FFCP PHASE1:Hg19::chr11:14993888..14993903,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=796 | |EntrezGene=796 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1437 | |HGNC=1437 | ||
|TSSclassifier=strong | |||
|UniProt=P01258 | |UniProt=P01258 | ||
|association_with_transcript=0bp_to_ENST00000331587_5end | |association_with_transcript=0bp_to_ENST00000331587_5end | ||
|cluster_id=chr11:14993888..14993903,- | |||
|coexpression_cluster_id=C184 | |||
|description=CAGE_peak_1_at_CALCA_5end | |description=CAGE_peak_1_at_CALCA_5end | ||
|id=chr11:14993888..14993903,- | |id=chr11:14993888..14993903,- | ||
|ontology_enrichment_celltype=CL:0000453!7.89e-08!5;CL:0002322!1.11e-07!5 | |ontology_enrichment_celltype=CL:0000453!7.89e-08!5;CL:0002322!1.11e-07!5 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.06e-21!115;UBERON:0003076!4.54e-13!15;UBERON:0003057!4.54e-13!15;UBERON:0004732!9.35e-13!13;UBERON:0004733!2.01e-11!12;UBERON:0002028!2.01e-11!12;UBERON:0007277!2.01e-11!12;UBERON:0002346!2.48e-10!90;UBERON:0002298!1.06e-09!8;UBERON:0003075!1.39e-09!86;UBERON:0007284!1.39e-09!86;UBERON:0001017!1.25e-08!82;UBERON:0005743!1.36e-08!86;UBERON:0000073!1.62e-08!94;UBERON:0001016!1.62e-08!94;UBERON:0001049!1.63e-08!57;UBERON:0005068!1.63e-08!57;UBERON:0006241!1.63e-08!57;UBERON:0007135!1.63e-08!57;UBERON:0002680!2.16e-07!9;UBERON:0001895!2.16e-07!9;UBERON:0010092!2.16e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;1.16e-17;6!UBERON:0004732;5.46e-15;13!UBERON:0001896;2.44e-13;3!UBERON:0005290;2.44e-13;3!UBERON:0004733;3.56e-12;12!UBERON:0002028;3.56e-12;12!UBERON:0001905;2.21e-10;2!UBERON:0002757;2.21e-10;2!UBERON:0010134;2.21e-10;2!UBERON:0005408;2.21e-10;2!UBERON:0001899;2.21e-10;2!UBERON:0002133;5.30e-10;2!UBERON:0003127;8.62e-10;2!UBERON:0002148;1.22e-09;2!UBERON:0006331;1.22e-09;2!UBERON:0009662;1.22e-09;2!UBERON:0002368;2.90e-08;33!UBERON:0003978;6.27e-07;3!UBERON:0000946;6.27e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,7.43e-18,6;UBERON:0003076,4.15e-17,15;UBERON:0003057,4.15e-17,15;UBERON:0004732,3.63e-15,13;UBERON:0001896,1.97e-13,3;UBERON:0005290,1.97e-13,3;UBERON:0010096,1.97e-13,3;UBERON:0004733,2.57e-12,12;UBERON:0002028,2.57e-12,12;UBERON:0007277,2.57e-12,12;UBERON:0007023,1.61e-10,114;UBERON:0001905,2.21e-10,2;UBERON:0002757,2.21e-10,2;UBERON:0010134,2.21e-10,2;UBERON:0005408,2.21e-10,2;UBERON:0001899,2.21e-10,2;UBERON:0002133,4.96e-10,2;UBERON:0003127,8.82e-10,2;UBERON:0002148,8.82e-10,2;UBERON:0006331,8.82e-10,2;UBERON:0009662,8.82e-10,2;UBERON:0002368,7.99e-09,35;UBERON:0011216,1.67e-07,223;UBERON:0003978,6.00e-07,3;UBERON:0009751,6.00e-07,3;UBERON:0000946,6.00e-07,3;UBERON:0002523,6.00e-07,3;UBERON:0005983,6.00e-07,3;UBERON:0002165,6.00e-07,3;UBERON:0002062,6.00e-07,3;UBERON:0007280,6.00e-07,3;UBERON:0000988,8.76e-07,3;UBERON:0002240,9.83e-07,3;UBERON:0005174,9.83e-07,3;UBERON:0001137,9.83e-07,3 | |||
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| ||
|short_description=p1@CALCA | |short_description=p1@CALCA | ||
}} | }} |
Latest revision as of 22:20, 16 September 2015
Short description: | p1@CALCA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CALCA_5end |
Coexpression cluster: | C184_somatostatinoma_smallcell_nonsmall_small_gastrointestinal_pineal_thyroid |
Association with transcript: | 0bp_to_ENST00000331587_5end |
EntrezGene: | CALCA |
HGNC: | 1437 |
UniProt: | P01258 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brainstem | 7.43e-18 | 6 |
posterior neural tube | 4.15e-17 | 15 |
chordal neural plate | 4.15e-17 | 15 |
segmental subdivision of nervous system | 3.63e-15 | 13 |
medulla oblongata | 1.97e-13 | 3 |
myelencephalon | 1.97e-13 | 3 |
future myelencephalon | 1.97e-13 | 3 |
segmental subdivision of hindbrain | 2.57e-12 | 12 |
hindbrain | 2.57e-12 | 12 |
presumptive hindbrain | 2.57e-12 | 12 |
adult organism | 1.61e-10 | 114 |
pineal body | 2.21e-10 | 2 |
regional part of epithalamus | 2.21e-10 | 2 |
secretory circumventricular organ | 2.21e-10 | 2 |
circumventricular organ | 2.21e-10 | 2 |
epithalamus | 2.21e-10 | 2 |
atrioventricular valve | 4.96e-10 | 2 |
open tracheal system trachea | 8.82e-10 | 2 |
locus ceruleus | 8.82e-10 | 2 |
brainstem nucleus | 8.82e-10 | 2 |
hindbrain nucleus | 8.82e-10 | 2 |
endocrine gland | 7.99e-09 | 35 |
organ system subdivision | 1.67e-07 | 223 |
valve | 6.00e-07 | 3 |
cardiac mesenchyme | 6.00e-07 | 3 |
cardial valve | 6.00e-07 | 3 |
tunica intima | 6.00e-07 | 3 |
heart layer | 6.00e-07 | 3 |
endocardium | 6.00e-07 | 3 |
endocardial cushion | 6.00e-07 | 3 |
presumptive endocardium | 6.00e-07 | 3 |
pons | 8.76e-07 | 3 |
spinal cord | 9.83e-07 | 3 |
dorsal region element | 9.83e-07 | 3 |
dorsum | 9.83e-07 | 3 |