON:0002791,8.57e-21,29;UBERON:0001893,8.57e-21,29;UBERON:0000955,5.69e-20,47;UBERON:0006238,5.69e-20,47;UBERON:0002616,4.32e-19,46;UBERON:0003080,1.21e-18,40;UBERON:0002780,8.47e-18,39;UBERON:0001890,8.47e-18,39;UBERON:0006240,8.47e-18,39;UBERON:0003056,1.76e-17,49;UBERON:0010371,1.24e-16,73;UBERON:0000956,4.51e-15,21;UBERON:0001869,4.51e-15,21;UBERON:0000203,4.51e-15,21;UBERON:0002619,1.11e-13,17;UBERON:0002021,4.25e-12,10;UBERON:0000411,4.25e-12,10;UBERON:0001950,4.25e-12,10;UBERON:0010314,1.24e-10,92;UBERON:0001948,5.72e-07,5;UBERON:0002315,5.72e-07,5;UBERON:0002420,6.96e-07,8;UBERON:0007245,6.96e-07,8;UBERON:0010009,6.96e-07,8;UBERON:0010011,6.96e-07,8;UBERON:0000454,6.96e-07,8
|phase1_expression=0.480446541314382,0,0.909998478779072,0,0,0,0,0,0,0,0,0,0,0,5.3297561890506,1.01237633694913,0,0,0,0,0.935476191661768,0,0,0,0.22940928106717,0,0.430761996159075,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.608261587317087,0.183546752161682,0.782391344348039,0,1.75748946187577,1.74986909166855,1.25987779462826,2.87505128729943,0,0,0,0,0.573066879877513,0,2.22548106945558,2.64495489636016,5.07065122804943,0.677689064138264,1.77858959222228,0,0,0,2.39680088414724,3.45796474789399,1.65903379693564,0.810035629990144,1.26194976810829,5.71301968807607,4.63823935998388,1.34739879136449,0.862609239164127,0.919218786610021,9.91042928994498,15.7055425844781,12.7493422602682,3.16527090552465,2.56165402086747,3.12548022334056,3.07101298901519,1.68828783009504,3.97275444219706,4.12480019663135,4.9830088279686,3.72798891650601,0,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,0,0,0.520455980298408,0.304465478312141,0.691846491768175,0.301445281105245,0.352766121407114,0.753999547978053,0,0.144599356919912,0.884610551949874,0.647067399789637,0.662524555381181,1.45462575940567,0,2.92780797011547,8.16842156572475,0,0,0,0,2.39665023047716,5.03250663100489,0.879580464790051,5.04090528557602,4.34716277461562,8.3115217823824,6.48965052271031,0.712875546952214,0.746441823660558,0,0,0.650602214813519,0,1.0803727788321,0.90422890701429,0.884474488967262,1.0249097622788,1.12442069471675,1.03481348295606,0.646703978798527,1.13463648100692,1.75951124163949,0.43839146485515,1.66828349535359,0.348252166522167,1.4404749548556,0.796137067273973,0,0,0,0,0.234526059981096,0.36012412292203,0,0.196764231747404,0.308534225774757,0,0.268273401399619,0,0.16455984991348,0.164167464079095,0.162137619091711,0.146199987425332,0,0,3.99550902271842,2.98423375899925,0,0.264450566663544,1.2797295032114,0.696710015581316,0.902072229254653,0.403367049246685,0.22237804384487,0.380451252225118,0,0.164698954724011,0.502670417600539,0.198956472041151,0,0,0,0,0.379335801906163,0.685491075658373,0,0.610953983535943,0.193952487167626,0.210407459670956,0.379419222745544,0.147610147979602,0,0.123397163921801,0,0.500535317148282,1.57247196090562,0.899448449539415,0.405720242777006,0.72353147925725,0.50925170356284,1.43848068725405,0.972811360650212,0,0,0,0.312037673114561,0,0,0.482443521363367,0,1.32643988239339,1.14075483509418,0.678980343100753,0.234690248288502,0,0,0.390267295715598,0,0.221464689648775,0,0.163863314715738,0,0.144649058581512,0,0,0,0.275936746304732,0.963303539926752,1.05490517932983,0,0,0.315508219416257,0.390438744296638,0,0,0.222798674082394,0.283076530788832,0,0,0,2.89189184779626,0,1.06839362200353,0.651547837414304,0.989820737835213,0,0.242780636154981,1.51161778482376,0.377210159511796,0.885905678642318,0.307435147943927,0.258428293168221,0.727067458955011,0,0,0,0,0.340439605753788,0.900305470156551,0.129358683782755,0.643011105094777,0.177340233642274,1.24858172321449,0.493647061806363,0.608929898229199,0.938686832254841,0.21183207086382,0,0,0.968786560175433,0.241251699712623,0.238744688006273,0,0.291480836629851,0.927126510052548,0.512612642393558,1.65109494370578,0.740778109478847,1.50694765603753,2.1871076435364,0.228778173206523,0.339956859987711,0,0,0,2.05618395827738,0.406638934253697,1.18805874903981,0,0.218362563746178,0.269728692769641,0,0,0,0,0,0.598066184175915,0.330916980914195,1.55560950675238,0.774958940866387,1.18269287843545,0.469428954583016,0.5208175393758,0.419437377702843,0,0,0,0.608175645870493,0.205421914329655,0,0.179026695667481,0,0,0,0,0,0,0,0.0962118