FFCP PHASE1:Mm9::chr19:17030554..17030565,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=353211 | |EntrezGene=353211 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=148 | |||
|TSSclassifier=NA | |||
|UniProt=Q52KR3,Q8CA96,Q3TMI5 | |UniProt=Q52KR3,Q8CA96,Q3TMI5 | ||
|association_with_transcript=-42bp_to_ENSMUST00000087689,ENSMUST00000112869,NM_181348,uc008gxd.1,uc008gxf.2,uc008gxg.2_5end | |association_with_transcript=-42bp_to_ENSMUST00000087689,ENSMUST00000112869,NM_181348,uc008gxd.1,uc008gxf.2,uc008gxg.2_5end | ||
|cluster_id=chr19:17030554..17030565,+ | |||
|description=CAGE_peak_5_at_Prune2_5end | |description=CAGE_peak_5_at_Prune2_5end | ||
|id=chr19:17030554..17030565,+ | |id=chr19:17030554..17030565,+ | ||
|ontology_enrichment_celltype=CL:0000333!2.64e-11!10;CL:0000095!2.64e-11!10;CL:0000243!2.64e-11!10;CL:0000123!2.64e-11!10;CL:0000125!2.64e-11!10;CL:0000030!2.64e-11!10;CL:0000339!2.64e-11!10;CL:0002319!7.10e-09!43;CL:0000221!1.45e-08!44;CL:0000133!1.45e-08!44;CL:0002453!1.84e-08!8;CL:0000128!2.56e-08!6;CL:0000126!2.56e-08!6;CL:0000127!2.56e-08!6;CL:0000055!5.66e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,2.53e-52,6;CL:0000126,2.53e-52,6;CL:0000127,2.53e-52,6;CL:0002453,2.11e-39,8;CL:0000333,1.23e-31,10;CL:0000095,1.23e-31,10;CL:0000243,1.23e-31,10;CL:0000123,1.23e-31,10;CL:0000125,1.23e-31,10;CL:0000030,1.23e-31,10;CL:0000339,1.23e-31,10;CL:0002605,1.78e-26,2;CL:0002604,1.78e-26,2;CL:0002319,1.26e-07,43;CL:0002603,1.32e-07,2;CL:0000221,1.86e-07,44;CL:0000133,1.86e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!7.39e-12!102;UBERON:0000924!7.39e-12!102;UBERON:0006601!7.39e-12!102;UBERON:0002342!9.78e-10!10;UBERON:0005062!9.78e-10!10;UBERON:0002346!1.78e-09!71;UBERON:0003075!1.78e-09!71;UBERON:0007284!1.78e-09!71;UBERON:0000073!4.25e-09!75;UBERON:0001016!4.25e-09!75;UBERON:0001017!1.24e-07!73;UBERON:0005743!1.24e-07!73;UBERON:0004733!2.44e-07!6;UBERON:0004732!2.44e-07!6;UBERON:0002028!2.44e-07!6;UBERON:0007277!2.44e-07!6;UBERON:0002298!7.86e-07!6;UBERON:0000010!9.18e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,5.53e-10,12;UBERON:0003057,5.53e-10,12;UBERON:0004733,3.15e-09,6;UBERON:0004732,3.15e-09,6;UBERON:0002028,3.15e-09,6;UBERON:0007277,3.15e-09,6;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0001954,2.72e-08,7;UBERON:0003022,2.72e-08,7;UBERON:0002421,2.72e-08,7;UBERON:0000349,2.72e-08,7;UBERON:0002600,2.72e-08,7;UBERON:0001896,2.35e-07,2;UBERON:0002298,2.35e-07,2;UBERON:0005290,2.35e-07,2;UBERON:0010096,2.35e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79655344036982,13.6205433295373,21.1928589990969,1.53985063787899,2.87505128729943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599200221036809,0,0,0,0,0,0.220868540951614,0,0,0,0,0.383062014255563,0.307213066512487,0,0,0,0.837548997004143,0,0.15279824777681,0,0,0,0.302904773332736,0.755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593768556259299,0.173485326766136,0,0.230615497256059,0.452167921657868,0.470354828542819,0,0,0.144599356919912,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0,0,0,0,0,0,0,0,0,0.229902104433473,0.180062129805349,0,0.136072998302656,0,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0.116765342367169,0,0,0.162137619091711,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0.172684981865896,0,0,0,0,0,1.12385412991454,0.586058432961016,0,0,0.631016438832513,0.390438744296638,0.215423397732799,0,0,0.283076530788832,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0,0,0,0,0,0.329098041204242,0,0.938686832254841,0,0,0,0,0,0,0,0,2.03967832