FFCP PHASE1:Hg19::chr10:105505692..105505705,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:105505692..105505705,+ | |||
|description=CAGE_peak_at_chr10:105505692..105505705,+ | |description=CAGE_peak_at_chr10:105505692..105505705,+ | ||
|id=chr10:105505692..105505705,+ | |id=chr10:105505692..105505705,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.61e-07!254 | |ontology_enrichment_celltype=CL:0000066!3.61e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0002541;4.58e-25;3!CL:0002178;6.21e-25;3!CL:0000349;1.29e-15;19!CL:0002537;1.68e-15;5!CL:0000082;3.78e-09;19!CL:0002328;2.88e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.82e-25,3;CL:0002178,7.93e-25,3;CL:0000349,1.11e-15,19;CL:0002537,1.40e-15,5;CL:0000082,3.73e-09,19;CL:0002328,2.79e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.27e-15!14;DOID:305!9.72e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:4074;1.72e-10;2!DOID:4905;1.72e-10;2!DOID:3498;1.72e-10;2!DOID:3493;1.97e-10;2!DOID:299;4.01e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:4074,1.72e-10,2;DOID:4905,1.72e-10,2;DOID:3498,1.72e-10,2;DOID:3493,2.07e-10,2;DOID:299,4.14e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0005631!6.37e-11!14;UBERON:0000158!6.37e-11!14;UBERON:0000305!3.12e-09!7;UBERON:0000974!2.71e-08!10;UBERON:0004871!5.13e-08!8;UBERON:0003729!6.11e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.94e-29;10!UBERON:0000158;2.94e-29;10!UBERON:0003124;4.58e-25;3!UBERON:0000920;4.58e-25;3!UBERON:0000945;2.17e-15;5!UBERON:0010039;2.17e-15;5!UBERON:0000478;1.92e-12;24!UBERON:0000305;2.36e-11;7!UBERON:0004802;3.78e-09;19!UBERON:0000115;3.78e-09;19!UBERON:0002048;5.59e-08;22!UBERON:0004807;5.59e-08;22!UBERON:0000117;5.59e-08;22!UBERON:0000171;5.59e-08;22!UBERON:0000170;5.59e-08;22!UBERON:0004815;2.88e-07;3!UBERON:0002031;2.88e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,3.82e-25,3;UBERON:0005631,3.94e-21,14;UBERON:0000158,3.94e-21,14;UBERON:0000478,1.71e-12,24;UBERON:0000305,2.07e-11,7;UBERON:0003124,2.30e-11,7;UBERON:0004871,4.22e-10,8;UBERON:0000945,6.06e-10,8;UBERON:0010039,6.06e-10,8;UBERON:0004802,3.73e-09,19;UBERON:0000115,3.73e-09,19;UBERON:0002048,5.52e-08,22;UBERON:0000117,5.52e-08,22;UBERON:0000171,5.52e-08,22;UBERON:0000170,5.52e-08,22;UBERON:0005597,5.52e-08,22;UBERON:0000118,5.52e-08,22;UBERON:0004815,2.79e-07,3;UBERON:0002031,2.79e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50602959389125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.668462741311041,0.294605907474837,0.886135578334485,0.812411591295047,0,0.390178042679635,0,0,0,0,0,0,0.113309342697566,0.383220493601921,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.818238361772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,1.1240175325762,0.301586917234893,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0.283550194484773,0,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0.43050537267123,0,0.443430153536676,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0.780103689942349,0,1.90995587790152,0.593929361665277,5.22173193568695,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,1.5950057986596,0,4.26427820814908,0,0.470940769185074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.7176277597097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.195984794828755,0.34823682632161,0,0,0,0,0,0.193978032976839,0,0.451961481561065,0,0.19871461170299,0,0,0.320635281006135,0,0,1.15272333723285,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81926008926669,0,0,0,0,0,0,0.638341257770182,0,0,0,0.327872630709804,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0.235939446695481,0,0.577628330751691,0,0,0,0,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0.115233987555779,0,0,0,0,0.889851215136553,0,0,0.280272163313789,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25745537315059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,1.28386186702669,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407955318967927,0.26721740526556,0.36757959813938,0,0,0,0,0,0.639701945702943,0,0,0.0620747142958579,0,0,0,0,0,0.26940821205835,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50602959389125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.668462741311041,0.294605907474837,0.886135578334485,0.812411591295047,0,0.390178042679635,0,0,0,0,0,0,0.113309342697566,0.383220493601921,0.34362744548263,0,0,0,0,0,0.127986611154418,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.818238361772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,1.1240175325762,0.301586917234893,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0.283550194484773,0,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0.43050537267123,0,0.443430153536676,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0.780103689942349,0,1.90995587790152,0.593929361665277,5.22173193568695,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,1.5950057986596,0,4.26427820814908,0,0.470940769185074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.7176277597097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.195984794828755,0.34823682632161,0,0,0,0,0,0.193978032976839,0,0.451961481561065,0,0.19871461170299,0,0,0.320635281006135,0,0,1.15272333723285,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81926008926669,0,0,0,0,0,0,0.638341257770182,0,0,0,0.327872630709804,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0.235939446695481,0,0.577628330751691,0,0,0,0,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0.115233987555779,0,0,0,0,0.889851215136553,0,0,0.280272163313789,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25745537315059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,1.28386186702669,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407955318967927,0.26721740526556,0.36757959813938,0,0,0,0,0,0.639701945702943,0,0,0.0620747142958579,0,0,0,0,0,0.26940821205835,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr10:105505692..105505705,+ | |short_description=p@chr10:105505692..105505705,+ | ||
}} | }} |
Latest revision as of 10:02, 23 July 2015
Short description: | p@chr10:105505692..105505705, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:105505692..105505705, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.82e-25 | 3 |
epithelial cell of stomach | 7.93e-25 | 3 |
extraembryonic cell | 1.11e-15 | 19 |
amnion mesenchymal stem cell | 1.40e-15 | 5 |
epithelial cell of lung | 3.73e-09 | 19 |
bronchial epithelial cell | 2.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 3.82e-25 | 3 |
extraembryonic membrane | 3.94e-21 | 14 |
membranous layer | 3.94e-21 | 14 |
extraembryonic structure | 1.71e-12 | 24 |
amnion | 2.07e-11 | 7 |
chorion | 2.30e-11 | 7 |
somatic layer of lateral plate mesoderm | 4.22e-10 | 8 |
stomach | 6.06e-10 | 8 |
food storage organ | 6.06e-10 | 8 |
respiratory tract epithelium | 3.73e-09 | 19 |
lung epithelium | 3.73e-09 | 19 |
lung | 5.52e-08 | 22 |
respiratory tube | 5.52e-08 | 22 |
respiration organ | 5.52e-08 | 22 |
pair of lungs | 5.52e-08 | 22 |
lung primordium | 5.52e-08 | 22 |
lung bud | 5.52e-08 | 22 |
lower respiratory tract epithelium | 2.79e-07 | 3 |
epithelium of bronchus | 2.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
pancreas adenocarcinoma | 1.72e-10 | 2 |
pancreatic carcinoma | 1.72e-10 | 2 |
pancreatic ductal adenocarcinoma | 1.72e-10 | 2 |
signet ring cell adenocarcinoma | 2.07e-10 | 2 |
adenocarcinoma | 4.14e-07 | 25 |