416403295,0,0,0.887943813496259,1.25599399253266,0.671538465456314,0,0,0.183151624267265,0,0,3.3885110557024,8.74617949363636,3.43737308063638,8.42080593484069,3.42541259885321,6.7985450765073,4.05013500139084,4.5032120322422,5.89085131679466,1.55328093525546,0.93408612825759,0.798049746802062,0.682934423016537,0.486213434136588,0.419226325255965,0.735374033800057,0.44449345560323,0.412070114477788,1.28367683836726,0.505394423527595,1.77435509923168,0.377252682772152,0.749132059759059,0.832326981263301,0.976402972245426,0.952587382566147,1.0429589335037,1.35036454324594,1.23625770240992,1.17759136107518,0.685738504770831,0.70990322463735,0.238436189947321,1.45346416632329,0.658765662907314,0.676916863133412,0,0.263069711437843,1.35804113845862,1.12228454331548,1.30498519936592,0.886540341380071,0.818462086339379,0.929621047115796,0.578719832943424,1.49886346762768,0.701794825336225,0.859484216193193,0.191288332068843,0.220591419119515,0.463735671240843
|phase1_expression=0.480446541314382,0,0.909998478779072,0,0,0,0,0,0,0,0,0,0,0,5.3297561890506,1.01237633694913,0,0,0,0,0.935476191661768,0,0,0,0.22940928106717,0,0.430761996159075,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.608261587317087,0.183546752161682,0.782391344348039,0,1.75748946187577,1.74986909166855,1.25987779462826,2.87505128729943,0,0,0,0,0.573066879877513,0,2.22548106945558,2.64495489636016,5.07065122804943,0.677689064138264,1.77858959222228,0,0,0,2.39680088414724,3.45796474789399,1.65903379693564,0.810035629990144,1.26194976810829,5.71301968807607,4.63823935998388,1.34739879136449,0.862609239164127,0.919218786610021,9.91042928994498,15.7055425844781,12.7493422602682,3.16527090552465,2.56165402086747,3.12548022334056,3.07101298901519,1.68828783009504,3.97275444219706,4.12480019663135,4.9830088279686,3.72798891650601,0,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,0,0,0.520455980298408,0.304465478312141,0.691846491768175,0.301445281105245,0.352766121407114,0.753999547978053,0,0.144599356919912,0.884610551949874,0.647067399789637,0.662524555381181,1.45462575940567,0,2.92780797011547,8.16842156572475,0,0,0,0,2.39665023047716,5.03250663100489,0.879580464790051,5.04090528557602,4.34716277461562,8.3115217823824,6.48965052271031,0.712875546952214,0.746441823660558,0,0,0.650602214813519,0,1.0803727788321,0.90422890701429,0.884474488967262,1.0249097622788,1.12442069471675,1.03481348295606,0.646703978798527,1.13463648100692,1.75951124163949,0.43839146485515,1.66828349535359,0.348252166522167,1.4404749548556,0.796137067273973,0,0,0,0,0.234526059981096,0.36012412292203,0,0.196764231747404,0.308534225774757,0,0.268273401399619,0,0.16455984991348,0.164167464079095,0.162137619091711,0.146199987425332,0,0,3.99550902271842,2.98423375899925,0,0.264450566663544,1.2797295032114,0.696710015581316,0.902072229254653,0.403367049246685,0.22237804384487,0.380451252225118,0,0.164698954724011,0.502670417600539,0.198956472041151,0,0,0,0,0.379335801906163,0.685491075658373,0,0.610953983535943,0.193952487167626,0.210407459670956,0.379419222745544,0.147610147979602,0,0.123397163921801,0,0.500535317148282,1.57247196090562,0.899448449539415,0.405720242777006,0.72353147925725,0.50925170356284,1.43848068725405,0.972811360650212,0,0,0,0.312037673114561,0,0,0.482443521363367,0,1.32643988239339,1.14075483509418,0.678980343100753,0.234690248288502,0,0,0.390267295715598,0,0.221464689648775,0,0.163863314715738,0,0.144649058581512,0,0,0,0.275936746304732,0.963303539926752,1.05490517932983,0,0,0.315508219416257,0.390438744296638,0,0,0.222798674082394,0.283076530788832,0,0,0,2.89189184779626,0,1.06839362200353,0.651547837414304,0.989820737835213,0,0.242780636154981,1.51161778482376,0.377210159511796,0.885905678642318,0.307435147943927,0.258428293168221,0.727067458955011,0,0,0,0,0.340439605753788,0.900305470156551,0.129358683782755,0.643011105094777,0.177340233642274,1.24858172321449,0.493647061806363,0.608929898229199,0.938686832254841,0.21183207086382,0,0,0.968786560175433,0.241251699712623,0.238744688006273,0,0.291480836629851,0.927126510052548,0.512612642393558,1.65109494370578,0.740778109478847,1.50694765603753,2.1871076435364,0.228778173206523,0.339956859987711,0,0,0,2.05618395827738,0.406638934253697,1.18805874903981