FFCP PHASE1:Mm9::chr19:55985074..55985085,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=141 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:55985074..55985085,+ | |||
|description=CAGE_peak_at_chr19:55985074..55985085,+ | |description=CAGE_peak_at_chr19:55985074..55985085,+ | ||
|id=chr19:55985074..55985085,+ | |id=chr19:55985074..55985085,+ | ||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,1.11e-27,3;CL:0000117,8.67e-14,23;CL:0000337,8.67e-14,23;CL:0002610,2.12e-12,3;CL:0000540,1.41e-09,33;CL:0000047,1.41e-09,33;CL:0000031,1.41e-09,33;CL:0000404,1.41e-09,33;CL:0000393,4.45e-08,39;CL:0000211,4.45e-08,39;CL:0002319,2.62e-07,43;CL:0000221,3.88e-07,44;CL:0000133,3.88e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,6.57e-17,5;UBERON:0002435,6.57e-17,5;UBERON:0000204,6.57e-17,5;UBERON:0010082,6.57e-17,5;UBERON:0004684,2.12e-12,3;UBERON:0002275,2.12e-12,3;UBERON:0002420,8.20e-11,8;UBERON:0007245,8.20e-11,8;UBERON:0010009,8.20e-11,8;UBERON:0010011,8.20e-11,8;UBERON:0000454,8.20e-11,8;UBERON:0002259,1.03e-09,1;UBERON:0002314,1.03e-09,1;UBERON:0004061,1.03e-09,1;UBERON:0006777,1.03e-09,1;UBERON:0005882,1.03e-09,1 | |||
|phase1_expression=0,0,0,0.30246421130683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0.782391344348039,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0.286533439938757,0,0.809265843438391,0.528990979272033,1.90149421051854,0,0.889294796111139,0,0,0,0.299600110518405,0.384218305321555,0.207379224616955,0,0,0,0,0,0.0958454710182364,0,0,1.14918604276669,1.0752457327937,1.71452174049252,3.56801810049398,3.12548022334056,0,0,0.15279824777681,0,0.142371680799103,0,0,0,0,0,0,0,0,0.448026887097336,0,0.170430322578058,0.259786004602869,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0.23517741427141,0.125666591329675,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,1.04853447583376,0,0,0,0,0.20778804455956,0.162241263067758,0.101839363850316,0.124406970610093,0,0,0.130120442962704,0,0,0.30140963567143,0.272145996605311,0,0.0937017245597288,0,0,0.189106080167819,0.351902248327898,0.876782929710299,0.278047249225598,0,0,0,0,0,0,0,0.234526059981096,0,0.23674473558521,0.196764231747404,0,0,0,0.233530684734339,0.16455984991348,0,0,0,0,0.134206418760372,0,0,0,0,0.426576501070468,0,0,0.201683524623343,0,0,0.949058123089023,0.164698954724011,0,0,0,0,0,0.199141273254367,0,0.114248512609729,0,0,0.193952487167626,0.210407459670956,0,0.147610147979602,0.31399745568275,0,0,0,0.196558995113203,0,0,0,0,0,0.162135226775035,0,2.87536413054709,0.372140947668503,0,0.252578877947112,0.179397413521912,0,0,0,0,0,0,0,0,0.585400943573396,0,0.221464689648775,0.318909537314974,0,0,0,0,0,0,0.551873492609465,0,0,0,0,0,0,0.215423397732799,0,0.222798674082394,0,0.404810701674894,0,0,0,0,0.35613120733451,0,0.164970122972535,0,0.242780636154981,0.302323556964751,0.377210159511796,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0.304464949114599,0.23467170806371,0,0,0,1.13025098687134,0,0.119372344003136,0,0.582961673259701,0.18542530201051,0,0,0,0,0,0,0,0.139951452323658,0.138199973804424,0,0.158167996790568,0.203319467126849,0.108005340821801,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,0,0,0,0,0.337912250981556,0.352071715937262,0.13020438484395,0,0,0,0,0,0,0,0,0,0.240390899039938,0.147689527174577,0,0.0762068066549998,0.100826185136841,0,0,0,0.226730383615211,0,0,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0.170733605754134,0,0,0.367687016900028,0,0,0.320919209591815,0,0,0.188626341386076,0,0.0640251524048693,0.0574354689556133,0,0,0.192909220463705,0,0,0,0.177475806159338,0,0,0.188218760830661,0.0846146078916765,0.182927972872773,0.263069711437843,0,0,0,0,0,0,0.192906610981141,1.24905288968973,0.701794825336225,0.429742108096597,0.191288332068843,0,0 | |phase1_expression=0,0,0,0.30246421130683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0.782391344348039,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0.286533439938757,0,0.809265843438391,0.528990979272033,1.90149421051854,0,0.889294796111139,0,0,0,0.299600110518405,0.384218305321555,0.207379224616955,0,0,0,0,0,0.0958454710182364,0,0,1.14918604276669,1.0752457327937,1.71452174049252,3.56801810049398,3.12548022334056,0,0,0.15279824777681,0,0.142371680799103,0,0,0,0,0,0,0,0,0.448026887097336,0,0.170430322578058,0.259786004602869,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0.23517741427141,0.125666591329675,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,1.04853447583376,0,0,0,0,0.20778804455956,0.162241263067758,0.101839363850316,0.124406970610093,0,0,0.130120442962704,0,0,0.30140963567143,0.272145996605311,0,0.0937017245597288,0,0,0.189106080167819,0.351902248327898,0.876782929710299,0.278047249225598,0,0,0,0,0,0,0,0.234526059981096,0,0.23674473558521,0.196764231747404,0,0,0,0.233530684734339,0.16455984991348,0,0,0,0,0.134206418760372,0,0,0,0,0.426576501070468,0,0,0.201683524623343,0,0,0.949058123089023,0.164698954724011,0,0,0,0,0,0.199141273254367,0,0.114248512609729,0,0,0.193952487167626,0.210407459670956,0,0.147610147979602,0.31399745568275,0,0,0,0.196558995113203,0,0,0,0,0,0.162135226775035,0,2.87536413054709,0.372140947668503,0,0.252578877947112,0.179397413521912,0,0,0,0,0,0,0,0,0.585400943573396,0,0.221464689648775,0.318909537314974,0,0,0,0,0,0,0.551873492609465,0,0,0,0,0,0,0.215423397732799,0,0.222798674082394,0,0.404810701674894,0,0,0,0,0.35613120733451,0,0.164970122972535,0,0.242780636154981,0.302323556964751,0.377210159511796,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0.304464949114599,0.23467170806371,0,0,0,1.13025098687134,0,0.119372344003136,0,0.582961673259701,0.18542530201051,0,0,0,0,0,0,0,0.139951452323658,0.138199973804424,0,0.158167996790568,0.203319467126849,0.108005340821801,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,0,0,0,0,0.337912250981556,0.352071715937262,0.13020438484395,0,0,0,0,0,0,0,0,0,0.240390899039938,0.147689527174577,0,0.0762068066549998,0.100826185136841,0,0,0,0.226730383615211,0,0,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0.170733605754134,0,0,0.367687016900028,0,0,0.320919209591815,0,0,0.188626341386076,0,0.0640251524048693,0.0574354689556133,0,0,0.192909220463705,0,0,0,0.177475806159338,0,0,0.188218760830661,0.0846146078916765,0.182927972872773,0.263069711437843,0,0,0,0,0,0,0.192906610981141,1.24905288968973,0.701794825336225,0.429742108096597,0.191288332068843,0,0 | ||
|short_description=p@chr19:55985074..55985085,+ | |short_description=p@chr19:55985074..55985085,+ | ||
}} | }} |
Latest revision as of 09:02, 4 August 2015
Short description: | p@chr19:55985074..55985085, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:55985074..55985085, + |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 1.11e-27 | 3 |
CNS neuron (sensu Vertebrata) | 8.67e-14 | 23 |
neuroblast (sensu Vertebrata) | 8.67e-14 | 23 |
raphe nuclei neuron | 2.12e-12 | 3 |
neuron | 1.41e-09 | 33 |
neuronal stem cell | 1.41e-09 | 33 |
neuroblast | 1.41e-09 | 33 |
electrically signaling cell | 1.41e-09 | 33 |
electrically responsive cell | 4.45e-08 | 39 |
electrically active cell | 4.45e-08 | 39 |
neural cell | 2.62e-07 | 43 |
ectodermal cell | 3.88e-07 | 44 |
neurectodermal cell | 3.88e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 6.57e-17 | 5 |
striatum | 6.57e-17 | 5 |
ventral part of telencephalon | 6.57e-17 | 5 |
future corpus striatum | 6.57e-17 | 5 |
raphe nuclei | 2.12e-12 | 3 |
reticular formation | 2.12e-12 | 3 |
basal ganglion | 8.20e-11 | 8 |
nuclear complex of neuraxis | 8.20e-11 | 8 |
aggregate regional part of brain | 8.20e-11 | 8 |
collection of basal ganglia | 8.20e-11 | 8 |
cerebral subcortex | 8.20e-11 | 8 |
corpora quadrigemina | 1.03e-09 | 1 |
midbrain tectum | 1.03e-09 | 1 |
neural tube mantle layer | 1.03e-09 | 1 |
tectal plate | 1.03e-09 | 1 |
neural tube alar plate | 1.03e-09 | 1 |