211561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0.134864346384821,0.247960367176008,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0,0.206035057238894,0.320919209591815,0,0,0.188626341386076,0,0.128050304809739,0,0,0,0,0,0,0,0.177475806159338,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0.214871054048298,0,0.220591419119515,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79655344036982,13.6205433295373,21.1928589990969,1.53985063787899,2.87505128729943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599200221036809,0,0,0,0,0,0.220868540951614,0,0,0,0,0.383062014255563,0.307213066512487,0,0,0,0.837548997004143,0,0.15279824777681,0,0,0,0.302904773332736,0.755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593768556259299,0.173485326766136,0,0.230615497256059,0.452167921657868,0.470354828542819,0,0,0.144599356919912,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0,0,0,0,0,0,0,0,0,0.229902104433473,0.180062129805349,0,0.136072998302656,0,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0.116765342367169,0,0,0.162137619091711,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0.172684981865896,0,0,0,0,0,1.12385412991454,0.586058432961016,0,0,0.631016438832513,0.390438744296638,0.215423397732799,0,0,0.283076530788832,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0,0,0,0,0,0.329098041204242,0,0.938686832254841,0,0,0,0,0,0,0,0,2.03967832211561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0.134864346384821,0.247960367176008,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0,0.206035057238894,0.320919209591815,0,0,0.188626341386076,0,0.128050304809739,0,0,0,0,0,0,0,0.177475806159338,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0.214871054048298,0,0.220591419119515,0 | ||
|short_description=p5@Prune2 | |short_description=p5@Prune2 | ||
}} | }} |
Latest revision as of 22:56, 1 October 2015
Short description: | p5@Prune2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Prune2_5end |
Coexpression cluster: | MCL_coexpression_mm9:148 |
Association with transcript: | -42bp_to_ENSMUST00000087689, ENSMUST00000112869, NM_181348, uc008gxd.1, uc008gxf.2, uc008gxg.2_5end |
EntrezGene: | Prune2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 2.53e-52 | 6 |
macroglial cell | 2.53e-52 | 6 |
astrocyte | 2.53e-52 | 6 |
oligodendrocyte precursor cell | 2.11e-39 | 8 |
migratory neural crest cell | 1.23e-31 | 10 |
neuron associated cell | 1.23e-31 | 10 |
glial cell (sensu Vertebrata) | 1.23e-31 | 10 |
neuron associated cell (sensu Vertebrata) | 1.23e-31 | 10 |
glial cell | 1.23e-31 | 10 |
glioblast | 1.23e-31 | 10 |
glioblast (sensu Vertebrata) | 1.23e-31 | 10 |
astrocyte of the cerebral cortex | 1.78e-26 | 2 |
astrocyte of the hippocampus | 1.78e-26 | 2 |
neural cell | 1.26e-07 | 43 |
astrocyte of the cerebellum | 1.32e-07 | 2 |
ectodermal cell | 1.86e-07 | 44 |
neurectodermal cell | 1.86e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 5.53e-10 | 12 |
chordal neural plate | 5.53e-10 | 12 |
segmental subdivision of hindbrain | 3.15e-09 | 6 |
segmental subdivision of nervous system | 3.15e-09 | 6 |
hindbrain | 3.15e-09 | 6 |
presumptive hindbrain | 3.15e-09 | 6 |
central nervous system | 1.47e-08 | 73 |
nervous system | 2.47e-08 | 75 |
Ammon's horn | 2.72e-08 | 7 |
lobe parts of cerebral cortex | 2.72e-08 | 7 |
hippocampal formation | 2.72e-08 | 7 |
limbic system | 2.72e-08 | 7 |
limbic lobe | 2.72e-08 | 7 |
medulla oblongata | 2.35e-07 | 2 |
brainstem | 2.35e-07 | 2 |
myelencephalon | 2.35e-07 | 2 |
future myelencephalon | 2.35e-07 | 2 |