,0,0.218362563746178,0.269728692769641,0,0,0,0,0,0.598066184175915,0.330916980914195,1.55560950675238,0.774958940866387,1.18269287843545,0.469428954583016,0.5208175393758,0.419437377702843,0,0,0,0.608175645870493,0.205421914329655,0,0.179026695667481,0,0,0,0,0,0,0,0.0962118416403295,0,0,0.887943813496259,1.25599399253266,0.671538465456314,0,0,0.183151624267265,0,0,3.3885110557024,8.74617949363636,3.43737308063638,8.42080593484069,3.42541259885321,6.7985450765073,4.05013500139084,4.5032120322422,5.89085131679466,1.55328093525546,0.93408612825759,0.798049746802062,0.682934423016537,0.486213434136588,0.419226325255965,0.735374033800057,0.44449345560323,0.412070114477788,1.28367683836726,0.505394423527595,1.77435509923168,0.377252682772152,0.749132059759059,0.832326981263301,0.976402972245426,0.952587382566147,1.0429589335037,1.35036454324594,1.23625770240992,1.17759136107518,0.685738504770831,0.70990322463735,0.238436189947321,1.45346416632329,0.658765662907314,0.676916863133412,0,0.263069711437843,1.35804113845862,1.12228454331548,1.30498519936592,0.886540341380071,0.818462086339379,0.929621047115796,0.578719832943424,1.49886346762768,0.701794825336225,0.859484216193193,0.191288332068843,0.220591419119515,0.463735671240843
|short_description=p3@Shank3
|short_description=p3@Shank3
}}
}}

Latest revision as of 07:44, 27 September 2015

Short description:p3@Shank3
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_3_at_Shank3_5end
Coexpression cluster:MCL_coexpression_mm9:189
Association with transcript: -14bp_to_ENSMUST00000135214_5end
EntrezGene:Shank3
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p3@Shank3

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.48
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.91
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A15.33
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A31.01
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.94
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.23
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.43
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.22
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.13
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.61
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.18
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.78
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B81.76
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C31.75
Mouse Astrocytes, donor2.CNhs12078.11552-120C41.26
Mouse Astrocytes, donor3.CNhs12107.11633-122C42.88
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.57
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C32.23
Mouse Granule cells, donor2.CNhs12357.11731-123E32.64
Mouse Granule cells, donor3.CNhs12108.11636-122C75.07
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.68
Mouse Meningeal cells, donor3.CNhs12109.11639-122D11.78
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C82.40
Mouse Microglia, donor2.CNhs12634.11736-123E83.46
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D51.66
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.81
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D91.26
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F15.71
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D54.64
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D21.35
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.86
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.92
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D39.91
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F315.71
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D712.75
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D43.17
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F42.56
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D83.13
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E43.07
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E51.69
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I63.97
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D64.12
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F64.98
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E13.73
Mouse Schwann, donor1.CNhs12507.11728-123D90.00
Mouse Schwann, donor2.CNhs12573.11746-123F90.08
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.29
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.42
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.14
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.34
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.00
adrenal gland, embryo E14.CNhs11038.406-44C50.52
adrenal gland, embryo E16.CNhs11004.1254-43D60.30
adrenal gland, embryo E17.CNhs11043.1263-45I10.69
adrenal gland, embryo E18.CNhs11026.1262-18F50.30
adrenal gland, neonate N00.CNhs11191.1311-23C10.35
adrenal gland, neonate N25.CNhs11223.1377-27I30.75
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.14
bone (os femoris), adult.CNhs10483.56-12G20.88
bone (os femoris), neonate N02.CNhs11227.1985-43F50.65
bone (os femoris), neonate N16.CNhs11225.1525-43A60.66
bone (os femoris), neonate N20.CNhs11195.1350-25C31.45
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B22.93
cerebellum, neonate N30.CNhs11135.1395-42I28.17
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A42.40
corpus striatum, adult.CNhs10487.19-21D85.03
corpus striatum, neonate N00.CNhs11226.630-43F10.88
cortex, adult.CNhs10473.12-14D55.04
cortex, neonate N30.CNhs11107.1392-42F24.35
diencephalon, adult.CNhs10482.20-12F28.31
diencephalon, neonate N30.CNhs11201.1388-42B26.49
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.71
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.75
epididymis, adult.CNhs10490.58-23B20.00
eyeball, adult.CNhs10484.31-12G40.00
eyeball, embryo E12.CNhs11016.345-16C60.65
eyeball, embryo E14.CNhs10521.399-16E20.00
eyeball, embryo E15.CNhs10593.426-16C91.08
eyeball, embryo E17.CNhs11023.1261-18D40.90
eyeball, neonate N00.CNhs11207.633-15C60.88
eyeball, neonate N01.CNhs11140.1532-43E71.02
eyeball, neonate N02.CNhs11205.1551-44G81.12
eyeball, neonate N16.CNhs11188.777-19A21.03
forelimb, embryo E11.CNhs10596.335-25E20.65
forelimb, embryo E12.CNhs10600.359-14H21.13
forelimb, embryo E13.CNhs10589.384-1E21.76
forelimb, embryo E14.CNhs10577.413-26A80.44
forelimb, embryo E15.CNhs11007.437-20E71.67
forelimb, embryo E17.CNhs10598.1517-43C40.35
forelimb, embryo E18.CNhs11008.1520-43B51.44
gonad, embryo E13.CNhs11044.1564-45I60.80
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.00
heart, embryo E12.CNhs11015.353-12F50.23
heart, embryo E13.CNhs11013.376-3I90.36
heart, embryo E14.CNhs10597.403-26D40.00
heart, embryo E15.CNhs11017.431-16C80.20
heart, embryo E16.CNhs11021.457-17C60.31
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.27
heart, neonate N00.CNhs11213.639-21E30.00
heart, neonate N03.CNhs11221.1349-25I20.16
heart, neonate N10.CNhs11118.749-24G10.16
heart, neonate N16.CNhs11209.782-15G10.16
heart, neonate N20.CNhs11127.821-26I60.15
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.00
hippocampus, adult.CNhs10478.13-16E84.00
hippocampus, neonate N00.CNhs11228.627-43G12.98
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.26
intestine, embryo E12.CNhs11019.1251-16I51.28
intestine, embryo E13.CNhs11010.381-16D50.70
intestine, embryo E15.CNhs10602.976-16D80.90
intestine, embryo E16.CNhs10585.463-22H40.40
intestine, embryo E17.CNhs10582.482-18D30.22
intestine, embryo E18.CNhs10526.1289-20F70.38
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.16
intestine, neonate N06.CNhs11102.688-20B80.50
intestine, neonate N07.CNhs11095.720-20F20.20
intestine, neonate N10.CNhs11098.755-23A50.00
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.38
kidney, embryo E15.CNhs10997.434-16F80.69
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.61
kidney, embryo E18.CNhs11001.1288-20C70.19
kidney, neonate N00.CNhs11214.646-21G70.21
kidney, neonate N10.CNhs11206.758-6D50.38
kidney, neonate N20.CNhs11113.832-19I10.15
kidney, neonate N25.CNhs11122.1353-25F30.00
kidney, neonate N30.CNhs11203.1385-42H10.12
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.50
liver, embryo E13.CNhs10524.378-3H61.57
liver, embryo E14.CNhs10594.409-16E10.90
liver, embryo E15.CNhs10520.433-16D70.41
liver, embryo E16.CNhs10523.462-17F50.72
liver, embryo E17.CNhs10510.481-18A30.51
liver, embryo E18.CNhs10579.499-43G41.44
liver, neonate N00.CNhs11117.641-24F40.97
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.31
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.48
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G21.33
lung, embryo E14.CNhs10604.404-26F81.14
lung, embryo E15.CNhs11020.432-17C50.68
lung, embryo E16.CNhs10998.458-17B60.23
lung, embryo E17.CNhs10605.480-44A60.00
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.39
lung, neonate N06.CNhs11212.683-20E50.00
lung, neonate N07.CNhs11111.715-19A30.22
lung, neonate N10.CNhs11219.750-23E60.00
lung, neonate N20.CNhs11109.822-18A40.16
lung, neonate N25.CNhs11119.1359-25C70.00
lung, neonate N30.CNhs11133.1394-42H20.14
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.28
medulla oblongata, adult.CNhs10477.17-12C20.96
medulla oblongata, neonate N30.CNhs11200.1396-42A31.05
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.32
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.39
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.22
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.28
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.00
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.00
olfactory brain, adult.CNhs10489.18-22I92.89
ovary, adult.CNhs10507.91-2I70.00
ovary, embryo E18.CNhs11040.505-44H71.07
ovary, neonate N00.CNhs11217.1299-22I40.65
oviduct, adult pregnant day01.CNhs10500.988-6G60.99
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.24
pancreas, embryo E15.CNhs11042.1556-45F21.51
pancreas, embryo E16.CNhs11003.460-26E50.38
pancreas, embryo E17.CNhs10599.1558-45G30.89
pancreas, embryo E18.CNhs10580.1535-43I70.31
pancreas, neonate N00.CNhs11105.645-26G90.26
pancreas, neonate N01.CNhs11138.1531-43D70.73
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.34
pituitary gland, embryo E12.CNhs11018.346-16E60.90
pituitary gland, embryo E13.CNhs11009.370-44C70.13
pituitary gland, embryo E14.CNhs11037.398-44A50.64
pituitary gland, embryo E15.CNhs10592.427-16B90.18
pituitary gland, embryo E16.CNhs11036.449-43F61.25
pituitary gland, embryo E17.CNhs11039.1265-44F50.49
pituitary gland, neonate N00.CNhs11190.1308-22E90.61
placenta, adult pregnant day10.CNhs10472.539-13I70.94
placenta, adult pregnant day17.CNhs10464.577-18G30.21
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.00
skin, neonate N00.CNhs11124.650-25G40.97
skin, neonate N03.CNhs11215.662-22H30.24
skin, neonate N06.CNhs11097.693-20I50.24
skin, neonate N10.CNhs11108.762-6C40.00
small intestine, neonate N16.CNhs11114.790-21I10.29
spinal cord, adult.CNhs10505.24-13C90.93
spleen, adult.CNhs10465.25-2G20.51
spleen, embryo E16.CNhs11035.461-43C11.65
spleen, embryo E18.CNhs11011.1271-21F20.74
spleen, neonate N10.CNhs11116.752-24D11.51
spleen, neonate N20.CNhs11112.824-19H12.19
spleen, neonate N25.CNhs11099.1354-25G30.23
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.34
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E32.06
stomach, embryo E15.CNhs10603.1252-16G80.41
stomach, embryo E16.CNhs11022.459-17D41.19
stomach, embryo E17.CNhs11006.1035-18D50.00
stomach, embryo E18.CNhs10999.1286-20C60.22
stomach, neonate N03.CNhs11193.1340-24B80.27
stomach, neonate N07.CNhs11210.718-18A90.00
stomach, neonate N25.CNhs11104.1355-25E40.00
stomach, neonate N30.CNhs11134.1386-42I10.00
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.60
testis, embryo E15.CNhs11034.443-27C50.33
testis, embryo E16.CNhs11033.470-26G51.56
testis, embryo E17.CNhs11029.486-18I50.77
testis, embryo E18.CNhs11027.503-18G51.18
testis, neonate N00.CNhs11189.1300-22B70.47
testis, neonate N07.CNhs11222.726-26I40.52
testis, neonate N10.CNhs11204.763-44D90.42
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.61
thymus, embryo E15.CNhs11005.430-45I20.21
thymus, embryo E16.CNhs11002.456-26C50.00
thymus, embryo E17.CNhs10581.478-18C10.18
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.00
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.10
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.89
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F71.26
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.67
urinary bladder, adult.CNhs10481.879-12E40.00
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.18
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A13.39
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A28.75
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A33.44
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D78.42
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A43.43
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A56.80
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A64.05
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A74.50
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A85.89
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A91.55
whole body, embryo E11.CNhs11014.324-5I80.93
whole body, embryo E12.CNhs10587.857-27C90.80
whole body, embryo E13.CNhs10512.372-23H20.68
whole body, embryo E14.5.CNhs10578.420-27D20.49
whole body, embryo E14.CNhs10519.395-14B10.42
whole body, embryo E16.CNhs10514.453-14F20.74
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.44
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G51.28
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.51
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G51.77
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.75
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.83
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.98
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.95
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G51.04
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G51.35
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G51.24
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G51.18
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.69
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.71
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.24
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G51.45
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.66
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.68
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.26
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G51.36
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G51.12
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G51.30
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.89
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.82
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.93
whole body, embryo E17.5.CNhs10513.490-9F90.58
whole body, embryo E17.CNhs10517.475-3I51.50
whole body, embryo E18.CNhs10516.493-3B30.70
whole body, neonate N00.CNhs10525.657-19C20.86
whole body, neonate N01.CNhs10576.659-23C60.19
whole body, neonate N06.CNhs10515.692-21D10.22
whole body, neonate N10.CNhs10518.761-6B40.46





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)2.23e-1723
neuroblast (sensu Vertebrata)2.23e-1723
neural cell2.42e-1243
ectodermal cell7.09e-1244
neurectodermal cell7.09e-1244
neuron3.98e-1033
neuronal stem cell3.98e-1033
neuroblast3.98e-1033
electrically signaling cell3.98e-1033
electrically responsive cell1.21e-0739
electrically active cell1.21e-0739

Uber anatomy
Ontology termp-valuen
central nervous system6.21e-2873
regional part of nervous system6.60e-2854
nervous system9.22e-2775
gray matter2.03e-2634
neural tube1.52e-2352
neural rod1.52e-2352
future spinal cord1.52e-2352
neural keel1.52e-2352
ectoderm-derived structure2.27e-2195
ectoderm2.27e-2195
presumptive ectoderm2.27e-2195
neurectoderm8.16e-2164
neural plate8.16e-2164
presumptive neural plate8.16e-2164
brain grey matter8.57e-2129
regional part of telencephalon8.57e-2129
telencephalon8.57e-2129
brain5.69e-2047
future brain5.69e-2047
regional part of brain4.32e-1946
anterior neural tube1.21e-1840
regional part of forebrain8.47e-1839
forebrain8.47e-1839
future forebrain8.47e-1839
pre-chordal neural plate1.76e-1749
ecto-epithelium1.24e-1673
cerebral cortex4.51e-1521
cerebral hemisphere4.51e-1521
pallium4.51e-1521
regional part of cerebral cortex1.11e-1317
occipital lobe4.25e-1210
visual cortex4.25e-1210
neocortex4.25e-1210
structure with developmental contribution from neural crest1.24e-1092
regional part of spinal cord5.72e-075
gray matter of spinal cord5.72e-075
basal ganglion6.96e-078
nuclear complex of neuraxis6.96e-078
aggregate regional part of brain6.96e-078
collection of basal ganglia6.96e-078
cerebral subcortex6.96e-078
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